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The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

 Thomas Derrien , Rory Johnson , Giovanni Bussotti , Andrea Tanzer , Sarah Djebali , et al.
Genome Research, 2012, 22, pp.1775-1789. ⟨10.1101/gr.132159.111⟩
Article dans une revue hal-01205054v1
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Colonization and genetic diversification processes of Leishmania infantum in the Americas

 Philipp Schwabl , Mariana C Boité , Giovanni Bussotti , Arne Jacobs , Bjorn Andersson , et al.
Communications Biology, 2021, 4 (1), pp.139. ⟨10.1038/s42003-021-01658-5⟩
Article dans une revue pasteur-03210732v1
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Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression

 Franck Dumetz , H. Imamura , M. Sanders , V. Seblova , J. Myskova , et al.
mBio, 2017, pp.e00599-17. ⟨10.1128/mBio.00599-17⟩
Article dans une revue pasteur-01974269v1
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Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage

 Giovanni Bussotti , Blaise Li , Pascale Pescher , Barbora Vojtkova , Isabelle Louradour , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (10), pp.e2220828120. ⟨10.1073/pnas.2220828120⟩
Article dans une revue pasteur-04492314v1
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The oxidative stress response and virulence of pathogenic Leptospira are controlled by the interplay of two peroxide stress regulators

 Crispin Zavala-Alvarado , Antony T. Vincent , Odile Sismeiro , Rachel Legendre , Hugo Varet , et al.
2021
Pré-publication, Document de travail pasteur-03250968v1
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Genome instability drives epistatic adaptation in the human pathogen Leishmania

 Giovanni Bussotti , Laura Piel , Pascale Pescher , Malgorzata A. Domagalska , K. Shanmugha Rajan , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (51), pp.e2113744118. ⟨10.1073/pnas.2113744118⟩
Article dans une revue pasteur-03512631v1
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Three-dimensional interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis

 Ian J Groves , Emma La Drane , Marco Michalski , Jack M Monahan , Cinzia G Scarpini , et al.
2021
Pré-publication, Document de travail pasteur-03210819v1
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Nuclear and mitochondrial genome sequencing of North-African Leishmania infantum isolates from cured and relapsed visceral leishmaniasis patients reveals variations correlating with geography and phenotype

 Giovanni Bussotti , Alia Benkahla , Fakhri Jeddi , Oussama Souiaï , Karim Aoun , et al.
Microbial Genomics, 2020, 6 (10), ⟨10.1099/mgen.0.000444⟩
Article dans une revue pasteur-03109058v1
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GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells

 Gerald F Späth , Giovanni Bussotti
Nucleic Acids Research, 2021, ⟨10.1093/nar/gkab1237⟩
Article dans une revue pasteur-03512652v1
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Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification

 Giovanni Bussotti , Evi Gouzelou , Mariana Côrtes Boité , Ihcen Kherachi , Zoubir Harrat , et al.
mBio, 2018, 9 (6), pp.e01399-18. ⟨10.1128/mBio.01399-18⟩
Article dans une revue pasteur-01974308v1
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Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response

 Hervé Lecoeur , Eric Prina , Thibault Rosazza , Kossiwa Kokou , Paya N'Diaye , et al.
Cell Reports, 2020, 30 (6), pp.1870-1882.e4. ⟨10.1016/j.celrep.2020.01.030⟩
Article dans une revue pasteur-02562442v1
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Trans-Atlantic Spillover: Deconstructing the Ecological Adaptation of Leishmania infantum in the Americas

 Mariana Boité , Gerald Späth , Giovanni Bussotti , Renato Porrozzi , Fernanda Morgado , et al.
Genes, 2020, 11 (1), pp.4. ⟨10.3390/genes11010004⟩
Article dans une revue pasteur-02770535v1
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Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani

 Pablo Prieto Barja , Pascale Pescher , Giovanni Bussotti , Franck Dumetz , Hideo Imamura , et al.
Nature Ecology & Evolution, 2017, 1 (12), pp.1961-1969. ⟨10.1038/s41559-017-0361-x⟩
Article dans une revue pasteur-02107201v1
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Intron retention-dependent gene regulation in Cryptococcus neoformans

 Sara Gonzalez-Hilarion , Damien Paulet , Kyung-Tae Lee , Chung-Chau Hon , Pierre Lechat , et al.
Scientific Reports, 2016, 6 (1), pp.32252. ⟨10.1038/srep32252⟩
Article dans une revue pasteur-02861773v1
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Post-transcriptional regulation of Leishmania fitness gain

 Laura Piel , K. Shanmugha Rajan , Giovanni Bussotti , Hugo Varet , Rachel Legendre , et al.
2021
Pré-publication, Document de travail pasteur-03210825v1
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The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress

 Crispin Zavala-Alvarado , Odile Sismeiro , Rachel Legendre , Hugo Varet , Giovanni Bussotti , et al.
PLoS Pathogens, 2020, 16 (10), pp.e1008904. ⟨10.1371/journal.ppat.1008904⟩
Article dans une revue pasteur-02970798v1
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BlastR-fast and accurate database searches for non-coding RNAs

 Giovanni Bussotti , Emanuele Raineri , Ionas Erb , Matthias Zytnicki , Andreas Wilm , et al.
Nucleic Acids Research, 2011, 39 (16), pp.6886-6895. ⟨10.1093/nar/gkr335⟩
Article dans une revue hal-02644812v1
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The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence

 Crispin Zavala-Alvarado , Samuel G. Huete , Antony T. Vincent , Odile Sismeiro , Rachel Legendre , et al.
PLoS Pathogens, 2021, 17 (12), pp.e1009087. ⟨10.1371/journal.ppat.1009087⟩
Article dans une revue pasteur-03464148v1
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Long noncoding RNAs with enhancer-like function in human cells

 Thomas Derrien , Malte Beringer , Kiranmai Gumireddy , Alessandro Gardini , Giovanni Bussotti , et al.
Cell, 2010, 143 (1), pp.46-58. ⟨10.1016/j.cell.2010.09.001⟩
Article dans une revue hal-02668720v1
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