Gilles Pilate
101
Documents
Présentation
### **Équipe Physiologie Moléculaire de la Formation du Bois (BOIS) - "Décryptage des mécanismes moléculaires impliqués dans la formation du bois"**
[https://www6.val-de-loire.inrae.fr/biofora/Recherche/Equipe-BOIS ](https://www6.val-de-loire.inrae.fr/biofora/Recherche/Equipe-BOIS)
<gilles.pilate@inrae.fr>
### Fonctions
Directeur de Recherches à l’UMR BioForA (Biologie intégrée pour la valorisation de la diversité des arbres et de la forêt, rattachée au département ECOFA)
Responsable scientifique du LICA (<https://www6.inrae.fr/lica>)
Chargé de mission auprès de la Présidence du Centre INRAE Val de Loire
### Diplômes
- 2019. **DU BioInformatique Intégrée**, Université Paris Diderot
- 2002. **HDR Sciences de la Vie**, CNU section 66, UFR Sciences, Université d’Orléans
- 1985-1987. **Thèse de l’Université Paris VI**, Sciences de la Vie, Biologie et Physiologie végétales, Laboratoire d’Ontogenèse expérimentale, Université Paris VI, bourse MRT. Etude du role des phytohormones dans le développement végétatif et floral chez Pseudotsuga menziesii (Mirb.) Franco, par des méthodes immunoenzymatiques.
- 1984. **DEA de Biologie et Physiologie Végétales**, Université Paris VI. Contribution à l’étude de la micropropagation de la jojoba, Simmondsia chinensis (Link) Schneid.
### Expériences professionnelles
- Novembre 1991-présent. Chercheur INRA puis INRAE, UMR BioForA, Centre Val de Loire
- 1989-1991. Research Associate, Conifer Biotechnology Lab, Plant Biotechnology Institute, NRCC, Saskatoon, Saskatchewan, Canada
- 1988. Stage post-doctoral, Molecular Genetic Lab, Biological Science Division, NRCC, Ottawa, Ontario, Canada, Summit Canadian fellowship.
### Sociétés savantes
- 2009. Elu à l’ “International Academy of Wood Science”
### Thèmes de Recherche / techniques utilisées
- Etude des déterminants moléculaires responsable des contraintes mises en place dans le bois de tension (collaboration avec LMGC (CNRS Montpellier) et ECOFOG UMR INRAE CNRS Guyane, projet ANR Blanc ‘Stress in Trees’, thèses de Fernanda Guedes et de Amra Secerovic
- Aptitude à la saccharification de bois de peupliers GM à lignines modifiées. Collaboration avec le VIB Ghent, BIA INRAE Nantes, IJPB INRAE Versailles, FARE INRAE Reims
- Bois de tension : peluchage et aptitude à la saccharification (projet FP7 EnergyPoplar, projet ANR Blanc Stress in Trees, projet régional OPeNSPeNU)
- Vers l’élaboration d’un modèle de construction des parois secondaires des fibres de bois chez le peuplier (thèse de Clément Cuello)
- Mise en oeuvre des nouvelles techniques d’édition du génome sur le peuplier (projet PIA Genius
### **Molecular Physiology of Wood Formation Team (BOIS) - "Deciphering molecular mechanisms responsible for wood formation"**
<https://www6.val-de-loire.inrae.fr/biofora/Recherche/Equipe-BOIS>
<gilles.pilate@inrae.fr>
### Position
Research Officer at BioForA UMR (Integrated Biology for Forest and Tree Diversity Valuation, part of the ECOFA Department of INRAE)
Scientific Manager of LICA (Tree Cellular Engineering Lab, [https://www6.inrae.fr/lica](https://www6.inrae.fr/lica,))
Assignment manager to the Presidence of INRAE Val de Loire Centre
### Education
- 2019. **DU Integrated Bioinformatics**, Paris Diderot University
- 2002. **HDR in Life Sciences**, Faculty of Sciences, Orleans University
- 1985-1987. **PhD thesis**, Paris VI University, Life Sciences, Plant Biology and Physiology, Experimental Ontogeny Laboratory, fellowship from the French Research Ministry
- 1984. **MS degree in Plant Biology and Physiology**, Paris VI University
### Professional experiences
- November 1991-present. Research scientist at INRA, now INRAE, BioForA UMR (previously AGPF), Val de Loire Centre
- 1989-1991. Research Associate, Conifer Biotechnology Lab, Plant Biotechnology Institute, NRCC, Saskatoon, Saskatchewan, Canada
- 1988. Post-doctoral position, Molecular Genetic Laboratory, Biological Science Division, NRCC, Ottawa, Ontario, Canada, Summit Canadian fellowship.
### Academic associations
- 2009 : elected at the “International Academy of Wood Science”
### Research area / technical skills
- Identification of the molecular mechanisms responsible for the tension stresses present in the cell walls of tension wood fibres. Collaborations with LMGC (CNRS-Montpellier) and ECOFOG (INRAE CNRS UMR in French Guyana, ANR Blanc project ‘Stress in Trees’, PhD of Fernanda Guedes and Amra Secerovic)
- Effects of lignin modifications of GM poplar wood on saccharification efficiency. Collaboration with VIB Ghent, BIA (INRAE Nantes), IJPB (INRAE Versailles), FARE (INRAE Reims)
- Tension wood : lint and saccharification efficiency (FP7 EnergyPoplar EU project, ANR Blanc project ‘Stress in Trees’, regional project ‘OPeNSPeNU’)
- Toward designing a model for secondary cell wall construction in poplar wood fibres (Clément Cuello PhD)
- Implementation on poplar of novel genome editing techniques (PIA Genius project)
Publications
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Changements biochimiques pendant la maturation des paroisWorkshop final du projet ANR Blanc StressInTrees "Approches couplées physiologique et micro-mécanique de la génération des contraintes de maturation dans le bois de tension", Jun 2017, Orléans, France
Communication dans un congrès
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Characterization of a poplar GM tree with strong alterations in growth and wood anatomy: transgene expression level vs insertion site effects?IUFRO Tree Biotech 2017, Jun 2017, Concepcion, Chile
Communication dans un congrès
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Effects of CTL2 down-regulation on tension wood formation in GM poplars14. Cell Wall Meeting, Jun 2016, Chania, Greece
Communication dans un congrès
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Evaluation of non-cellulosic polysaccharide distribution in differentiating and mature poplar tension wood fibres: abundance of rhamnogalacturonan I, presence of acetylated glucomannan and absence of xyloglucan in the G-layer8. Plant Biomechanics International Conference PBM8, Nov 2015, Nagoya, Japan
Communication dans un congrès
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Both ChIP-SEQ and in planta gene modification demonstrate the involvement of MYB090 and MYB156 in secondary cell wall formation in poplarINUPRAG-Meeting 2015, Oct 2015, Nancy, France
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Peut-on évaluer le bois de tension par spectrométrie proche infrarouge ?15. rencontres HélioSpir « Aux frontières du proche infrarouge », Oct 2014, Montpellier, France
Communication dans un congrès
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β-Galactosidase : un rôle dans les couches G du bois de tension ?10. Congrès Réseau Français des Parois, Jul 2014, Amiens, France
Communication dans un congrès
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Searching for polysaccharides specific to tension wood fibers7. Plant Biomechanics International Conference, Institut National de Recherche Agronomique (INRA). UMR UMR INRA / Univ. Clermont 2 : Physiologie Intégrée de l'Arbre Fruitier et Forestier (PIAF) (0547)., Aug 2012, Clermont-Ferrand, France
Communication dans un congrès
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Science, society and biosafety of a field trial with transgenic biofuel poplarsIUFRO Tree Biotechnology Conference 2011: From Genomes to Integration and Delivery, International Union of Forest Research Organisations (IUFRO). AUT., Jun 2011, Bahia, Brazil. 199 p
Communication dans un congrès
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Identification of the in vivo DNA targets of transcription factors involved in tension wood formationWorkshop "Systems biology for plant design", Jul 2009, Wageningen, Netherlands
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Whole-genome transcriptomic analysis of xylem tissues for two poplar genotypes of contrasted tolerance to water deficit submitted to various drought conditions.2nd Poplar Symposium From Genes to Function, Mar 2009, Göttingen, Germany. n.p
Communication dans un congrès
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Whole-genome transcriptomic analysis of xylem tissues for two poplar genotypes of contrasted tolerance to water deficit submitted to various drought conditions2. Poplar symposium, Mar 2009, Göttingen, Germany. 1 p
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Effects of water stress and rewatering during tension wood formation on xylem cell differentiation2009 IUFRO Tree Biotechnology Conference, Jun 2009, Whistler, BC, Canada
Communication dans un congrès
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Genome-wide analysis of the fasciclin-like arabinogalactan (FLA) gene family in Populus trichocarpa and their expression profiling in tension woodWorkshop "Systems biology for plant design", Jul 2009, Wageningen, Netherlands
Communication dans un congrès
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Kinetic assessment of global gene expression changes during tension wood formation in poplarIUFRO - Tree Biotechnology 2007, Jun 2007, Ponta Delgada, Azores, Portugal
Communication dans un congrès
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Physiological and molecular aspects of wood formation in poplar trees under both a water stress and a mechanical constraintIUFRO - Tree Biotechnology 2007, Jun 2007, Ponta Delgada, Azores, Portugal
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Recherche de facteurs de transcription impliqués dans la différenciation des fibres G du bois de tension chez le peuplier : analyse de l'expression des gènes de la famille LIM9. Journées du Groupe de Biologie Moléculaire des Ligneux, Mar 2006, Orléans, France
Communication dans un congrès
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Recherche de facteurs de transcription impliqués dans la différenciation des fibres G du bois de tension chez le peuplier8. Journées "Biologie Moléculaire des Ligneux", May 2004, Clermont-Ferrand, France
Communication dans un congrès
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Transgenic poplar and the poplar leaf beetle: state-of-the-art on the risk of evolution of insect resistance22. session international poplar commission: The contribution of poplars and willows to sustainable forestry and rural development, Nov 2004, Santiago, Chile. p. 6
Communication dans un congrès
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Approche génomique de la formation du bois chez le peuplier8. Journées "Biologie Moléculaire des Ligneux", May 2004, Clermont-Ferrand, France
Communication dans un congrès
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Genomics and tension wood formation : toward an understanding of Populus adaptation to mechanical stress12. New Phytologist Symposium, Oct 2004, Gatlinburg, Tennessee, United States
Communication dans un congrès
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Stability of transgene expression in trees3. Colloque général de la Société Française de Physiologie Végétale, Dec 1997, Toulouse, France
Communication dans un congrès
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Modification of lignin composition and content in poplar via genetic engineering5. International congress of plant molecular biology, Sep 1997, Singapour, Singapore
Communication dans un congrès
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Agrobacterium-mediated transformation of hybrid larch and production of transgenic plantsJoint meeting of the IUFRO working parties 2.04-07 and 2.04-07, Aug 1997, Québec, Canada
Communication dans un congrès
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High yield Agrobacterium-mediated transformation of hybrid larch and rapid production of transgenic plants3. Colloque général de la Société Française de Physiologie Végétale, Dec 1997, Toulouse, France
Communication dans un congrès
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Molecular tools to study lignin biosynthesis in poplar5. International congress of plant molecular biology, Sep 1997, Singapour, Singapore
Communication dans un congrès
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Transgenic poplar trees with altered lignin and improved pulping characteristicsBiological sciences symposium, Oct 1997, San Francisco, United States
Communication dans un congrès
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Agrobacterium-mediated transformation of hybrid larch and production of transgenic plantsBiological sciences symposium, Oct 1997, San Francisco, United States
Communication dans un congrès
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Modification of lignin composition and content in poplar via genetic engineering3. Colloque général de la Société Française de Physiologie Végétale, Dec 1997, Toulouse, France
Communication dans un congrès
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Molecular tools to study lignin biosynthesis in poplar2. Forum for applied biotechnology, Sep 1997, Gand, Belgium
Communication dans un congrès
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Modification of lignin composition an content in poplar via genetic engineeringJoint meeting of the IUFRO working parties 2.04-07 and 2.04-07, Aug 1997, Québec, Canada
Communication dans un congrès
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Understanding lignin biosynthesis in poplar through genetic engineeringJoint meeting of the IUFRO working parties 2.04-07 and 2.04-07, Aug 1997, Québec, Canada
Communication dans un congrès
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Gene silencing and the stability of transgene expression in treesJoint meeting of the IUFRO working parties 2.04-07 and 2.04-07, Aug 1997, Québec, Canada
Communication dans un congrès
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Stability and variation of transgene expression in poplar16. Annual meeting of the Natural Environment Research Council, Tree Biotechnology Liaison Group, Apr 1996, Bath, United Kingdom
Communication dans un congrès
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Genetic engineering of lignin biosynthesis in poplarIUFRO Working PartiesSomatic Cell Genetics S2.04-07. Molecular Genetics S2.04-06, Sep 1995, Gent, Belgium
Communication dans un congrès
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Techniques de transformation génétique chez les angiospermesAtelier no 4, Sep 1995, Marnes la Coquette, France
Communication dans un congrès
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Expression of a proteinase inhibitor and a Bacillus thuringiensis delta-endotoxin in transgenic poplarsIUFRO Working Parties : Somatic Cell Genetics S2.04-07 and Molecular Genetics S2.04-06;Joint meeting of the IUFRO : working parties S.04-07 and S.04-06, Sep 1995, Gent, Belgium
Communication dans un congrès
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Genetic engeneering of poplar trees may be used to improve their tolerance toward insects or to alter their lignin metabolism5. Annual Queenstown molecular biology meeting, Aug 1995, Queenstown, New Zealand
Communication dans un congrès
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Expression of proteinase inhibitors in transgenic poplar and oilseed rape plantsConférence de l'"Association of applied biologists", Jul 1995, Versailles, France
Communication dans un congrès
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Modification of lignin quality in transgenic poplarsConférence de l'Association of Applied Biologists, Jul 1995, Versailles, France
Communication dans un congrès
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Genetic engineering of lignin biosynthesis in poplarJoint meeting of the IUFRO International Union of Forestry Research Organizations, Sep 1995, Gent, Belgium
Communication dans un congrès
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Peut-on planter des peupliers transgéniques ? Cas de la résistance aux insectesSéminaire du CTPS, Jan 1995, Paris, France
Communication dans un congrès
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Stability and expression of foreign genes in poplar2. general colloquium on plant sciences, Oct 1994, St Malo, France
Communication dans un congrès
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Toxicity to Chrysomela tremulae (Coleoptera : Chrysomelidae) of transgenic poplars expressing a cysteine proteinase inhibitor gene6. Workshop of the IUFRO-Molecular genetics of forest trees, May 1994, Portland, United States
Communication dans un congrès
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Modification of the lignin pool in poplar trees by transfer of antisense gene of O-methyltransferase (OMT) and cinnamyl alcohol dehydrogenase (CAD)2. general colloquium on plant sciences, Oct 1994, St Malo, France
Communication dans un congrès
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Transgenic poplars expressing a cysteine proteinase inhibitor are toxic to coleopterous2. international symposium on the applications of biotechnology to tree culture, protection, and utilization, Oct 1994, Bloomington, United States
Communication dans un congrès
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Manipulation of lignin composition in transgenic poplar trees by antisense strategy6. Workshop of the IUFRO-Molecular genetics of forest trees, May 1994, Portland, United States
Communication dans un congrès
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Transgenic poplars expressing protease inhibitors and a Bacillus thuringiensis delta-endotoxin6. congrès international de phytopathologie, Jul 1993, Montréal, Canada
Communication dans un congrès
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Unraveling the function of MYB090 and MYB156 in secondary cell wall formation in poplar using both ChIP-SEQ and in planta gene modification approachXIV Cell Wall Meeting, Jun 2016, Chania, Grèce. , 2016, XIV Cell Wall Meeting. Programme and Book of Abstracts
Poster de conférence
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High throughput evaluation of tension wood proportion in poplar stem using near infrared spectroscopyNIR2015Brazil; 17. international conference on Near Infrared Spectroscopy, Oct 2015, Foz do Iguassu, Brazil. , 2015, NIR 2015 Brazil. Book of abstracts. 17th International Conference on Near Infrared Spectroscopy
Poster de conférence
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Integration of transcriptomic and proteomics approaches in characterizing short-term gravi-perception signaling networks in poplar wood.8. Plant Biomechanics International Conference PBM8, Nov 2015, Nagoya, Japan. Nagoya University, Proceedings of the Plant Biomechanics Conference, 253 p., 2015, 8th Plant Biomechanics International Conference
Poster de conférence
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β-Galactosidases : un rôle dans les couches G du bois de tension ?Journées scientifiques du GDR 3544 « Sciences du Bois », Nov 2014, Nancy, France. 2014
Poster de conférence
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Genome-wide characterisation of mechanical stress responsive miRNAs from xylem tissues of different poplar genotypes13. Cell Wall Meeting, Jul 2013, Nantes, France. 2013, The 13th Cell Wall Meeting : abstract book
Poster de conférence
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Biochemical and histochemical characterization of the polysaccharides present in the G-layer of wild type and AGP-modified transgenic poplars13. Cell Wall Meeting, Jul 2013, Nantes, France. 2013, The 13th Cell Wall Meeting : abstract book
Poster de conférence
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Both ChIP-SEQ and in planta gene modification indicate a function of PtaMYB221in lignin biosynthesis and secondary cell wall formation in poplar13. Cell Wall Meeting, Jul 2013, Nantes, France. 2013, The 13th Cell Wall Meeting : abstract book
Poster de conférence
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Identification of miRNAs and their target genes in developing xylem of tension wood by degradome analysis13. Cell Wall Meeting, Jul 2013, Nantes, France. 2013, The 13th Cell Wall Meeting : abstract book
Poster de conférence
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Identification, cibles et diversité de régulateurs expressionnels majeurs impliqués dans la production de biomasse chez le peuplierSéminaire AIP Bio-ressources, Feb 2013, Paris, France. 2013, ⟨10.13140/RG.2.1.3449.0403⟩
Poster de conférence
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Identification in vivo des ADN cibles de facteurs de transcription impliqués dans la formation du bois de tensionJournées du Réseau Français des Parois, Jun 2011, Villeneuve d’Ascq, France. , 2011, Journées du Réseau Français des Parois. Programme et Résumés
Poster de conférence
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Populus Genome PortalPoster de conférence hal-02820105v1 |
Molecular bases of acclimation and adaptation to water deficit in poplarPoster de conférence hal-02822891v1 |
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Growth and survival of Chrysomela tremulae (Coleoptera, Chrysomelidae) on transgenic poplar containing a Bacillus thuringiensis delta-endotoxine geneIUFRO Joint Meeting WPS 7.03.06 - WP 2.7.03.07. Population dynamics, impacts and integrated management of forest defoliating insects, Aug 1996, Banska Stiavnica, El Salvador. 1 p., 1996
Poster de conférence
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Scientific research related to genetically modified treesChallenges and opportunities for the world’s forests in the 21st century, Section 6. Biotechnological approaches, 81, Editions Springer, 2014, Forestry Sciences, 978-94-007-7076-8. ⟨10.1007/978-94-007-7076-8_22⟩
Chapitre d'ouvrage
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Field Trials with Lignin-Modified Transgenic Trees. Chapter 1Lignins — Biosynthesis, Biodegradation and Bioengineering, 61, Academic Press - Elsevier, 2012, Advances in Botanical Research, 978-0-12-416023-1. ⟨10.1016/B978-0-12-416023-1.00001-X⟩
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Comparison of the consequences on lignin content and structure of COMT and CAD downregulation in poplar and Arabidopsis thalianaPlantation Forest Biotechnology for the 21st Century, Research Signpost, 2004, 81-7736-228-3
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Transgenic Poplar Trees (Populus Species)Transgenic Trees, 44, Springer Verlag, 1999, Biotechnology in Agriculture and Forestry, 3-540-65393-7
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Transgenic Larch (Larix Species)Transgenic Trees, 44, Springer Verlag, 1999, Biotechnology in Agriculture and Forestry, 3-540-65393-7
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Genetic modification of lignin biosynthesis in quaking aspen and poplarSection V. Biotechnological applications chap. 26. 1997
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