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43

Germain Forestier


I'm a Full Professor of Computer Science at the Univ. of Haute-Alsace, France and a data scientist with a special interest in processing temporal data (time series and symbolic sequences), images and videos. I mostly apply my work to surgical data science, digital pathology and geosciences. I also like to play with deep learning.

Find more information about my work on my personnal page: https://germain-forestier.info/


Article dans une revue31 documents

  • Germain Forestier, François Petitjean, Pavel Senin, Fabien Despinoy, Arnaud Huaulmé, et al.. Surgical motion analysis using discriminative interpretable patterns. Artificial Intelligence in Medicine, 2018, 〈10.1016/j.artmed.2018.08.002〉. 〈hal-01880048〉
  • Arnaud Huaulmé, Kanako Harada, Germain Forestier, Mamoru Mitsuishi, Pierre Jannin. Sequential surgical signatures in micro-suturing task. International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, In press, 〈10.1007/s11548-018-1775-x〉. 〈hal-01791310〉
  • Fabien Despinoy, Nabil Zemiti, Germain Forestier, Luis Alonso Sanchez Secades, Pierre Jannin, et al.. Evaluation of Contactless Human-Machine Interface for Robotic Surgical Training. International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2018, 13 (1), pp.13-24. 〈10.1007/s11548-017-1666-6〉. 〈lirmm-01577226〉
  • Germain Forestier, Laurent Riffaud, François Petitjean, Pierre-Louis Henaux, Pierre Jannin. Surgical skills: Can learning curves be computed from recordings of surgical activities?. International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2018, 13 (5), pp.629-636. 〈10.1007/s11548-018-1713-y〉. 〈hal-01807121〉
  • Bernard Gibaud, Germain Forestier, Carolin Feldmann, Giancarlo Ferrigno, Paulo Gonçalves, et al.. Toward a standard ontology of surgical process models. International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2018, 13 (9), pp.1397-1408. 〈10.1007/s11548-018-1824-5〉. 〈hal-01862533〉
  • Thomas Lampert, Thi-Bich-Hanh Dao, Baptiste Lafabregue, Nicolas Serrette, Germain Forestier, et al.. Constrained distance based clustering for time-series: a comparative and experimental study. Data Mining and Knowledge Discovery, Springer, In press, 32 (6), pp.1663 - 1707. 〈10.1007/s10618-018-0573-y〉. 〈hal-01831637〉
  • Germain Forestier, François Petitjean, Laurent Riffaud, Pierre Jannin. Automatic matching of surgeries to predict surgeons next actions. Artificial Intelligence in Medicine, Elsevier, 2017, 81, pp.3 - 11. 〈10.1016/j.artmed.2017.03.007〉. 〈hal-01499246v2〉
  • Germain Forestier, François Petitjean, Pavel Senin, Laurent Riffaud, Pierre-Louis Hénaux, et al.. Finding discriminative and interpretable patterns in sequences of surgical activities. Artificial Intelligence in Medicine, Elsevier, 2017, 82, pp.11-19. 〈10.1016/j.artmed.2017.09.002〉. 〈hal-01639834〉
  • Arnaud Huaulmé, Sandrine Voros, Laurent Riffaud, Germain Forestier, Alexandre Moreau-Gaudry, et al.. Distinguishing surgical behavior by sequential pattern discovery. Journal of Biomedical Informatics, Elsevier, 2017, 67, pp.34 - 41. 〈10.1016/j.jbi.2017.02.001〉. 〈hal-01470402〉
  • Nadine Schaadt, Juan Carlos López Alfonso, Ralf Schönmeyer, Anne Grote, Germain Forestier, et al.. Image analysis of immune cell patterns in the human mammary gland during the menstrual cycle refines lymphocytic lobulitis. Breast Cancer Research and Treatment, Springer Verlag, 2017, 164 (2), pp.305 - 315. 〈10.1007/s10549-017-4239-z〉. 〈hal-01875860〉
  • Juan Carlos López Alfonso, Nadine Schaadt, Ralf Schönmeyer, Nicolas Brieu, Germain Forestier, et al.. In-silico insights on the prognostic potential of immune cell infiltration patterns in the breast lobular epithelium. Scientific Reports, Nature Publishing Group, 2016, 6 (1), 〈10.1038/srep33322〉. 〈hal-01878620〉
  • Germain Forestier, Cédric Wemmert. Semi-supervised learning using multiple clusterings with limited labeled data. Information Sciences, Elsevier, 2016, 361–362, pp.48-65. 〈10.1016/j.ins.2016.04.040〉. 〈hal-01355189v2〉
  • François Petitjean, Germain Forestier, Geoffrey Webb, Ann Nicholson, Yanping Chen, et al.. Faster and more accurate classification of time series by exploiting a novel dynamic time warping averaging algorithm. Knowledge and Information Systems (KAIS), Springer, 2016, 47, pp.1 - 26. 〈10.1007/s10115-015-0878-8〉. 〈hal-01455034〉
  • Grégory Apou, Nadine Schaadt, Benoît Naegel, Germain Forestier, Ralf Schönmeyer, et al.. Detection of lobular structures in normal breast tissue. Computers in Biology and Medicine, Elsevier, 2016, 74, pp.91-102. 〈10.1016/j.compbiomed.2016.05.004〉. 〈hal-01321053〉
  • Fabien Despinoy, David Bouget, Germain Forestier, Cédric Penet, Nabil Zemiti, et al.. Unsupervised Trajectory Segmentation for Surgical Gesture Recognition in Robotic Training. IEEE Transactions on Biomedical Engineering, Institute of Electrical and Electronics Engineers, 2016, 63 (6), pp.1280-1291. 〈10.1109/TBME.2015.2493100〉. 〈lirmm-01217023〉
  • Germain Forestier, Laurent Riffaud, Pierre Jannin. Automatic phase prediction from low-level surgical activities. International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2015, 10 (6), pp.833-841. 〈10.1007/s11548-015-1195-0〉. 〈hal-01145855v2〉
  • Mariem Mahfoudh, Germain Forestier, Laurent Thiry, Michel Hassenforder. Algebraic graph transformations for formalizing ontology changes and evolving ontologies. Knowledge-Based Systems, Elsevier, 2015, 73, pp.212-226. 〈10.1016/j.knosys.2014.10.007〉. 〈hal-01162612v2〉
  • Alban Gaignard, Johan Montagnat, Bernard Gibaud, Germain Forestier, Tristan Glatard. Domain-specific summarisation of Life-Science e-experiments from provenance traces. Web Semantics: Science, Services and Agents on the World Wide Web, Elsevier, 2014, 17 p. 〈10.1016/j.websem.2014.07.001〉. 〈hal-01027596〉
  • Germain Forestier, Francois Petitjean, Laurent Riffaud, Pierre Jannin. Non-Linear Temporal Scaling of Surgical Processes. Artificial Intelligence in Medicine, Elsevier, 2014, 62 (3), pp.143-152. 〈http://www.sciencedirect.com/science/article/pii/S0933365714001225〉. 〈10.1016/j.artmed.2014.10.007〉. 〈hal-00862978v3〉
  • Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frédéric Cervenansky, Patrick Clarysse, et al.. OntoVIP: An ontology for the annotation of object models used for medical image simulation.. Journal of Biomedical Informatics, Elsevier, 2014, 52, pp.279-92. 〈10.1016/j.jbi.2014.07.008〉. 〈inserm-01062371〉
  • Germain Forestier, Cédric Wemmert, Anne Puissant. Coastal image interpretation using background knowledge and semantics. Computers & Geosciences, Elsevier, 2013, 54, pp.88 - 96. 〈10.1016/j.cageo.2012.11.023〉. 〈hal-01875858〉
  • Tristan Glatard, Carole Lartizien, Bernard Gibaud, Rafael Ferreira da Silva, Germain Forestier, et al.. A virtual imaging platform for multi-modality medical image simulation.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2013, 32 (1), pp.110-8. 〈10.1109/TMI.2012.2220154〉. 〈inserm-00762497〉
  • Germain Forestier, Jordi Inglada, Cédric Wemmert, Pierre Gancarski. Comparison of optical sensors discrimination ability using spectral libraries. International Journal of Remote Sensing, Taylor & Francis, 2013, 34 (7), pp.2327 - 2349. 〈10.1080/01431161.2012.744488〉. 〈hal-01875856〉
  • Germain Forestier, Florent Lalys, Laurent Riffaud, D. Louis Collins, Jurgen Meixensberger, et al.. Multi-site study of surgical practice in neurosurgery based on surgical process models.. Journal of Biomedical Informatics, Elsevier, 2013, 46 (5), pp.822-9. 〈10.1016/j.jbi.2013.06.006〉. 〈inserm-00853846〉
  • Germain Forestier, Anne Puissant, Cédric Wemmert, Pierre Gançarski. Knowledge-based region labeling for remote sensing image interpretation. Computers, Environment and Urban Systems, Elsevier, 2012, 36 (5), pp.470 - 480. 〈10.1016/j.compenvurbsys.2012.01.003〉. 〈hal-01875854〉
  • Germain Forestier, Florent Lalys, Laurent Riffaud, Brivael Trelhu, Pierre Jannin. Classification of surgical processes using dynamic time warping. Journal of Biomedical Informatics, Elsevier, 2012, 45 (2), pp.255-264. 〈10.1016/j.jbi.2011.11.002〉. 〈inserm-00669624v2〉
  • François Petitjean, Florent Masseglia, Pierre Gancarski, Germain Forestier. Discovering Significant Evolution Patterns from Satelllite Image Time Series. International Journal of Neural Systems, World Scientific Publishing, 2011, 21 (6), pp.15. 〈lirmm-00639480〉
  • Germain Forestier, Pierre Gançarski, Cédric Wemmert. Collaborative clustering with background knowledge. Data & Knowledge Engineering, 2010, 69 (2), pp.211 - 228. 〈10.1016/j.datak.2009.10.004〉. 〈hal-01875853〉
  • Sébastien Derivaux, Germain Forestier, Cédric Wemmert, Sébastien Lefèvre. Supervised image segmentation using watershed transform, fuzzy classification and evolutionary computation. Pattern Recognition Letters, Elsevier, 2010, 31 (15), pp.2364-2374. 〈10.1016/j.patrec.2010.07.007〉. 〈hal-00512749v2〉
  • Cédric Wemmert, Anne Puissant, Germain Forestier, Pierre Gancarski. Multiresolution remote sensing image clustering. IEEE Geoscience and Remote Sensing Letters, IEEE - Institute of Electrical and Electronics Engineers, 2009, 6 (3), pp.533-537. 〈10.1109/LGRS.2009.2020825〉. 〈halshs-00520632〉
  • Germain Forestier, Cédric Wemmert, Pierre Gancarski. Multisource Images Analysis Using Collaborative Clustering. EURASIP Journal on Advances in Signal Processing, SpringerOpen, 2008, 2008 (1), 〈10.1155/2008/374095〉. 〈hal-01878610〉

Communication dans un congrès12 documents

  • G. Forestier, F. Petitjean, P. Senin, F. Despinoy, P. Jannin. Discovering Discriminative and Interpretable Patterns for Surgical Motion Analysis. 16th Conference on Artificial Intelligence in Medicine (AIME 2017), Jun 2017, Vienna, Austria. pp.136 - 145, 2017, 〈10.1007/978-3-319-59758-4_15〉. 〈hal-01618931〉
  • Germain Forestier, Francois Petitjean, Laurent Riffaud, Pierre Jannin. Optimal Sub-Sequence Matching for the Automatic Prediction of Surgical Tasks. John H. Holmes, Riccardo Bellazzi, Lucia Sacchi, Niels Peek. 15th Conference on Artificial Intelligence in Medicine (AIME 2015), Jun 2015, Pavie, Italy. Springer, Lecture Notes in Computer Science, pp.123-132, 2015, 〈10.1007/978-3-319-19551-3_15〉. 〈hal-01262692〉
  • Mariem Mahfoudh, Laurent Thiry, Germain Forestier, Michel Hassenforder. Adaptation consistante d'ontologie à l'aide des grammaires de graphes. IC - 24èmes Journées francophones d'Ingénierie des Connaissances, Jul 2013, Lille, France. 2013. 〈hal-01104002〉
  • T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, et al.. Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI. IEEE International Symposium on Biomedical Imaging - ISBI2012, May 2012, Barcelona, Spain. pp.98-101, 2012, 〈10.1109/ISBI.2012.6235493〉. 〈hal-00830243〉
  • Germain Forestier, Florent Lalys, Laurent Riffaud, Brivael Trelhu, Pierre Jannin. Clustering de séquences d'activités pour l'étude de procédures neurochirurgicales. 12e Conférence Internationale Francophone sur l'Extraction et la Gestion des Connaissances, Feb 2012, Bordeaux, France. pp.489-494, 2012. 〈inserm-00670007〉
  • B. Gibaud, G. Forestier, B. Benoit-Cattin, F. Cervenansky, P. Clarysse, et al.. Design of an ontology for the annotation of object models used for medical image simulation. Nouvelles méthodologies en imagerie du vivant, Dec 2012, Lyon, France. 〈hal-00829556〉
  • B. Gibaud, G. Forestier, H. Benoit-Cattin, F. Cervenansky, P. Clarysse, et al.. OntoVIP: an ontology for the annotation of object models used for medical image simulation. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), Sep 2012, La Jolla, United States. pp.110, 2012, 〈10.1109/HISB.2012.35〉. 〈hal-00830912〉
  • Germain Forestier, Florent Lalys, Laurent Riffaud, Brivael Trelhu, Pierre Jannin. Assessment of surgical skills using Surgical Processes and Dynamic Time Warping. M2CAI 2011 (MICCAI workshop) - Modelling and Monitoring of Computer-Assisted Intervention, Sep 2011, Toronto, Canada. 〈inserm-00617017〉
  • Germain Forestier, Jordi Inglada, Cédric Wemmert, Pierre Gancarski. Mining spectral libraries to study sensors' discrimination ability. SPIE Europe Remote Sensing, Aug 2009, Berlin, Germany. 2009, 〈10.1117/12.830392〉. 〈hal-01887503〉
  • Sébastien Derivaux, Germain Forestier, Cédric Wemmert, Sébastien Lefèvre. Extraction de détecteurs d'objets urbains à partir d'une ontologie. Journées Francophones Extraction et Gestion des Connaissances (EGC) Atelier Extraction de COnnaissance à partir d'Images (ECOI),, 2008, Sophia Antipolis, France. 2008. 〈hal-00516099〉
  • Germain Forestier, Cédric Wemmert, Pierre Gancarski. On Combining Unsupervised Classification and Ontology Knowledge. 2008 IEEE International Geoscience and Remote Sensing Symposium (IGARSS 2008), Jul 2008, Boston, United States. IEEE, 2008, 〈10.1109/igarss.2008.4779741〉. 〈hal-01887351〉
  • Nicolas Durand, Sébastien Derivaux, Germain Forestier, Cédric Wemmert, Pierre Gancarski, et al.. Ontology-based Object Recognition for Remote Sensing Image Interpretation. IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2007), Oct 2007, Patras, Greece. IEEE, pp.472-479, 2007, 〈10.1109/ICTAI.2007.111〉. 〈hal-01463170v2〉