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47 résultats
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triés par
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Reconstruction and visualization of genome rearrangements within the KuyveromycesESF-EMBO Symposium on Comparative Genomics of Eukaryotic Microorganisms, Oct 2007, San Feliu de Guixols, Spain. pp.44
Communication dans un congrès
inria-00350567v1
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RNA-Seq read alignments with PALMapper.Curr Protoc Bioinformatics, 2010, Chapter 11, pp.Unit 11.6. ⟨10.1002/0471250953.bi1106s32⟩
Article dans une revue
hal-00909100v1
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DExTaR: Detection of Exact Tandem Repeats based on the de Bruijn graphIEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Nov 2014, Belfast, Ireland. pp.90-93, ⟨10.1109/BIBM.2014.6999134⟩
Communication dans un congrès
hal-01117967v1
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Reconstruction and visualization of genome rearrangements within the KluyveromycesFirst German / French / European Meeting on Yeast and Filamentous Fungi, May 2008, Strasbourg, France
Communication dans un congrès
inria-00350613v1
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Sorting Signed Permutations by Intergenic ReversalsIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020, ⟨10.1109/TCBB.2020.2993002⟩
Article dans une revue
hal-02901617v1
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Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic SizesInternational Symposium on Bioinformatics Research and Applications ISBRA 2019, Jun 2019, Barcelona, Spain. pp.28-39, ⟨10.1007/978-3-030-20242-2_3⟩
Communication dans un congrès
hal-02304027v1
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L'Inférence de Protéines à travers le Modèle Peptide Quantity Assignment23ème congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, INSA Lyon, Feb 2022, Villeurbanne - Lyon, France
Communication dans un congrès
hal-03595308v1
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Hybrid de novo tandem repeat detection using short and long readsBMC Medical Genomics, 2015, 8 (Suppl 3), pp.S5. ⟨10.1186/1755-8794-8-S3-S5⟩
Article dans une revue
hal-01214038v1
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Approximation algorithms for sorting by k-cuts on signed permutationsJournal of Combinatorial Optimization, 2022, 45 (6), ⟨10.1007/s10878-022-00937-z⟩
Article dans une revue
hal-04416193v1
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SyDiG: uncovering Synteny in Distant GenomesInt. J. of Bioinformatics Research and Applications, 2011, pp.43-62. ⟨10.1504/IJBRA.2011.039169⟩
Article dans une revue
hal-00737390v1
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Oqtans: Quantitative transcriptome analysis in the cloud IMeeting on Advances and Challenges of RNA-seq Analysis, Jun 2012, Halle, Germany
Communication dans un congrès
hal-01172014v1
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Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.Bioinformatics, 2014, epub ahead of print. ⟨10.1093/bioinformatics/btt731⟩
Article dans une revue
hal-00965351v1
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Sorting by k-Cuts on Signed PermutationsComparative Genomics 19th International Conference, RECOMB-CG 2022, May 2022, La Jolla, United States. pp.189-204, ⟨10.1007/978-3-031-06220-9_11⟩
Communication dans un congrès
hal-03959780v1
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Sorting by Genome Rearrangements on Both Gene Order and Intergenic SizesJournal of Computational Biology, 2020, 27 (2), pp.156-174. ⟨10.1089/cmb.2019.0293⟩
Article dans une revue
hal-02482109v1
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The Exact Subset MultiCover ProblemTheory and Applications of Models of Computation. TAMC 2022, Sep 2022, Tianjin, China. pp.189-200, ⟨10.1007/978-3-031-20350-3_16⟩
Communication dans un congrès
hal-03958441v1
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Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS DataSeventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Jul 2011, Austria. 12(Suppl 11):A7, ⟨10.1186/1471-2105-12-S11-A7⟩
Communication dans un congrès
hal-00914308v1
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Reconstruction of ancestral genomes within HemiascomycetesYeast Genome 10th Anniversary, Académie Royale des Sciences, des Letters et des Beaux-Arts de Belgique, Sep 2006, Brussels, Belgium
Communication dans un congrès
inria-00407497v1
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Méthode in silico pour la reconstruction d'une architecture ancestrale de génomeJOBIM satellite meeting, Jul 2007, Marseille, France
Communication dans un congrès
inria-00352587v1
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Biological pump processes are driven by microbial networks in the global oligotrophic oceanISME17, Aug 2018, Leipzig, Germany. 2018
Poster de conférence
hal-04021817v1
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Sorting Permutations by Intergenic OperationsIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021, pp.1-1. ⟨10.1109/TCBB.2021.3077418⟩
Article dans une revue
hal-03346838v1
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Algorithmic Aspects of the Maximum Colorful Arborescence ProblemTheory and Applications of Models of Computation - 14th Annual Conference, Apr 2017, Berne, Switzerland. pp.216-230, ⟨10.1007/978-3-319-55911-7_16⟩
Communication dans un congrès
hal-01524069v1
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Sorting by Multi-cut RearrangementsSOFSEM 2021, Jan 2021, Bolzano-Bozen, Italy. pp.593-607, ⟨10.1007/978-3-030-67731-2_43⟩
Communication dans un congrès
hal-03346830v1
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A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions7th International Conference, AlCoB 2020 (Algorithms for Computational Biology ), Apr 2020, Missoula, United States. pp.16-28, ⟨10.1007/978-3-030-42266-0_2⟩
Communication dans un congrès
hal-02528304v1
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The Contig Assembly Problem and Its Algorithmic SolutionsAlgorithms for Next-Generation Sequencing Data, pp. 267-298, 2017
Chapitre d'ouvrage
hal-01819204v1
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In silico methods for genome rearrangement analysis: from identification of common markers to ancestral reconstruction.Other [cs.OH]. Université Sciences et Technologies - Bordeaux I, 2008. English. ⟨NNT : ⟩
Thèse
tel-00350900v2
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Mining the semantics of genome super-blocks to infer ancestral architecturesJournal of Computational Biology, 2009, 16 (9), pp.1267-1284. ⟨10.1089/cmb.2008.0046⟩
Article dans une revue
inria-00414692v1
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DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.eLife, 2014, 4, pp.4:e05255
Article dans une revue
hal-01162697v1
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Approximating Rearrangement Distances with Replicas and Flexible Intergenic RegionsInternational Symposium on Bioinformatics Research and Applications (ISBRA 2023), Oct 2023, Wrocław, Poland. pp.241-254, ⟨10.1007/978-981-99-7074-2_19⟩
Communication dans un congrès
hal-04418179v1
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SpecGlob: rapid and accurate alignment of mass spectra differing from their peptide models by several unknown modifications2022
Pré-publication, Document de travail
hal-03959826v1
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Detection of multiple modifications in mass spectra without any a priori69th ASMS Conference on Mass Spectrometry and Allied Topics, Oct 2021, Philadelphia (PA), United States
Poster de conférence
hal-03959810v1
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