Nombre de documents

20

CV de Géraldine Jean


Article dans une revue11 documents

  • Guillaume Fertin, Géraldine Jean, Andreea Radulescu, Irena Rusu. Hybrid de novo tandem repeat detection using short and long reads. BMC Medical Genomics, BioMed Central, 2015, 8 (Suppl 3), pp.S5. <10.1186/1755-8794-8-S3-S5>. <hal-01214038>
  • Vipin T Sreedharan, Sebastian J Schultheiss, Géraldine Jean, André Kahles, Regina Bohnert, et al.. Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.. Bioinformatics, Oxford University Press (OUP), 2014, epub ahead of print. <10.1093/bioinformatics/btt731>. <hal-00965351>
  • Manu J Dubin, Pei Zhang, Dazhe Meng, Marie-Stanislas Remigereau, Edward J Osborne, et al.. DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.. eLife, eLife Sciences Publication, 2014, 4, pp.4:e05255. <hal-01162697>
  • Tamara Steijger, Josep F Abril, Pär G Engström, Felix Kokocinski, Martin Akerman, et al.. Assessment of transcript reconstruction methods for RNA-seq.. Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. <10.1038/nmeth.2714>. <hal-00909081>
  • Non Renseigné, Tyler Alioto, Jonas Behr, Regina Bohnert, Davide Campagna, et al.. Systematic evaluation of spliced alignment programs for RNA-seq data.. Nature Methods, Nature Publishing Group, 2013, epub ahead of print. <10.1038/nmeth.2722>. <hal-00909047>
  • Géraldine Jean, Macha Nikolski. SyDiG: uncovering Synteny in Distant Genomes. Int. J. of Bioinformatics Research and Applications, 2011, pp.43-62. <10.1504/IJBRA.2011.039169>. <hal-00737390>
  • Xiangchao Gan, Oliver Stegle, Jonas Behr, Joshua G Steffen, Philipp Drewe, et al.. Multiple reference genomes and transcriptomes for Arabidopsis thaliana.. Nature, Nature Publishing Group, 2011, 477 (7365), pp.419-23. <10.1038/nature10414>. <hal-00909088>
  • Géraldine Jean, André Kahles, Vipin T Sreedharan, Fabio De Bona, Gunnar Rätsch. RNA-Seq read alignments with PALMapper.. Curr Protoc Bioinformatics, 2010, Chapter 11, pp.Unit 11.6. <10.1002/0471250953.bi1106s32>. <hal-00909100>
  • Jean-Luc Souciet, Bernard Dujon, Claude Gaillardin, Mark Johnston, Philippe V Baret, et al.. Comparative genomics of protoploid Saccharomycetaceae.. Genome Research, Cold Spring Harbor Laboratory Press, 2009, 19, pp.1696-1709. <10.1101/gr.091546.109>. <inria-00407511>
  • Géraldine Jean, David James Sherman, Macha Nikolski. Mining the semantics of genome super-blocks to infer ancestral architectures. Journal of Computational Biology, Mary Ann Liebert, 2009, 16 (9), pp.1267-1284. <10.1089/cmb.2008.0046>. <inria-00414692>
  • Géraldine Jean, Macha Nikolski. Genome rearrangements: a correct algorithm for optimal capping. Information Processing Letters, Elsevier, 2007, 104 (1), pp.14-20. <10.1016/j.ipl.2007.04.011>. <inria-00274291>

Communication dans un congrès8 documents

  • Guillaume Fertin, Géraldine Jean, Eric Tannier. Genome Rearrangements on both Gene Order and Intergenic Regions. WABI 2016, 2016, Aarhus, Denmark. Algorithms for Bioinformatics. <hal-01334942>
  • Guillaume Fertin, Géraldine Jean, Andreea Radulescu, Irena Rusu. DExTaR: Detection of Exact Tandem Repeats based on the de Bruijn graph. IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Nov 2014, Belfast, Ireland. IEEE, pp.90-93, 2014, Proc. IEEE International Conference on Bioinformatics and Biomedicine. <http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6999134>. <10.1109/BIBM.2014.6999134>. <hal-01117967>
  • Sebastian J Schultheiss, Géraldine Jean. Oqtans: Quantitative transcriptome analysis in the cloud I. Meeting on Advances and Challenges of RNA-seq Analysis, Jun 2012, Halle, Germany. <hal-01172014>
  • Sebastian J Schultheiss, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, et al.. Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Jul 2011, Austria. 12(Suppl 11):A7, 2011, <10.1186/1471-2105-12-S11-A7>. <hal-00914308>
  • Géraldine Jean. Reconstruction and visualization of genome rearrangements within the Kluyveromyces. First German / French / European Meeting on Yeast and Filamentous Fungi, May 2008, Strasbourg, France. 2008. <inria-00350613>
  • Géraldine Jean, David James Sherman, Macha Nikolski. Reconstruction and visualization of genome rearrangements within the Kuyveromyces. ESF-EMBO Symposium on Comparative Genomics of Eukaryotic Microorganisms, Oct 2007, San Feliu de Guixols, Spain. pp.44, 2007. <inria-00350567>
  • Géraldine Jean. Méthode in silico pour la reconstruction d'une architecture ancestrale de génome. JOBIM satellite meeting, Jul 2007, Marseille, France. 2007. <inria-00352587>
  • Géraldine Jean. Reconstruction of ancestral genomes within Hemiascomycetes. Yeast Genome 10th Anniversary, Sep 2006, Brussels, Belgium. 2006. <inria-00407497>

Thèse1 document

  • Géraldine Jean. In silico methods for genome rearrangement analysis: from identification of common markers to ancestral reconstruction.. Other [cs.OH]. Université Sciences et Technologies - Bordeaux I, 2008. English. <tel-00350900v2>