CV

Yuan Zhao, Yanchu Zhao, Shan Zheng, Li Zhao, Wuchang Zhang, et al.. Enhanced resolution of marine viruses with violet side scatter. Cytometry Part A, Wiley, 2022, ⟨10.1002/cyto.a.24674⟩. ⟨hal-03746755⟩

Emmanuel Boss, Anya Waite, Johannes Karstensen, Tom Trull, Frank Muller-Karger, et al.. Recommendations for Plankton Measurements on OceanSITES Moorings With Relevance to Other Observing Sites. Frontiers in Marine Science, Frontiers Media, 2022, 9, ⟨10.3389/fmars.2022.929436⟩. ⟨hal-03746756⟩

Robin Fuchs, Melilotus Thyssen, Véronique Creach, Mathilde Dugenne, Lloyd Izard, et al.. Automatic recognition of flow cytometric phytoplankton functional groups using convolutional neural networks. Limnology and Oceanography: Methods, Association for the Sciences of Limnology and Oceanography, 2022, ⟨10.1002/lom3.10493⟩. ⟨hal-03688058⟩

Caroline Comby, Stéphanie Barrillon, Jean-Luc Fuda, Andrea Doglioli, Roxane Tzortzis, et al.. Measuring vertical velocities with ADCPs in low-energy ocean. Journal of Atmospheric and Oceanic Technology, American Meteorological Society, 2022, ⟨10.1175/JTECH-D-21-0180.1⟩. ⟨hal-03746757⟩

Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, A. A Petrenko, Francesco d'Ovidio, et al.. Impact of moderately energetic fine-scale dynamics on the phytoplankton community structure in the western Mediterranean Sea. Biogeosciences, European Geosciences Union, 2021, 18 (24), pp.6455-6477. ⟨10.5194/bg-18-6455-2021⟩. ⟨hal-03485758⟩

Chaofeng Wang, Haibo Li, Yi Dong, Li Zhao, Gérald Grégori, et al.. Planktonic ciliate trait structure variation over Yap, Mariana, and Caroline seamounts in the tropical western Pacific Ocean. Chinese Journal of Oceanology and Limnology, Springer Verlag, 2021, 39 (5), pp.1705-1717. ⟨10.1007/s00343-021-0476-4⟩. ⟨hal-03661998⟩

Melika Baklouti, Rémi Pagès, Elena Alekseenko, Arnaud Guyennon, Gérald Grégori. On the benefits of using cell quotas in addition to intracellular elemental ratios in flexible-stoichiometry Plankton functional type models. Application to the Mediterranean Sea. Progress in Oceanography, Elsevier, 2021, 197, pp.102634. ⟨10.1016/j.pocean.2021.102634⟩. ⟨hal-03323385⟩

Evelyn Freney, Karine Sellegri, Alessia Nicosia, Jonathan Trueblood, Matteo Rinaldi, et al.. Mediterranean nascent sea spray organic aerosol and relationships with seawater biogeochemistry. Atmospheric Chemistry and Physics, European Geosciences Union, 2021, 18, pp.2301-2323. ⟨10.5194/acp-21-10625-2021⟩. ⟨hal-03115302⟩

Karine Sellegri, Alessia Nicosia, Evelyn Freney, Julia Uitz, Melilotus Thyssen, et al.. Surface ocean microbiota determine cloud precursors. Scientific Reports, Nature Publishing Group, 2021, 11, ⟨10.1038/s41598-020-78097-5⟩. ⟨hal-03107746⟩

Haibo Li, Jun Xuan, Chaofeng Wang, Zhaohui Chen, Gérald Grégori, et al.. Summertime Tintinnid Community in the Surface Waters Across the North Pacific Transition Zone. Frontiers in Microbiology, Frontiers Media, 2021, 12, ⟨10.3389/fmicb.2021.697801⟩. ⟨hal-03323821⟩

Chaofeng Wang, Haibo Li, Yi Dong, Li Zhao, Gérald Grégori, et al.. Planktonic ciliate trait structure variation over Yap, Mariana, and Caroline seamounts in the tropical western Pacific Ocean. Chinese Journal of Oceanology and Limnology, Springer Verlag, 2021, 39 (5), pp.1705-1717. ⟨10.1007/s00343-021-0476-4⟩. ⟨hal-03371431⟩

Yanchu Zhao, Yuan Zhao, Shan Zheng, Li Zhao, Xuegang Li, et al.. Virioplankton distribution in the tropical western Pacific Ocean in the vicinity of a seamount. MicrobiologyOpen, Wiley, 2020, ⟨10.1002/mbo3.1031⟩. ⟨hal-02541082⟩

Chaofeng Wang, Haibo Li, Zhiqiang Xu, Shan Zheng, Qiang Hao, et al.. Difference of planktonic ciliate communities of the tropical West Pacific, the Bering Sea and the Arctic Ocean. Acta Oceanologica Sinica, Springer, 2020, 39 (4), pp.9-17. ⟨10.1007/s13131-020-1541-0⟩. ⟨hal-03115300⟩

Pierre Garreau, Franck Dumas, Stéphanie Louazel, Stéphanie Corréard, Solenn Fercocq, et al.. PROTEVS-MED field experiments: very high resolution hydrographic surveys in the Western Mediterranean Sea. Earth System Science Data, Copernicus Publications, 2020, 12 (1), pp.441-456. ⟨10.5194/essd-12-441-2020⟩. ⟨hal-02495291⟩

Yuan Zhao, Yi Dong, Haibo Li, Shiquan Lin, Lingfeng Huang, et al.. Grazing by microzooplankton and copepods on the microbial food web in spring in the southern Yellow Sea, China. Marine Life Science & Technology, 2020, 2 (4), pp.442-455. ⟨10.1007/s42995-020-00047-x⟩. ⟨hal-03115298⟩

Francesco d'Ovidio, Ananda Pascual, Jinbo Wang, Andrea M. Doglioli, Zhao Jing, et al.. Frontiers in Fine-Scale in situ Studies: Opportunities During the SWOT Fast Sampling Phase. Frontiers in Marine Science, Frontiers Media, 2019, 6, pp.168. ⟨10.3389/fmars.2019.00168⟩. ⟨hal-02124793⟩

Sandrine Chifflet, Marianne Quemeneur, Aude Barani, Bernard Angeletti, Morgane Didry, et al.. Impact of sterilization methods on dissolved trace metals concentrations in complex natural samples: optimization of UV irradiation. MethodsX, Elsevier, 2019, 6, pp.1133-1146. ⟨10.1016/j.mex.2019.04.020⟩. ⟨hal-02128494⟩

Haibo Li, Chaofeng Wang, Chen Liang, Yuan Zhao, Wuchang Zhang, et al.. Diversity and distribution of tintinnid ciliates along salinity gradient in the Pearl River Estuary in southern China. Estuarine, Coastal and Shelf Science, Elsevier, 2019, 226, pp.106268. ⟨10.1016/j.ecss.2019.106268⟩. ⟨hal-02185988⟩

Louise Rousselet, A. M. Doglioli, Alain de Verneil, Alice Pietri, Alice Della Penna, et al.. Vertical motions and their effects on a biogeochemical tracer in a cyclonic structure finely observed in the Ligurian Sea. Journal of Geophysical Research. Oceans, Wiley-Blackwell, 2019, 124 (6), pp.3561-3574. ⟨10.1029/2018JC014392⟩. ⟨hal-02124795v2⟩

Kojadinovic-Sirinelli Mila, Villain Adrien, Puppo Carine, Fon Sing Sophie, Prioretti Laura, et al.. Exploring the microbiome of the “star” freshwater diatom Asterionella formosa in a laboratory context. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2018, 20 (10), pp.3601-3615. ⟨10.1111/1462-2920.14337⟩. ⟨hal-01863990⟩

Floriane Delpy, Bruno Serranito, Jean-Louis Jamet, Gérald Grégori, Christophe Le Poupon, et al.. "Pico- and nanophytoplankton dynamics in two coupled but contrasting coastal bays in the NW Mediterranean Sea (France)". Estuaries and Coasts, Springer Verlag, In press, 41 (7), pp.2039-2055. ⟨10.1007/s12237-018-0412-9⟩. ⟨hal-01783525⟩

Emmanuel Boss, Anya Waite, Frank Muller-Karger, Hidekatsu Yamazaki, Rik Wanninkhof, et al.. Beyond Chlorophyll Fluorescence: The Time is Right to Expand Biological Measurements in Ocean Observing Programs. Limnology and Oceanography Bulletin, American Society of Limnology and Oceanography, 2018, 27 (3), pp.89-90. ⟨10.1002/lob.10243⟩. ⟨hal-02024177⟩

Pierre Marrec, Gérald Grégori, Andrea M. Doglioli, Mathilde Dugenne, Alice Della Penna, et al.. Coupling physics and biogeochemistry thanks to high-resolution observations of the phytoplankton community structure in the northwestern Mediterranean Sea. Biogeosciences, European Geosciences Union, 2018, 15 (5), pp.1579 - 1606. ⟨10.5194/bg-15-1579-2018⟩. ⟨hal-01735426⟩

Chen Liang, Haibo Li, Yi Dong, Yuan Zhao, Zhencheng Tao, et al.. Planktonic ciliates in different water masses in open waters near Prydz Bay (East Antarctica) during austral summer, with an emphasis on tintinnid assemblages. Polar Biology, Springer Verlag, 2018, 41 (11), pp.2355-2371. ⟨10.1007/s00300-018-2375-5⟩. ⟨hal-02024248⟩

Karine Leblanc, Bernard Queguiner, Frederic Diaz, Veronique Cornet, Mónica Michel-Rodriguez, et al.. Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export. Nature Communications, Nature Publishing Group, 2018, 9 (1), pp.953. ⟨10.1038/s41467-018-03376-9⟩. ⟨hal-02006275⟩

Gérald Grégori, Michel Denis, Sergio Sgorbati, Sandra Citterio. Resolution of Viable and Membrane-Compromised Free Bacteria in Aquatic Environments by Flow Cytometry. Current Protocols in Cytometry, Wiley, 2018, 85 (1), pp.e42. ⟨10.1002/cpcy.42⟩. ⟨hal-01836037⟩

R. Leroux, Gérald Grégori, F Carlotti, Karine Leblanc, Melilotus Thyssen, et al.. Combining laser diffraction, flow cytometry and optical microscopy to characterize a nanophytoplankton bloom in the Northwestern Mediterranean. Progress in Oceanography, Elsevier, 2018, 163, pp.248-259. ⟨10.1016/j.pocean.2017.10.010⟩. ⟨hal-01638096⟩

Laura Prioretti, Luisana Avilan, Fredéric Carrière, Marie-Helene Montane, Ben Field, et al.. The inhibition of TOR in the model diatom Phaeodactylum tricornutum promotes a get-fat growth regime. Algal Research - Biomass, Biofuels and Bioproducts, Elsevier, 2017, 26, pp.265 - 274. ⟨10.1016/j.algal.2017.08.009⟩. ⟨hal-01696878⟩

Adrien Villain, Mila Kojadinovic, Carine Puppo, Laura Prioretti, Pierre Hubert, et al.. Complete mitochondrial genome sequence of the freshwater diatom Asterionella formosa. Mitochondrial DNA Part B Resources, Taylor & Francis Online, 2017, 2 (1), pp.97 - 98. ⟨10.1080/23802359.2017.1285210⟩. ⟨hal-01760365⟩

Emilio Garcia-Robledo, Cory C Padilla, Montserrat Aldunate, Frank J Stewart, Osvaldo Ulloa, et al.. Cryptic oxygen cycling in anoxic marine zones.. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2017, 114 (31), pp.8319-8324. ⟨10.1073/pnas.1619844114⟩. ⟨hal-01580084⟩

William Moutier, Lucile Duforêt-Gaurier, Melilotus Thyssen, Hubert Loisel, Xavier Meriaux, et al.. Evolution of the scattering properties of phytoplankton cells from flow cytometry measurements. PLoS ONE, Public Library of Science, 2017, 12 (7), ⟨10.1371/journal.pone.0181180⟩. ⟨hal-01622002⟩

Mathias Girault, Gérald Grégori, Aude Barani, Hisayuki Arakawa. A study of microphytoplankton and cyanobacteria consortia in four oligotrophic regimes in the western part of the North Pacific subtropical gyre and in the warm pool. Journal of Plankton Research, Oxford University Press (OUP), 2016, 38 (5), pp.1317-1333. ⟨10.1093/plankt/fbw056⟩. ⟨hal-01389082⟩

Sophie Bonnet, Hugo Berthelot, Kendra Turk-Kubo, Veronique Cornet, Sarah Fawcett, et al.. Diazotroph derived nitrogen supports diatom growth in the South West Pacific: A quantitative study using nanoSIMS. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2016, 61 (5), pp.1549-1562. ⟨10.1002/lno.10300⟩. ⟨hal-01443231⟩

B. Céa, Dominique Lefèvre, L. Chirurgien, Patrick Raimbault, N. Garcia, et al.. An annual survey of bacterial production, respiration and ectoenzyme activity in coastal NW Mediterranean waters: temperature and resource controls. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (18), pp.13654-13668. ⟨10.1007/s11356-014-3500-9⟩. ⟨hal-01199850⟩

Manon Vinay, Nathalie Franche, Gérald Grégori, Jean-Raphaël Fantino, Flavie Pouillot, et al.. Phage-Based Fluorescent Biosensor Prototypes to Specifically Detect Enteric Bacteria Such as E. coli and Salmonella enterica Typhimurium. PLoS ONE, Public Library of Science, 2015, 10 (7), pp.1-17. ⟨10.1371/journal.pone.0131466⟩. ⟨hal-01201336⟩

M. Girault, H. Arakawa, Aude Barani, H. J. Ceccaldi, F. Hashihama, et al.. Heterotrophic prokaryote distribution along a 2300 km transect in the North Pacific subtropical gyre during a strong La Nina conditions: relationship between distribution and hydrological conditions. Biogeosciences, European Geosciences Union, 2015, 12 (11), pp.3607-3621. ⟨10.5194/bg-12-3607-2015⟩. ⟨hal-01178745⟩

Melilotus Thyssen, Gérald Grégori, Jean-Michel Grisoni, Maria-Luiza Pedrotti, Laure Mousseau, et al.. Onset of the spring bloom in the northwestern Mediterranean Sea: influence of environmental pulse events on the in situ hourly-scale dynamics of the phytoplankton community structure. Frontiers in Microbiology, Frontiers Media, 2014, 5, pp.387. ⟨10.3389/fmicb.2014.00387⟩. ⟨hal-01321252⟩

Daniela Bănaru, Francois Carlotti, Aude Barani, Gérald Grégori, Nada Neffati, et al.. Seasonal variation of stable isotope ratios of size-fractionated zooplankton in the Bay of Marseille (NW Mediterranean Sea). Journal of Plankton Research, Oxford University Press (OUP), 2014, 36 (1), pp.145-156. ⟨10.1093/plankt/fbt083⟩. ⟨hal-00872768⟩

Mathilde Dugenne, Melilotus Thyssen, David Nerini, Claude Manté, Jean-Christophe Poggiale, et al.. Consequence of a sudden wind event on the dynamics of a coastal phytoplankton community: an insight into specific population growth rates using a single cell high frequency approach. Frontiers in Microbiology, Frontiers Media, 2014, 5, ⟨10.3389/fmicb.2014.00485⟩. ⟨hal-01146092⟩

Mercedes Camps, Aude Barani, Gérald Grégori, Agnes Bouchez, Brigitte Le Berre, et al.. Antifouling Coatings Influence both Abundance and Community Structure of Colonizing Biofilms: a Case Study in the Northwestern Mediterranean Sea. Applied and Environmental Microbiology, American Society for Microbiology, 2014, 80 (16), pp.4821-4831. ⟨10.1128/AEM.00948-14⟩. ⟨hal-03183971⟩

M. Girault, H. Arakawa, Aude Barani, H. J. Ceccaldi, F. Hashihama, et al.. Distribution of ultraphytoplankton in the western part of the North Pacific subtropical gyre during a strong La Nina condition: relationship with the hydrological conditions. Biogeosciences, European Geosciences Union, 2013, 10 (9), pp.5947-5965. ⟨10.5194/bg-10-5947-2013⟩. ⟨hal-00872540⟩

Céline Lafabrie, M. Garrido, Christophe Leboulanger, Philippe Cecchi, Gérald Grégori, et al.. Impact of contaminated-sediment resuspension on phytoplankton in the Biguglia lagoon (Corsica, Mediterranean Sea). Estuarine, Coastal and Shelf Science, Elsevier, 2013, 130, pp.70-80. ⟨hal-00872706⟩

David Novo, Gérald Grégori, Bartek Rajwa. Generalized unmixing model for multispectral flow cytometry utilizing nonsquare compensation matrices. Cytometry Part A, Wiley, 2013, 83A (5), pp.508-520. ⟨10.1002/cyto.a.22272⟩. ⟨hal-00807657⟩

Gérald Grégori, Valery Patsekin, Bartek Rajwa, James Jones, Kathy Ragheb, et al.. Hyperspectral cytometry at the single-cell level using a 32-channel photodetector.. Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2012, 81 (1), pp.35-44. ⟨10.1002/cyto.a.21120⟩. ⟨hal-00691181⟩

Li Zhao, Michel Denis, Aude Barani, Beatriz Beker, Claude Manté, et al.. Possible bloom of free trichomes in the Bay of Marseille, NW Mediterranean Sea: an anomaly evidenced by flow cytometry. Journal of Plankton Research, Oxford University Press (OUP), 2012, 34 (8), pp.711-718. ⟨10.1093/plankt/fbs038⟩. ⟨hal-00721512⟩

Li Zhao, Michel Denis, Aude Barani, Beatriz Beker, Claude Manté, et al.. Possible bloom of free trichomes in the Bay of Marseille, NW Mediterranean Sea: an anomaly evidenced by flow cytometry. Journal of Plankton Research, Oxford University Press (OUP), 2012, 34 (8), pp.711-718. ⟨hal-00749091⟩

Hana Trigui, Salma Masmoudi, Céline Brochier-Armanet, Aude Barani, Gérald Grégori, et al.. Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis. Extremophiles, Springer Verlag, 2011, 15, pp.347-358. ⟨10.1007/s00792-011-0364-5⟩. ⟨hal-00598296⟩

M. A. van Dijk, Gérald Grégori, Hans L. Hoogveld, Machteld Rijkeboer, Michel Denis, et al.. Erratum: Optimizing the setup of a flow cytometric cell sorter for efficient quantitative sorting of long filaments.. Cytometry Part A, Wiley, 2011, pp.175-176. ⟨10.1002/cyto.a.21016⟩. ⟨hal-00801539⟩

Anthony Malkassian, David Nerini, M. A. van Dijk, Melilotus Thyssen, Claude Manté, et al.. Functional Analysis and Classification of Phytoplankton Based on data from an Automated Flow Cytometer. Cytometry Part A, Wiley, 2011, 79A, pp.263-275. ⟨10.1002/cyto.a.21035⟩. ⟨hal-00579516⟩

N. E. Topcu, T. Perez, G. Gregori, Mireille L. Harmelin-Vivien. In situ investigation of Spongia officinalis (Demospongiae) particle feeding: Coupling flow cytometry and stable isotope analysis. Journal of Experimental Marine Biology and Ecology, Elsevier, 2010, 389 (1-2), pp.61-69. ⟨hal-01663320⟩

Marie Eichinger, Richard Sempere, Gérald Grégori, Bruno Charrìère, Jean-Christophe Poggiale, et al.. Increased bacterial growth efficiency with environmental variability: results from DOC degradation by bacteria in pure culture experiments. Biogeosciences Discussions, European Geosciences Union, 2010, 7 (6), pp.1861-1876,. ⟨10.5194/bg-7-1861-2010⟩. ⟨hal-01216817⟩

M. A. van Dijk, Gérald Grégori, Hans L. Hoogveld, Machteld Rijkeboer, Michel Denis, et al.. Optimizing the Setup of a Flow Cytometric Cell Sorter for Efficient Quantitative Sorting of Long Filamentous Cyanobacteria. Cytometry Part A, Wiley, 2010, 77A, pp.911-924. ⟨10.1002/cyto.a.20946⟩. ⟨hal-00591647⟩

Marie Eichinger, Richard Sempere, Gérald Grégori, Bruno Charrìère, Jean-Christophe Poggiale, et al.. Increased bacterial growth efficiency with environmental variability : results from DOC degradation by bacteria in pure culture experiments. Biogeosciences Discussions, European Geosciences Union, 2010, 7, pp.787-822. ⟨hal-00514543⟩

Nur Eda Tpoçu, T. Pérez, Gérald Grégori, Mireille Harmelin-Vivien. In situ investigation of Spongia officinalis (Demospongiae) particle feeding : coupling flow cytometry and stable isotope analysis. Journal of Experimental Marine Biology and Ecology, Elsevier, 2010, 389, pp.61-69. ⟨10.1016/1.jembe.2010.03.017⟩. ⟨hal-00591458⟩

Marie Eichinger, Sebastian, A.L.M. Kooijman, Richard Sempere, Dominique Lefèvre, Gérald Grégori, et al.. Consumption and release of dissolved organic carbon by marine bacteria in a pulsed-substrate environment : from experiments to modelling. Aquatic Microbial Ecology, Inter Research, 2009, 56, pp.41-54. ⟨10.3354/ame01312⟩. ⟨hal-00403773⟩

Melilotus Thyssen, Glen A. Tarran, Mikhail V. Zubkov, Ross J. Holland, Gérald Grégori, et al.. The emergence of automated high-frequency flow cytometry: revealing temporal and spatial phytoplankton variability. Journal of Plankton Research, Oxford University Press (OUP), 2008, 30, pp.333-343. ⟨10.1093/plankt/fbn005⟩. ⟨hal-00691254⟩

Connie Snider, Sang-Youp Lee, Yoon Yeo, Gérald Grégori, J. Paul Robinson, et al.. Microenvironment-controlled encapsulation (MiCE) process: Effects of PLGA concentration, flow rate, and collection method on microcapsule size and morphology. Pharmaceutical Research, American Association of Pharmaceutical Scientists, 2008, 25, pp.5-15. ⟨10.1007/s11095-007-9456-4⟩. ⟨hal-00691772⟩

Solange Duhamel, Gérald Grégori, France van Wambeke, Jiri Nedoma. Detection of Extracellular Phosphatase Activity at the Single-Cell Level by Enzyme-Labeled Fluorescence and Flow Cytometry : the Importance of Time Kinetics in ELFA Labeling. Cytometry Part A, Wiley, 2008, 75A, pp.169-168. ⟨10.1002/cyto.a.20686⟩. ⟨hal-00363524⟩

Solange Duhamel, Gérald Grégori, France van Wambeke, Romain Mauriac, Jiri Nedoma. A method for analysing phosphatase activity in aquatic bacteria at the single cell level using flow cytometry. Journal of Microbiological Methods, Elsevier, 2008, 75, pp.269-278. ⟨10.1016/j.mimet.2008.06.018⟩. ⟨hal-00321313⟩

Melilotus Thyssen, G. Tarran, M. Zubkov, R. Holland, G. Gregori, et al.. The emergence of automated high-frequency flow cytometry: revealing temporal and spatial phytoplankton variability. Journal of Plankton Research, Oxford University Press (OUP), 2007, 30 (3), pp.333-343. ⟨10.1093/plankt/fbn005⟩. ⟨hal-03112617⟩

Tytus Bernas, Gérald Grégori, Eli K. Asem, J. Paul Robinson. Integrating Cytomics and Proteomics. Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2006, 5.1, pp.2-13. ⟨hal-00087722⟩

Christian Tamburini, J. Garcin, G. Gregori, Karine Leblanc, P. Rimmelin, et al.. Pressure effects on surface Mediterranean prokaryotes and biogenic silica dissolution during a diatom sinking experiment. Aquatic Microbial Ecology, Inter Research, 2006, 43, pp.267-276. ⟨10.3354/ame043267⟩. ⟨hal-00702531⟩

Murugesan Venkatapathi, Gérald Grégori, Kathy Ragheb, J. Paul Robinson, E. Dan Hirleman. Measurement and analysis of angle-resolved scatter from small particles in a cylindrical microchannel. Applied optics, Optical Society of America, 2006, 45, pp.10. ⟨hal-00092687⟩

Ernest R. Blatchley, Chengyue Shen, Zorana Naunovic, Lian-Shin Lin, Dennis A. Lyn, et al.. Dyed microspheres for quantification of UV dose distributions: Photochemical reactor characterization by Lagrangian actinometry. JOURNAL OF ENVIRONMENTAL ENGINEERING-ASCE, 2006, 132, pp.1390-1403. ⟨10.1061/(ASCE)0733-9372(2006)132:11(1390)⟩. ⟨hal-00691764⟩

Bartek Rajwa, Wamiq Ahmed, Murugesan Venkatapathi, Gérald Grégori, Feng Jin, et al.. AOTF-based system for image cytometry. Proceedings of SPIE, the International Society for Optical Engineering, SPIE, The International Society for Optical Engineering, 2005, 5694, pp.16-23. ⟨hal-00092739⟩

Lu Zhou, Gérald Grégori, Jennifer Masella Blackman, J. Paul Robinson, Barry L. Wanner. Stochastic activation of the response regulator PhoB by noncognate histidine kinases. Journal of Integrative Bioinformatics, Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.), 2005, xx, pp.1-13. ⟨hal-00087732⟩

J. Paul Robinson, Bartek Rajwa, Gérald Grégori, James Jones, Valery Patsekin. Multispectral cytometry of single bio-particules using a 32-channel detector. Proceedings of SPIE, the International Society for Optical Engineering, SPIE, The International Society for Optical Engineering, 2005, 5692, pp.359-365. ⟨hal-00092731⟩

Wen-Horng Wang, Gérald Grégori, Ronald L Hullinger, Ourania M Andrisani. Sustained activation of p38 mitogen-activated protein kinase and c-Jun N-terminal kinase pathways by hepatitis B virus X protein mediates apoptosis via induction of Fas/FasL and tumor necrosis factor (TNF) receptor 1/TNF-alpha expression.. Molecular and Cellular Biology, American Society for Microbiology, 2004, 24 (23), pp.10352-65. ⟨10.1128/MCB.24.23.10352-10365.2004⟩. ⟨hal-00692104⟩

Benoit Desnues, Caroline Cuny, Gérald Grégori, Sam Dukan, Hugo Aguilaniu, et al.. Differential oxidative damage and expression of stress defence regulons in culturable and non-culturable Escherichia coli cells. EMBO Reports, EMBO Press, 2003, 4 (4), pp.400-404. ⟨10.1038/sj.embor.embor799⟩. ⟨hal-02025874⟩

Urania Christaki, A Giannakourou, France van Wambeke, Gérald Grégori. Nanoflagellate predation on auto- and heterotrophic picoplankton in the oligotrophic Mediterranean Sea. Journal of Plankton Research, Oxford University Press (OUP), 2001, 23 (11), pp.1297-1310. ⟨10.1093/plankt/23.11.1297⟩. ⟨hal-00801542⟩

Gérald Grégori, S. Citterio, A. Ghiani, M. Labra, S. Sgorbati, et al.. Resolution of viable and membrane-compromised bacteria in freshwater and marine waters based on analytical flow cytometry and nucleic acid double staining.. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (10), pp.4662-70. ⟨10.1128/AEM.67.10.4662-4670.2001⟩. ⟨hal-00151530⟩

Gérald Grégori, A Colosimo, Michel Denis. Phytoplankton group dynamics in the Bay of Marseilles during a 2-year survey based on analytical flow cytometry. Cytometry, Wiley, 2001, 44 (3), pp.247-256. ⟨10.1002/1097-0320(20010701)44:3<247::AID-CYTO1117>3.0.CO;2-Z⟩. ⟨hal-00802074⟩

Melilotus Thyssen, Robin Fuchs, Véronique Créach, Luis Felipe Artigas, Gérald Grégori, et al.. Standard vocabulary, consensual functional groups and automated classification for phytoplankton high throughput datasets using automated flow cytometry. ASLO 2021, Jun 2021, on-line, France. ⟨hal-03419497⟩

Caroline Comby, Stéphanie Barrillon, Jean-Luc Fuda, Andrea M. Doglioli, Roxane Tzortzis, et al.. New insights for direct in situ measurement of oceanic vertical velocities in fine-scale studies.. EGU General Assembly 2021, Apr 2021, online, Austria. ⟨10.5194/egusphere-egu21-4632⟩. ⟨hal-03377993⟩

Jean-Luc Fuda, Stéphanie Barrillon, Nagib Bhairy, Hubert Branger, Caroline Comby, et al.. Une nouvelle approche pour mesurer la composante verticale des courants océaniques. Journées Drones & Capteurs embarqués 2021, Drones & Cap', Sep 2021, Saint-Pierre-d’Oléron, France. ⟨hal-03575152⟩

Pierre Marrec, Cherif Sammari, Anis Ben Ismail, Sana Ben Ismail, Gérald Grégori, et al.. Dynamics of the phytoplankton community structure in the western Mediterranean Sea using automated flow cytometry on a Voluntary Observing Ship during fall/winter.. ASLO 2021, Jun 2021, on-line, France. ⟨hal-03419485⟩

Véronique Creach, Patricia Cabrera, Luis Felipe Artigas, Gérald Grégori, Jean-Olivier Irrisson, et al.. TOWARDS INTEGRATION OF NEW DATA DESCRIBING BIOLOGICAL ESSENTIAL OCEAN VARIABLES FROM MARINE COASTAL ECOSYSTEMS.. ASLO June 2021, Jun 2021, On line, France. ⟨hal-03419320⟩

Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, A. A Petrenko, Francesco d'Ovidio, et al.. Recent progress in the study of fine-scale physical-biological coupling in the Mediterranean Sea.. EGU General Assembly 2021, Apr 2021, Vienne, Austria. ⟨10.5194/egusphere-egu21-7133⟩. ⟨hal-03375405⟩

Mathilde Dugenne, Angelicque White, Gérald Grégori, Melilotus Thyssen, Luis Felipe Artigas, et al.. Recent research developments in automated flow cytometry unravel multiple drivers of aquatic microbial diversity. ASLO 2021, Jun 2021, On-line, France. ⟨hal-03419345⟩

Pierre Marrec, Cherif Sammari, Sana Ben Ismail, Anis Ben Ismail, Gérald Grégori, et al.. Phytoplankton distribution in the Western Mediterranean sea using automated flow cytometry onboard the ferryline "Le Carthage" (CTN). Ferrybox workshop, Mar 2021, On-line, France. ⟨hal-03436582⟩

S. Barrillon, Caroline Comby, Jean-Luc Fuda, Anne Petrenko, Melilotus Thyssen, et al.. Study of fine-scale dynamics and their coupling with biogeochemistry - FUMSECK cruise. EGU General Assembly 2021, Apr 2021, Vienne, Austria. ⟨10.5194/egusphere-egu21-7199⟩. ⟨hal-03375185⟩

Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, Anne Petrenko, Francesco d'Ovidio, et al.. A Lagrangian strategy for in situ sampling the physical-biological coupling at fine scale : the PROTEVSMED-SWOT 2018 cruise. EGU General Assembly 2020, May 2020, On-line, France. ⟨10.5194/egusphere-egu2020-7357⟩. ⟨hal-02968298⟩

Andrea M. Doglioli, Gérald Grégori, Francesco d'Ovidio, Anne Petrenko, Stéphanie Barrillon, et al.. Combining remote sensing and in situ observations to study the physical-biological coupling at fine scale: recent Mediterranean campaigns and outlook.. EGU General Assembly 2020, EGU, May 2020, On line, France. ⟨10.5194/egusphere-egu2020-7356⟩. ⟨hal-02962520⟩

Andrea M. Doglioli, Gérald Grégori, Melilotus Thyssen, Thibaut Wagener, Pierre Marrec, et al.. Mapping the planktonic community across submesoscale physical features: the 2015 OSCAHR cruise in the NW Mediterranean. 48th International Liège Colloquium on Ocean Dynamics, May 2016, Liège, Belgium. ⟨hal-01345522⟩

Mercedes Camps, Gérald Grégori, Agnes Bouchez, Aude Barani, Brigitte Le Berre, et al.. Antifouling coatings : in vitro bioassay vs marine biofilm communities. 16th International Congress on Marine Corrosion and Fouling, Comité International Permanent pour la Recherche sur la Préservation des Matériaux en Milieu Marin ((COIPM).). Seattle, INT., Jun 2012, Seattle, United States. ⟨hal-02805263⟩

Mercedes Camps, Gérald Grégori, Agnes Bouchez, Aude Barani, Brigitte Le Berre, et al.. Marine biofilm communities colonizing antifouling paints in the Mediterranean Sea. 14th International Congress : The power of the small, International Society for Microbial Ecology (ISME). Copenhagen, INT., Aug 2012, Copenhagen, Denmark. ⟨hal-02807526⟩

Anthony Malkassian, Claude Manté, Melilotus Thyssen, David Nerini, Fabrice Garcia, et al.. Suivi in situ et à haute fréquence de la dynamique des assemblages phytoplanctoniques dans l'étang de Berre. Lagun'R - Rencontres scientifiques autour de l'étang de Berre, Mar 2011, Aix-en-Provence, France. pp.183-192. ⟨hal-00808124⟩

M Venkatapathi, Gérald Grégori, K Ragheb, Jp Robinson, Ed Hirleman. Measurement and analysis of angle-resolved scatter from small particles in a cylindrical microchannel. Conference on Photon Correlation and Scattering, Aug 2004, Amsterdam (NETHERLANDS), France. pp.2222-2231. ⟨hal-00691264⟩

Pierre Grenot, Gérald Grégori, J.F. Mayol, Didier Grunwald, Christophe Duperray. Les principes de la cytométrie en flux. La Cytométrie en flux (2ème Ed.), 2020. ⟨hal-03147931⟩

Jean-Claude Bertrand, Patricia Bonin, Pierre Caumette, Jean-Pierre Gattuso, Gérald Grégori, et al.. Biogeochemical Cycles. Jean-Claude Bertrand; Pierre Caumette; Philippe Lebaron; Robert Matheron; Philippe Normand; Télesphore Sime-Ngando. Environmental Microbiology: Fundamentals and Applications, Springer Netherlands, pp.511-617, 2015, 978-94-017-9118-2. ⟨10.1007/978-94-017-9118-2_14⟩. ⟨hal-02457918⟩

Jean-Claude Bertrand, Patricia Bonin, Pierre Caumette, Jean-Pierre Gattuso, Gérald Grégori, et al.. Les cycles géochimiques. Chapitre 14. Ecologie Microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, 1004 p., 2011, 2-35311-022-3 9782353110223. ⟨hal-02811238⟩

Gérald Grégori. Analyse de l'ADN et du cycle cellulaire des bactéries marines par cytométrie en flux. Grunwald D., Ronot D., Mayol J.F. Cycle cellulaire et cytométrie en flux, Lavoisier, pp.282, 2010. ⟨hal-00701168⟩

Loïc Charpy, Gérald Grégori, Martine Rodier. Le picoplancton photosynthétique. Muséum National d'Histoire Naturelle. Clipperton : environnement et biodiversité d'un microcosme océanique, IRD Editions, pp.83-88, 2009, Patrimoines naturels 68. ⟨hal-00403900⟩

Solange Duhamel, Gérald Grégori, France van Wambeke, Jiri Nedoma. Detection of extracellular phosphatase activity of heterotrophic prokaryotes at the single cell level by flow cytometry. J. Paul Robinson, Zbigniew Darzynkiewicz, et al. Current Protocols in Cytometry, John Wiley & Sons, Inc., pp.11.18.1-11.18.8., 2009. ⟨hal-00742395⟩

Solange Duhamel, Gérald Grégori, France van Wambeke, Jiri Nedoma. Detection of Extracellular Phosphatase Activity of Heterotrophic Prokaryotes at the Single‐Cell Level by Flow Cytometry. J. Paul Robinson, Zbigniew Darzynkiewicz, et al. Current Protocols in Cytometry, John Wiley & Sons, Inc., pp.49:11.18.1-11.18.8., 2009. ⟨hal-00692148⟩

E. Blatchley, Chao Shen, Z. Naunovic, L. Lin, D. Lyn, et al.. Dyed microspheres for characterization of photochemical reactor behavior.. United States, Patent n° : Patent US 7842512. MIO:10-099. 2010. ⟨hal-00749479⟩

Emmanuel Boss,, Anya M. Waite, Julia Uitz, Silvia G Acinas, Heidi M. Sosik, et al.. Recommendations for plankton measurements on the GO-SHIP program with relevance to other sea-going expeditions. SCOR Working Group 154 GO-SHIP Report, 2020. ⟨hal-02541094⟩

Gérald Grégori. PRE-SWOT Cruise Report. Mesoscale and sub-mesoscale vertical exchanges from multi-platform experiments and supporting modeling simulations: anticipating SWOT launch (CTM2016-78607-P). 2019, ⟨10.20350/digitalCSIC/8584⟩. ⟨hal-02192569⟩

S. Barrillon, Hubert Bataille, Nagib Bhairy, Caroline Comby, Théo Coulon, et al.. FUMSECK cruise report. [Technical Report] MIO-Mediterranean Institute of Oceanography, Aix-Marseille Université. 2020. ⟨hal-03007230⟩

Andrea M. Doglioli, Gérald Grégori, P Marrec, Melilotus Thyssen, Thibaut Wagener, et al.. OSCAHR (Observing Submesoscale Coupling At High Resolution) cruise report. [Research Report] MIO-Mediterranean Institute of Oceanography, Aix-Marseille Université. 2016. ⟨hal-03547139⟩