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Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.
Nicolas Terrapon
,
Olivier Gascuel
,
Eric Marechal
,
Laurent Brehelin
Article dans une revue
hal-00701611v1
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The carbohydrate-active enzyme database: functions and literature
Elodie Drula
,
Marie-Line Garron
,
Suzan Dogan
,
Vincent Lombard
,
Bernard Henrissat
,
et al.
Article dans une revue
hal-03588994v1
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Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides
Lucelia Cabral
,
Gabriela Persinoti
,
Douglas Paixão
,
Marcele Martins
,
Mariana Morais
,
et al.
Article dans une revue
hal-03589026v1
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How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans
Alan Cartmell
,
Elisabeth Lowe
,
Arnaud Basle
,
Susan Firbank
,
Didier Ndeh
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (27), pp.7037-7042. ⟨10.1073/pnas.1704367114⟩
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hal-01802836v1
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Recherche de domaines protéiques divergents à l'aide de modèles de Markov cachés : application à Plasmodium falciparum
Nicolas Terrapon
Bio-informatique [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2010. Français. ⟨NNT : ⟩
Thèse
tel-00811835v1
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Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits
Shicheng Chen
,
Ting Yu
,
Nicolas Terrapon
,
Bernard Henrissat
,
Edward D Walker
Article dans une revue
hal-03279784v1
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EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens
Amel Ghouila
,
Nicolas Terrapon
,
Olivier Gascuel
,
Fatma Guerfali
,
Dhafer Laouini
,
et al.
Article dans une revue
istex
lirmm-00540932v1
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Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies
Zachary Beller
,
Darryl Wesener
,
Timothy Seebeck
,
Janaki Guruge
,
Alexandra Byrne
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (39), pp.e2311422120. ⟨10.1073/pnas.2311422120⟩
Article dans une revue
hal-04472785v1
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The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines
Nicolas Terrapon
,
Vincent Lombard
,
Elodie Drula
,
Pedro Coutinho
,
Bernard Henrissat
Chapitre d'ouvrage
hal-03508817v1
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Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions
Ketty C Tamburrini
,
Nicolas Terrapon
,
Vincent Lombard
,
Bastien Bissaro
,
Sonia Longhi
,
et al.
Article dans une revue
hal-03431539v1
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Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd
,
Daniel Webber
,
Dmitry Rodionov
,
Suzanne Henrissat
,
Robert Chen
,
et al.
Article dans une revue
hal-04472779v1
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A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9
Nicolas Lenfant
,
Matthieu Hainaut
,
Nicolas Terrapon
,
Elodie Drula
,
Vincent Lombard
,
et al.
Article dans une revue
hal-01595066v1
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A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation
Alan Cartmell
,
Li Muñoz-Muñoz
,
Jonathon Briggs
,
Didier Ndeh
,
Elisabeth Lowe
,
et al.
Article dans une revue
hal-02094506v1
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Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis
Jordane Despres
,
Evelyne Forano
,
Pascale Lepercq
,
Sophie Comtet-Marre
,
Grégory Jubelin
,
et al.
Article dans une revue
hal-01439068v1
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Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice
Rebecca Gellman
,
Matthew Olm
,
Nicolas Terrapon
,
Fatima Enam
,
Steven Higginbottom
,
et al.
Article dans une revue
hal-04461077v1
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Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria
Zhi Wang
,
Alexandra S. Tauzin
,
Elisabeth Laville
,
Pietro Tedesco
,
Fabien Letisse
,
et al.
Article dans une revue
hal-02478442v1
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Bacteroidetes use thousands of enzyme combinations to break down glycans
Pascal Lapébie
,
Vincent Lombard
,
Elodie Drula
,
Nicolas Terrapon
,
Bernard Henrissat
Article dans une revue
hal-02588181v1
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PULDB: the expanded database of Polysaccharide Utilization Loci
Nicolas Terrapon
,
Vincent Lombard
,
Elodie Drula
,
Pascal Lapébie
,
Saad Al-Masaudi
,
et al.
Article dans une revue
hal-02094620v1
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Rekha Seshadri
,
Sinead Leahy
,
Graeme Attwood
,
Koon Hoong Teh
,
Suzanne Lambie
,
et al.
Article dans une revue
hal-02094598v1
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Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans
Marcele Martins
,
Mariana Morais
,
Gabriela Persinoti
,
Rafael Galinari
,
Li Yu
,
et al.
Article dans une revue
hal-03982004v1
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Unusual active site location and catalytic apparatus in a glycoside hydrolase family
Jose Munoz-Munoz
,
Alan Cartmell
,
Nicolas Terrapon
,
Bernard Henrissat
,
Harry J. Gilbert
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (19), pp.4936-4941. ⟨10.1073/pnas.1701130114⟩
Article dans une revue
hal-01607615v1
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Fitting Hidden Markov Models of Protein Domains to a Target Species
Nicolas Terrapon
,
Olivier Gascuel
,
Laurent Brehelin
JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jun 2011, Paris, France. pp.193-194
Communication dans un congrès
lirmm-00725501v1
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Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains
Jochen Blom
,
Nicolas Terrapon
,
Shicheng Chen
,
Marty Soehnlen
,
Jochen Blom Id
,
et al.
Article dans une revue
hal-02972534v1
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Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus
Didier Ndeh
,
Arnaud Baslé
,
Henrik Strahl
,
Urszula Mcclurgg
,
Bernard Henrissat
,
et al.
Article dans une revue
hal-03162776v1
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A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Mahesh S. Desai
,
Anna M. Seekatz
,
Nicole M. Koropatkin
,
Nobuhiko Kamada
,
Christina A. Hickey
,
et al.
Article dans une revue
hal-01439105v1
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Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans
Lisanne Hameleers
,
Leena Penttinen
,
Martina Ikonen
,
Léa Jaillot
,
Régis Fauré
,
et al.
Article dans une revue
hal-03270620v1
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Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota
Leidy Lagos
,
Sabina Leanti La Rosa
,
Magnus Ø. Arntzen
,
Ragnhild Ånestad
,
Nicolas Terrapon
,
et al.
Article dans une revue
hal-03162747v1
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Détection de nouveaux domaines protéiques par co-occurence : Application à P. falciparum
Nicolas Terrapon
,
Olivier Gascuel
,
Laurent Brehelin
JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.43-48
Communication dans un congrès
lirmm-00414954v1
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Novel laminarin-binding CBMs in multimodular proteins of marine Bacteroidota feature prominently in phytoplankton blooms
Marie-Katherin Zühlke
,
Elizabeth Ficko-Blean
,
Daniel Bartosik
,
Nicolas Terrapon
,
Alexandra Jeudy
,
et al.
Article dans une revue
hal-04457533v1
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Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans
Michael Patnode
,
Zachary Beller
,
Nathan Han
,
Jiye Cheng
,
Samantha Peters
,
et al.
Article dans une revue
hal-02588032v1
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