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The carbohydrate-active enzyme database: functions and literature

 Elodie Drula , Marie-Line Garron , Suzan Dogan , Vincent Lombard , Bernard Henrissat , et al.
Nucleic Acids Research, 2022, 50 (D1), pp.D571-D577. ⟨10.1093/nar/gkab1045⟩
Article dans une revue hal-03588994v1
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Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

 Nicolas Terrapon , Olivier Gascuel , Eric Marechal , Laurent Brehelin
BMC Bioinformatics, 2012, 13 (1), pp.67. ⟨10.1186/1471-2105-13-67⟩
Article dans une revue hal-00701611v1

Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

 Zachary Beller , Darryl Wesener , Timothy Seebeck , Janaki Guruge , Alexandra Byrne , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (39), pp.e2311422120. ⟨10.1073/pnas.2311422120⟩
Article dans une revue hal-04472785v1

The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines

 Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pedro Coutinho , Bernard Henrissat
A Practical Guide to Using Glycomics Databases, Springer Japan, pp.117-131, 2017, ⟨10.1007/978-4-431-56454-6_6⟩
Chapitre d'ouvrage hal-03508817v1
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Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions

 Ketty C Tamburrini , Nicolas Terrapon , Vincent Lombard , Bastien Bissaro , Sonia Longhi , et al.
Biomolecules, 2021, 11 (11), pp.1632. ⟨10.3390/biom11111632⟩
Article dans une revue hal-03431539v1

Bioactive glycans in a microbiome-directed food for children with malnutrition

 Matthew Hibberd , Daniel Webber , Dmitry Rodionov , Suzanne Henrissat , Robert Chen , et al.
Nature, 2023, 625 (7993), pp.157-165. ⟨10.1038/s41586-023-06838-3⟩
Article dans une revue hal-04472779v1

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

 Nicolas Lenfant , Matthieu Hainaut , Nicolas Terrapon , Elodie Drula , Vincent Lombard , et al.
Carbohydrate Research, 2017, 448, pp.166-174. ⟨10.1016/j.carres.2017.04.012⟩
Article dans une revue hal-01595066v1
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A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation

 Alan Cartmell , Li Muñoz-Muñoz , Jonathon Briggs , Didier Ndeh , Elisabeth Lowe , et al.
Nature Microbiology, 2018, 3 (11), pp.1314-1326. ⟨10.1038/s41564-018-0258-8⟩
Article dans une revue hal-02094506v1
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Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

 Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Grégory Jubelin , et al.
BMC Genomics, 2016, 27 (17), ⟨10.1186/s12864-016-2758-3⟩
Article dans une revue hal-01439068v1
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Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice

 Rebecca Gellman , Matthew Olm , Nicolas Terrapon , Fatima Enam , Steven Higginbottom , et al.
Cell Reports, 2023, 42 (11), pp.113233. ⟨10.1016/j.celrep.2023.113233⟩
Article dans une revue hal-04461077v1
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Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

 Zhi Wang , Alexandra S. Tauzin , Elisabeth Laville , Pietro Tedesco , Fabien Letisse , et al.
mSphere, 2020, 5 (1), 26 p. ⟨10.1128/mSphere.00771-19⟩
Article dans une revue hal-02478442v1
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Bacteroidetes use thousands of enzyme combinations to break down glycans

 Pascal Lapébie , Vincent Lombard , Elodie Drula , Nicolas Terrapon , Bernard Henrissat
Nature Communications, 2019, 10 (2043), pp.1. ⟨10.1038/s41467-019-10068-5⟩
Article dans une revue hal-02588181v1
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How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

 Alan Cartmell , Elisabeth Lowe , Arnaud Basle , Susan Firbank , Didier Ndeh , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (27), pp.7037-7042. ⟨10.1073/pnas.1704367114⟩
Article dans une revue hal-01802836v1
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Recherche de domaines protéiques divergents à l'aide de modèles de Markov cachés : application à Plasmodium falciparum

 Nicolas Terrapon
Bio-informatique [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2010. Français. ⟨NNT : ⟩
Thèse tel-00811835v1
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Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits

 Shicheng Chen , Ting Yu , Nicolas Terrapon , Bernard Henrissat , Edward D Walker
Genes, 2021, 12 (5), pp.752. ⟨10.3390/genes12050752⟩
Article dans une revue hal-03279784v1
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Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides

 Lucelia Cabral , Gabriela Persinoti , Douglas Paixão , Marcele Martins , Mariana Morais , et al.
Nature Communications, 2022, 13 (1), pp.629. ⟨10.1038/s41467-022-28310-y⟩
Article dans une revue hal-03589026v1
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EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens

 Amel Ghouila , Nicolas Terrapon , Olivier Gascuel , Fatma Guerfali , Dhafer Laouini , et al.
Infection, Genetics and Evolution, 2011, 11 (4), pp.698-707. ⟨10.1016/j.meegid.2010.09.008⟩
Article dans une revue istex lirmm-00540932v1
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Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans

 Lisanne Hameleers , Leena Penttinen , Martina Ikonen , Léa Jaillot , Régis Fauré , et al.
Biotechnology for Biofuels, 2021, 14 (1), ⟨10.1186/s13068-021-01976-0⟩
Article dans une revue hal-03270620v1
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Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans

 Michael Patnode , Zachary Beller , Nathan Han , Jiye Cheng , Samantha Peters , et al.
Cell, 2019, 179 (1), pp.59-73.e13. ⟨10.1016/j.cell.2019.08.011⟩
Article dans une revue hal-02588032v1
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Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota

 Leidy Lagos , Sabina Leanti La Rosa , Magnus Ø. Arntzen , Ragnhild Ånestad , Nicolas Terrapon , et al.
Microorganisms, 2020, 8 (7), pp.983. ⟨10.3390/microorganisms8070983⟩
Article dans une revue hal-03162747v1
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Détection de nouveaux domaines protéiques par co-occurence : Application à P. falciparum

 Nicolas Terrapon , Olivier Gascuel , Laurent Brehelin
JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.43-48
Communication dans un congrès lirmm-00414954v1

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

 Junhua Li , Huanzi Zhong , Yuliaxis Ramayo-Caldas , Nicolas Terrapon , Vincent Lombard , et al.
GigaScience, 2020, 9 (6), ⟨10.1093/gigascience/giaa057⟩
Article dans une revue hal-04396765v1

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

 Olov Svartström , Johannes Alneberg , Nicolas Terrapon , Vincent Lombard , Ino de Bruijn , et al.
The International Society of Microbiologial Ecology Journal, 2017, 11 (11), pp.2538-2551. ⟨10.1038/ismej.2017.108⟩
Article dans une revue hal-02328246v1
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Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

 Mabel Wong , Weijun Wang , Marie Couturier , Fakhria Razeq , Vincent Lombard , et al.
Frontiers in Microbiology, 2017, 8, pp.2504. ⟨10.3389/fmicb.2017.02504⟩
Article dans une revue hal-01802956v1
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A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)

 Alexander Holm Viborg , Nicolas Terrapon , Vincent Lombard , Gurvan Michel , Mirjam Czjzek , et al.
Journal of Biological Chemistry, In press, 294 (44), pp.15973 - 15986. ⟨10.1074/jbc.RA119.010619⟩
Article dans une revue hal-02291008v2

Novel laminarin-binding CBMs in multimodular proteins of marine Bacteroidota feature prominently in phytoplankton blooms

 Marie-Katherin Zühlke , Elizabeth Ficko-Blean , Daniel Bartosik , Nicolas Terrapon , Alexandra Jeudy , et al.
BioRxiv, 2023, ⟨10.1101/2023.09.07.556657⟩
Article dans une revue hal-04457533v1
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PULDB: the expanded database of Polysaccharide Utilization Loci

 Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pascal Lapébie , Saad Al-Masaudi , et al.
Nucleic Acids Research, 2018, 46 (D1), pp.D677-D683. ⟨10.1093/nar/gkx1022⟩
Article dans une revue hal-02094620v1
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

 Rekha Seshadri , Sinead Leahy , Graeme Attwood , Koon Hoong Teh , Suzanne Lambie , et al.
Nature Biotechnology, 2018, 36 (4), pp.359-367. ⟨10.1038/nbt.4110⟩
Article dans une revue hal-02094598v1

Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans

 Marcele Martins , Mariana Morais , Gabriela Persinoti , Rafael Galinari , Li Yu , et al.
Acta crystallographica Section D : Structural biology [1993-..], 2022, 78 (11), pp.1358-1372. ⟨10.1107/S2059798322009561⟩
Article dans une revue hal-03982004v1
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Unusual active site location and catalytic apparatus in a glycoside hydrolase family

 Jose Munoz-Munoz , Alan Cartmell , Nicolas Terrapon , Bernard Henrissat , Harry J. Gilbert
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (19), pp.4936-4941. ⟨10.1073/pnas.1701130114⟩
Article dans une revue hal-01607615v1
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