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Gaël Varoquaux

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Metrics reloaded: recommendations for image analysis validation

Lena Maier-Hein , Annika Reinke , Patrick Godau , Minu Tizabi , Florian Buettner
Nature Methods, 2024, 21 (2), pp.195-212. ⟨10.1038/s41592-023-02151-z⟩
Article dans une revue hal-04477840v1
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Causal inference methods for combining randomized trials and observational studies: a review

Bénédicte Colnet , Imke Mayer , Guanhua Chen , Awa Dieng , Ruohong Li
Statistical Science, In press
Article dans une revue hal-03008276v2

Understanding metric-related pitfalls in image analysis validation

Annika Reinke , Minu D. Tizabi , Michael Baumgartner , Matthias Eisenmann , Doreen Heckmann-Nötzel
Nature Methods, 2024, 21, pp.182-194. ⟨10.1038/s41592-023-02150-0⟩
Article dans une revue hal-04480158v1
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The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Russell Poldrack , Christopher Markiewicz , Stefan Appelhoff , Yoni Ashar , Tibor Auer
Imaging Neuroscience, 2024, pp.1-34. ⟨10.1162/imag_a_00103⟩
Article dans une revue hal-04346097v1
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Relational Data Embeddings for Feature Enrichment with Background Information

Alexis Cvetkov-Iliev , Alexandre Allauzen , Gaël Varoquaux
Machine Learning, 2023, 112 (2), pp.687-720. ⟨10.1007/s10994-022-06277-7⟩
Article dans une revue hal-03848124v1
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How to remove or control confounds in predictive models, with applications to brain biomarkers

Darya Chyzhyk , Gaël Varoquaux , Michael Milham , Bertrand Thirion
GigaScience, 2022, 11, ⟨10.1093/gigascience/giac014⟩
Article dans une revue hal-03607651v1

Understanding Brain Network Dynamics in Autism Begs for Generalization

Yong Liu , Gaël Varoquaux
Biological Psychiatry, 2022, 91 (11), pp.916-917. ⟨10.1016/j.biopsych.2022.03.007⟩
Article dans une revue hal-03818457v1
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Analytics on Non-Normalized Data Sources: more Learning, rather than more Cleaning

Alexis Cvetkov-Iliev , Alexandre Allauzen , Gaël Varoquaux
IEEE Access, In press, 10, pp.42420-42431. ⟨10.1109/ACCESS.2022.3168013⟩
Article dans une revue hal-03647434v2

Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging

Bruno Hebling Vieira , Franziskus Liem , Kamalaker Dadi , Denis Engemann , Alexandre Gramfort
Neurobiology of Aging, 2022, 118, pp.55-65. ⟨10.1016/j.neurobiolaging.2022.06.008⟩
Article dans une revue hal-03808175v1

Machine learning for medical imaging: methodological failures and recommendations for the future

Gaël Varoquaux , Veronika Cheplygina
npj Digital Medicine, 2022, 5 (1), pp.48. ⟨10.1038/s41746-022-00592-y⟩
Article dans une revue hal-03818456v1
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Benchmarking missing-values approaches for predictive models on health databases

Alexandre Perez-Lebel , Gaël Varoquaux , Marine Le Morvan , Julie Josse , Jean-Baptiste Poline
GigaScience, In press, ⟨10.1093/gigascience/giac013⟩
Article dans une revue hal-03526292v2
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Comprehensive decoding mental processes from Web repositories of functional brain images

Romuald Menuet , Raphael Meudec , Jérôme Dockès , Gaël Varoquaux , Bertrand Thirion
Scientific Reports, 2022, 12 (7050), ⟨10.1038/s41598-022-10710-1⟩
Article dans une revue hal-03666470v1

Advancing brain network models to reconcile functional neuroimaging and clinical research

Xenia Kobeleva , Gaël Varoquaux , Alain Dagher , Mohit Adhikari , Christian Grefkes
Neuroimage-Clinical, 2022, 36, pp.103262. ⟨10.1016/j.nicl.2022.103262⟩
Article dans une revue hal-04100892v1

424-P: Body-Weight Variability and Risk of Cardiovascular Outcomes in Type 1 Diabetes: Results from the DCCT/EDIC Studies

Iulia Petria , Samuel Albuquerque , Gaël Varoquaux , Jill-Jênn Vie , Gilberto Velho
Diabetes, 2022, 71 (Supplement_1), ⟨10.2337/db22-424-P⟩
Article dans une revue hal-03818459v1
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Body-weight variability and risk of cardiovascular outcomes in patients with type 1 diabetes: a retrospective observational analysis of data from the DCCT/EDIC population.

Iulia Petria , Samuel Albuquerque , Gaël Varoquaux , Jill-Jênn Vie , Nicolas Venteclef
Cardiovascular Diabetology, 2022, 21 (1), pp.247. ⟨10.1186/s12933-022-01689-0⟩
Article dans une revue hal-04021480v1
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Insights from an autism imaging biomarker challenge: promises and threats to biomarker discovery

Nicolas Traut , Katja Heuer , Guillaume Lemaître , Anita Beggiato , David Germanaud
NeuroImage, 2022, 255, pp.119171. ⟨10.1016/j.neuroimage.2022.119171⟩
Article dans une revue hal-03637273v2
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Causal effect on a target population: a sensitivity analysis to handle missing covariates

Bénédicte Colnet , Julie Josse , Gaël Varoquaux , Erwan Scornet
Journal of Causal Inference, 2022, 10 (1), pp.372-414. ⟨10.1515/jci-2021-0059⟩
Article dans une revue hal-03473691v3
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Extracting representations of cognition across neuroimaging studies improves brain decoding

Arthur Mensch , Julien Mairal , Bertrand Thirion , Gaël Varoquaux
PLoS Computational Biology, 2021, 17 (5), pp.e1008795:1-20. ⟨10.1371/journal.pcbi.1008795⟩
Article dans une revue hal-01874713v3
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Preventing dataset shift from breaking machine-learning biomarkers

Jérôme Dockès , Gaël Varoquaux , Jean-Baptiste Poline
GigaScience, inPress, ⟨10.1093/gigascience/giab055⟩
Article dans une revue hal-03293375v1
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Decoding with Confidence: Statistical Control on Decoder Maps

Jérôme-Alexis Chevalier , Tuan-Binh Nguyen , Joseph Salmon , Gaël Varoquaux , Bertrand Thirion
NeuroImage, 2021, pp.117921. ⟨10.1016/j.neuroimage.2021.117921⟩
Article dans une revue hal-03179728v1
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Population modeling with machine learning can enhance measures of mental health

Kamalaker Dadi , Gaël Varoquaux , Josselin Houenou , Danilo Bzdok , Bertrand Thirion
Article dans une revue hal-03470466v1
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Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks

Gregory Kiar , Yohan Chatelain , Pablo de Oliveira Castro , Eric Petit , Ariel Rokem
PLoS ONE, 2021, 16 (11), pp.e0250755. ⟨10.1371/journal.pone.0250755⟩
Article dans une revue hal-03651395v1
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Fine-grain atlases of functional modes for fMRI analysis

Kamalaker Dadi , Gaël Varoquaux , Antonia Machlouzarides-Shalit , Krzysztof J. Gorgolewski , Demian Wassermann
NeuroImage, 2020, 221, pp.117126
Article dans une revue hal-02904869v1
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Individual Brain Charting dataset extension, second release of high-resolution fMRI data for cognitive mapping

Ana Luísa Pinho , Alexis Amadon , Baptiste Gauthier , Nicolas Clairis , André Knops
Scientific Data , 2020, ⟨10.1038/s41597-020-00670-4⟩
Article dans une revue hal-02973046v1
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International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium

Gabriel A. Brat , Griffin M. Weber , Nils Gehlenborg , Paul Avillach , Nathan P. Palmer
npj Digital Medicine, 2020, 3 (1), pp.#109. ⟨10.1038/s41746-020-00308-0⟩
Article dans une revue hal-02918344v1
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NeuroQuery, comprehensive meta-analysis of human brain mapping

Jérôme Dockès , Russell Poldrack , Romain Primet , Hande Gözükan , Tal Yarkoni
eLife, 2020
Article dans une revue hal-02485642v2
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Predictive regression modeling with MEG/EEG: from source power to signals and cognitive states

David Sabbagh , Pierre Ablin , Gaël Varoquaux , Alexandre Gramfort , Denis Engemann
Article dans une revue hal-02367411v1
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Encoding high-cardinality string categorical variables

Patricio Cerda , Gaël Varoquaux
IEEE Transactions on Knowledge and Data Engineering, inPress, ⟨10.1109/TKDE.2020.2992529⟩
Article dans une revue hal-02171256v5
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Subject‐specific segregation of functional territories based on deep phenotyping

Ana Luísa Pinho , Alexis Amadon , Murielle Fabre , Elvis Dohmatob , Isabelle Denghien
Human Brain Mapping, 2020, ⟨10.1002/hbm.25189⟩
Article dans une revue hal-03088606v1

Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkers

Denis ​ Engemann , Oleh Kozynets , David Sabbagh , Guillaume Lemaître , Gaël Varoquaux
Article dans une revue hal-02395406v1
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Benchmarking functional connectome-based predictive models for resting-state fMRI

Kamalaker Dadi , Mehdi Rahim , Alexandre Abraham , Darya Chyzhyk , Michael Milham
NeuroImage, 2019, 192, pp.115-134. ⟨10.1016/j.neuroimage.2019.02.062⟩
Article dans une revue hal-01824205v3
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Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation

Mehdi Rahim , Bertrand Thirion , Gaël Varoquaux
Medical Image Analysis, 2019, ⟨10.1016/j.media.2019.03.001⟩
Article dans une revue hal-02068389v1
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Predictive models avoid excessive reductionism in cognitive neuroimaging

Gaël Varoquaux , Russell Poldrack
Current Opinion in Neurobiology, inPress, 55, ⟨10.1016/j.conb.2018.11.002⟩
Article dans une revue hal-01856412v4
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Brain-based ranking of cognitive domains to predict schizophrenia

Teresa M Karrer , Danielle S. Bassett , Birgit Derntl , Oliver Gruber , Andre Aleman
Human Brain Mapping, 2019, 40, pp.4487-4507. ⟨10.1002/hbm.24716⟩
Article dans une revue hal-02180311v1
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Patterns of Schizophrenia Symptoms: Hidden Structure in the PANSS Questionnaire

Jeremy Lefort-Besnard , Gaël Varoquaux , Birgit Derntl , Oliver Gruber , Andre Aleman
Translational Psychiatry, inPress, ⟨10.1038/s41398-018-0294-4⟩
Article dans une revue hal-01888918v1
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Similarity encoding for learning with dirty categorical variables

Patricio Cerda , Gaël Varoquaux , Balázs Kégl
Machine Learning, 2018, ⟨10.1007/s10994-018-5724-2⟩
Article dans une revue hal-01806175v1
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Different shades of default mode disturbance in schizophrenia: Subnodal covariance estimation in structure and function

Jeremy Lefort-Besnard , Danielle S Bassett , Jonathan Smallwood , Daniel S. Margulies , Birgit Derntl
Human Brain Mapping, 2018, pp.1-52
Article dans une revue hal-01620441v1
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Inter-subject registration of functional images: do we need anatomical images ?

Elvis Dohmatob , Gaël Varoquaux , Bertrand Thirion
Frontiers in Neuroscience, inPress
Article dans une revue hal-01701619v1
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Shared Endo-phenotypes of Default Mode Dysfunction in Attention Deficit/Hyperactivity Disorder and Autism Spectrum Disorder

Julius M Kernbach , Theodore D Satterthwaite , Danielle S. Bassett , Jonathan Smallwood , Daniel Margulies
Translational Psychiatry, 2018, 8 (1), pp.133. ⟨10.1038/s41398-018-0179-6⟩
Article dans une revue hal-01790245v1
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Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants

Julius M Kernbach , B T Thomas Yeo , Jonathan Smallwood , Daniel Margulies , Michel Thiebaut de Schotten
Proceedings of the National Academy of Sciences of the United States of America, 2018, ⟨10.1073/pnas.1804876115⟩
Article dans une revue hal-01926796v1
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Stochastic Subsampling for Factorizing Huge Matrices

Arthur Mensch , Julien Mairal , Bertrand Thirion , Gaël Varoquaux
IEEE Transactions on Signal Processing, 2018, 66 (1), pp.113-128. ⟨10.1109/TSP.2017.2752697⟩
Article dans une revue hal-01431618v3
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Atlases of cognition with large-scale brain mapping

Gaël Varoquaux , Yannick Schwartz , Russell Poldrack , Baptiste Gauthier , Danilo Bzdok
PLoS Computational Biology, inPress
Article dans une revue hal-01908189v1
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Atlases of cognition with large-scale human brain mapping

Gaël Varoquaux , Yannick Schwartz , Russell A Poldrack , Baptiste Gauthier , Danilo Bzdok
PLoS Computational Biology, 2018, 14 (11), pp.e1006565. ⟨10.1371/journal.pcbi.1006565⟩
Article dans une revue inserm-02146700v1
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Decoding fMRI activity in the time domain improves classification performance

João Loula , Gaël Varoquaux , Bertrand Thirion
Article dans une revue hal-01576641v1
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Joint prediction of multiple scores captures better individual traits from brain images

Mehdi Rahim , Bertrand Thirion , Danilo Bzdok , Irène Buvat , Gaël Varoquaux
Article dans une revue hal-01547524v1
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FReM – scalable and stable decoding with fast regularized ensemble of models

Andrés A Hoyos-Idrobo , Gaël Varoquaux , Yannick Schwartz , Bertrand Thirion
NeuroImage, 2017, pp.1-16. ⟨10.1016/j.neuroimage.2017.10.005⟩
Article dans une revue hal-01615015v1
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Distinct alterations in Parkinson's Medication-state and Disease-state Connectivity Running Title: PD altered connectivity

Bernard Ng , Gaël Varoquaux , Jean Baptiste Poline , Bertrand Thirion , Michael D. Greicius
Neuroimage-Clinical, 2017
Article dans une revue hal-01614971v1
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Cross-validation failure: small sample sizes lead to large error bars

Gaël Varoquaux
Article dans une revue hal-01545002v1

Predicting brain-age from multimodal imaging data captures cognitive impairment

Franziskus Liem , Gaël Varoquaux , Jana Kynast , Frauke Beyer , Shahrzad Kharabian Masouleh
Article dans une revue hal-01403005v1
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Formal Models of the Network Co-occurrence Underlying Mental Operations

Danilo Bzdok , Gaël Varoquaux , Olivier Grisel , Michael Eickenberg , Cyril Poupon
PLoS Computational Biology, 2016, ⟨10.1371/journal.pcbi.1004994⟩
Article dans une revue hal-01338307v1
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Seeing it all: Convolutional network layers map the function of the human visual system

Michael Eickenberg , Alexandre Gramfort , Gaël Varoquaux , Bertrand Thirion
Article dans une revue hal-01389809v1
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Assessing and tuning brain decoders: cross-validation, caveats, and guidelines

Gaël Varoquaux , Pradeep A Reddy Raamana , Denis A Engemann , Andrés A Hoyos-Idrobo , Yannick A Schwartz
Article dans une revue hal-01332785v2
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Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-sample Generalization

Danilo Bzdok , Gaël Varoquaux , Bertrand Thirion
Educational and Psychological Measurement, 2016
Article dans une revue hal-01338313v1
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The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

Krzysztof J. Gorgolewski , Tibor Auer , Vince D. Calhoun , Cameron R. Craddock , Samir Das
Scientific Data , 2016, 3, pp.160044. ⟨10.1038/sdata.2016.44⟩
Article dans une revue inserm-01345616v1
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Recursive nearest agglomeration (ReNA): fast clustering for approximation of structured signals

Andrés Hoyos-Idrobo , Gaël Varoquaux , Jonas Kahn , Bertrand Thirion
IEEE Transactions on Pattern Analysis and Machine Intelligence, In press, XX, ⟨10.1109/TPAMI.2018.2815524⟩
Article dans une revue hal-01366651v2
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Beyond computational reproducibility, let us aim for reusability

Gaël Varoquaux
IEEE CIS Newsletter on Cognitive and Developmental Systems, 2016, What is Computational Reproducibility?, 13 (2)
Article dans une revue hal-01592368v1
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Connectivity-Based Parcellation: Critique and Implications

Simon B. Eickhoff , Bertrand Thirion , Gaël Varoquaux , Danilo Bzdok
Human Brain Mapping, 2016, pp.22. ⟨10.1002/hbm.22933⟩
Article dans une revue hal-01184563v1

Exploring the anatomical encoding of voice with a mathematical model of the vocal system.

M Florencia Assaneo , Jacobo Sitt , Gaël Varoquaux , Mariano Sigman , Laurent Cohen
NeuroImage, 2016, 141, pp.31-9. ⟨10.1016/j.neuroimage.2016.07.033⟩
Article dans une revue hal-01498364v1
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Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example

Alexandre Abraham , Michael Milham , Adriana Di Martino , R. Cameron Craddock , Dimitris Samaras
Article dans une revue hal-01398867v1
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Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction

Mehdi Rahim , Bertrand Thirion , Claude Comtat , Gaël Varoquaux
IEEE Journal of Selected Topics in Signal Processing, 2016, 10 (7), pp.1204 - 1213. ⟨10.1109/JSTSP.2016.2600400⟩
Article dans une revue hal-01353728v1
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Convex relaxations of penalties for sparse correlated variables with bounded total variation

Eugene Belilovsky , Andreas Argyriou , Gaël Varoquaux , Matthew B. Blaschko
Machine Learning, 2015, pp.1-21. ⟨10.1007/s10994-015-5511-2⟩
Article dans une revue hal-01167861v1
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NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain

Krzysztof J. Gorgolewski , Gael Varoquaux , Gabriel Rivera , Yannick Schwartz , Vanessa V. Sochat
NeuroImage, 2015, 124 (Pt B), pp.1242-1244. ⟨10.1016/j.neuroimage.2015.04.016⟩
Article dans une revue inserm-01148969v1
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NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

Krzysztof J. Gorgolewski , Gael Varoquaux , Gabriel Rivera , Yannick Schwarz , Satrajit S. Ghosh
Frontiers in Neuroinformatics, 2015, 9 (8), ⟨10.3389/fninf.2015.00008⟩
Article dans une revue inserm-01134573v2
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Transport on Riemannian Manifold for Connectivity-based Brain Decoding

Bernard Ng , Gaël Varoquaux , Jean-Baptiste Poline , Michael D Greicius , Bertrand Thirion
IEEE Transactions on Medical Imaging, 2015, PP (99), pp.9. ⟨10.1109/TMI.2015.2463723⟩
Article dans une revue hal-01185200v1
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Machine Learning Patterns for Neuroimaging-Genetic Studies in the Cloud

Benoit da Mota , Radu Tudoran , Alexandru Costan , Gaël Varoquaux , Goetz Brasche
Frontiers in Neuroinformatics, 2014, Recent advances and the future generation of neuroinformatics infrastructure, 8, ⟨10.3389/fninf.2014.00031⟩
Article dans une revue hal-01057325v1

Identification of Mood-Relevant Brain Connections Using a Continuous, Subject-Driven Rumination Paradigm.

Anna-Clare Milazzo , Bernard Ng , Heidi Jiang , William Shirer , Gael Varoquaux
Cerebral Cortex, 2014, pp.12
Article dans une revue hal-01094759v1
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Which fMRI clustering gives good brain parcellations?

Bertrand Thirion , Gaël Varoquaux , Elvis Dohmatob , Jean-Baptiste Poline
Frontiers in Neuroscience, 2014, 8 (167), pp.13. ⟨10.3389/fnins.2014.00167⟩
Article dans une revue hal-01015172v1
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How machine learning is shaping cognitive neuroimaging

Gaël Varoquaux , Bertrand Thirion
GigaScience, 2014, 3, pp.28. ⟨10.1186/2047-217X-3-28⟩
Article dans une revue hal-01094737v1
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Machine Learning for Neuroimaging with Scikit-Learn

Alexandre Abraham , Fabian Pedregosa , Michael Eickenberg , Philippe Gervais , Andreas Muller
Frontiers in Neuroscience, 2013, pp.15. ⟨10.3389/fninf.2014.00014⟩
Article dans une revue hal-01093971v1

Spatial vs. Temporal Features in ICA of Resting-State fMRI - A Quantitative and Qualitative Investigation in the Context of Response Inhibition

Lixia Tian , Yazhuo Kong , Juejing Ren , Gaël Varoquaux , Yufeng Zang
Article dans une revue hal-00856513v1
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Learning and comparing functional connectomes across subjects

Gaël Varoquaux , R. Cameron Craddock
NeuroImage, 2013, 80, pp.405-415. ⟨10.1016/j.neuroimage.2013.04.007⟩
Article dans une revue hal-00812911v1
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A framework for inter-subject prediction of functional connectivity from structural networks

Fani Deligianni , Gaël Varoquaux , Bertrand Thirion , David J. Sharp , Christian Ledig
IEEE Transactions on Medical Imaging, 2013, epub ahead of print, ⟨10.1109/TMI.2013.2276916⟩
Article dans une revue hal-00852072v1
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Randomized parcellation based inference.

Benoit da Mota , Virgile Fritsch , Gaël Varoquaux , Tobias Banaschewski , Gareth J. Barker
NeuroImage, 2013, epub ahead of print. ⟨10.1016/j.neuroimage.2013.11.012⟩
Article dans une revue hal-00915243v1
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Publishing scientific software matters

Christophe Pradal , Gaël Varoquaux , Hans Peter Langtangen
Journal of computational science, 2013, 4 (5), pp.311 - 312. ⟨10.1016/j.jocs.2013.08.001⟩
Article dans une revue hal-00858663v1

In Situ Synchrotron Microtomography Reveals Multiple Reaction Pathways During Soda-Lime Glass Synthesis

Emmanuelle Gouillart , Michael-J. Toplis , Julien Grynberg , Marie-Hélène Chopinet , Elin Sondergard
Journal of the American Ceramic Society, 2012, 95 (5), pp.1504-1507. ⟨10.1111/j.1551-2916.2012.05151.x⟩
Article dans une revue hal-00705955v1
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Hyperfrontality and hypoconnectivity during refreshing in schizophrenia.

Marie-Laure Grillon , Catherine Oppenheim , Gaël Varoquaux , Frédérique Charbonneau , Anne-Dominique Devauchelle
Psychiatry Research: Neuroimaging, 2012, 211 (3), pp.226-233. ⟨10.1016/j.pscychresns.2012.09.001⟩
Article dans une revue hal-00753225v1
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Scale-Free and Multifractal Time Dynamics of fMRI Signals during Rest and Task.

Philippe Ciuciu , G. Varoquaux , Patrice Abry , S. Sadaghiani , A. Kleinschmidt
Frontiers in Physiology, 2012, 3 (1), pp.186. ⟨10.3389/fphys.2012.00186⟩
Article dans une revue hal-00852175v1
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Detecting Outliers in High-Dimensional Neuroimaging Datasets with Robust Covariance Estimators

Virgile Fritsch , Gaël Varoquaux , Benjamin Thyreau , Jean-Baptiste Poline , Bertrand Thirion
Medical Image Analysis, 2012, 16, pp.1359-1370. ⟨10.1016/j.media.2012.05.002⟩
Article dans une revue hal-00701225v1
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Markov models for fMRI correlation structure: is brain functional connectivity small world, or decomposable into networks?

Gaël Varoquaux , Alexandre Gramfort , Jean Baptiste Poline , Bertrand Thirion
Journal of Physiology - Paris, 2012, 106, pp.212-221. ⟨10.1016/j.jphysparis.2012.01.001⟩
Article dans une revue hal-00665340v2

Changing computational research. The challenges ahead.

Cameron Neylon , Jan Aerts , C Titus Brown , Simon J Coles , Les Hatton
Source Code for Biology and Medicine, 2012, 7 (2), pp.2. ⟨10.1186/1751-0473-7-2⟩
Article dans une revue hal-00856484v1
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PyXNAT: XNAT in Python

Yannick Schwartz , Alexis Barbot , Benjamin Thyreau , Vincent Frouin , Gaël Varoquaux
Frontiers in Neuroinformatics, 2012, 6 (12), pp.1-14. ⟨10.3389/fninf.2012.00012⟩
Article dans une revue hal-00782339v1
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Total variation regularization for fMRI-based prediction of behaviour.

Vincent Michel , Alexandre Gramfort , Gaël Varoquaux , Evelyn Eger , Bertrand Thirion
IEEE Transactions on Medical Imaging, 2011, 30 (7), pp.1328 - 1340. ⟨10.1109/TMI.2011.2113378⟩
Article dans une revue inria-00563468v1
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Scikit-learn: Machine Learning in Python

Fabian Pedregosa , Gaël Varoquaux , Alexandre Gramfort , Vincent Michel , Bertrand Thirion
Journal of Machine Learning Research, 2011
Article dans une revue hal-00650905v2
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A supervised clustering approach for fMRI-based inference of brain states

Vincent Michel , Alexandre Gramfort , Gaël Varoquaux , Evelyn Eger , Christine Keribin
Pattern Recognition, 2011, epub ahead of print. ⟨10.1016/j.patcog.2011.04.006⟩
Article dans une revue inria-00589201v1
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The NumPy array: a structure for efficient numerical computation

Stefan van Der Walt , S. Chris Colbert , Gaël Varoquaux
Computing in Science and Engineering, 2011, 13 (2), pp.22-30. ⟨10.1109/MCSE.2011.37⟩
Article dans une revue inria-00564007v1
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Mayavi: 3D visualization of scientific data

Prabhu Ramachandran , Gaël Varoquaux
Computing in Science and Engineering, 2011, 13 (2), pp.40-51. ⟨10.1109/MCSE.2011.35⟩
Article dans une revue inria-00528985v1
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A group model for stable multi-subject ICA on fMRI datasets.

Gaël Varoquaux , Sepideh Sadaghiani , Philippe Pinel , Andreas Kleinschmidt , Jean-Baptiste Poline
NeuroImage, 2010, 51 (1), pp.288-99. ⟨10.1016/j.neuroimage.2010.02.010⟩
Article dans une revue hal-00489507v1
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Python comme langage scientifique

Gaël Varoquaux
Linux Magazine France, 2009, Explorer les richesses du langage Python, 40
Article dans une revue hal-00776672v1
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Light-pulse atom interferometry in microgravity

Guillaume Stern , Baptiste Battelier , Rémi Geiger , Gaël Varoquaux , André Villing
The European Physical Journal D : Atomic, molecular, optical and plasma physics, 2009, 53 (3), pp.353. ⟨10.1140/epjd/e2009-00150-5⟩
Article dans une revue hal-00369287v1
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How to estimate the differential acceleration in a two-species atom interferometer to test the equivalence principle

Gaël Varoquaux , Robert Nyman , Rémi Geiger , Patrick Cheinet , Arnaud Landragin
New Journal of Physics, 2009, 11, pp.113010. ⟨10.1088/1367-2630/11/11/113010⟩
Article dans une revue hal-00423845v1
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Sagnac effect in superfluid liquids

Eric Varoquaux , Gaël Varoquaux
Uspekhi Fizicheskikh Nauk, 2008, 51 (2), pp.205-208. ⟨10.1070/PU2008v051n02ABEH006425⟩
Article dans une revue hal-00502604v1
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Light-shift tomography in an optical-dipole trap for neutral atoms

Jean-Philippe Brantut , Jean-François Clément , Martin Robert-De-Saint-Vincent , Gaël Varoquaux , Robert Nyman
Physical Review A : Atomic, molecular, and optical physics [1990-2015], 2008, 78, pp.031401 (R). ⟨10.1103/PhysRevA.78.031401⟩
Article dans une revue hal-00303321v1
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Agile Computer Control of a Complex Experiment

Gaël Varoquaux
Computing in Science and Engineering, 2008, 10 (2), pp.55-59. ⟨10.1109/MCSE.2008.47⟩
Article dans une revue hal-00502504v1
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I.C.E.: a Transportable Atomic Inertial Sensor for Test in Microgravity

Robert Nyman , Gaël Varoquaux , Fabien Lienhart , Damien Chambon , Salah Boussen
Applied Physics B - Laser and Optics, 2006, 84, pp.673-681. ⟨10.1007/s00340-006-2395-7⟩
Article dans une revue hal-00023609v1
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Tapered-amplified AR-coated laser diodes for Potassium and Rubidium atomic-physics experiments

Robert Nyman , Gaël Varoquaux , Brice Villier , Delphine Sacchet , Frédéric Moron
Review of Scientific Instruments, 2006, 77, pp.033105. ⟨10.1063/1.2186809⟩
Article dans une revue hal-00014931v1
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Learning High-Quality and General-Purpose Phrase Representations

Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek
EACL 2024 - The 18th Conference of the European Chapter of the Association for Computational Linguistics, Mar 2024, La Valette, Malta
Communication dans un congrès hal-04465022v1
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Beyond calibration: estimating the grouping loss of modern neural networks

Alexandre Perez-Lebel , Marine Le Morvan , Gaël Varoquaux
ICLR 2023 – The Eleventh International Conference on Learning Representations, May 2023, Kigali, Rwanda
Communication dans un congrès hal-03829870v4
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The Locality and Symmetry of Positional Encodings

Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek
EMNLP 2023 - Conference on Empirical Methods in Natural Language Processing, Dec 2023, Singapore, Singapore
Communication dans un congrès hal-04330367v1
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GLADIS: A General and Large Acronym Disambiguation Benchmark

Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek
EACL 2023 - The 17th Conference of the European Chapter of the Association for Computational Linguistics, May 2023, Dubrovnik, Croatia
Communication dans un congrès hal-04039173v1
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Imputing out-of-vocabulary embeddings with LOVE makes language models robust with little cost

Lihu Chen , Gaël Varoquaux , Fabian Suchanek
ACL 2022 - 60th Annual Meeting of the Association for Computational Linguistics, May 2022, Dublin, Ireland
Communication dans un congrès hal-03613101v2
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Why do tree-based models still outperform deep learning on typical tabular data?

Léo Grinsztajn , Edouard Oyallon , Gaël Varoquaux
36th Conference on Neural Information Processing Systems (NeurIPS 2022) Track on Datasets and Benchmarks, Nov 2022, New Orleans, United States
Communication dans un congrès hal-03723551v3
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What's a good imputation to predict with missing values?

Marine Le Morvan , Julie Josse , Erwan Scornet , Gaël Varoquaux
NeurIPS 2021 - 35th Conference on Neural Information Processing Systems, Dec 2021, Virtual, France
Communication dans un congrès hal-03243931v2
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Accounting for variance in machine learning benchmarks

Xavier Bouthillier , Pierre Delaunay , Mirko Bronzi , Assya Trofimov , Brennan Nichyporuk
MLsys 2021 - 4th Conference on Machine Learning and Systems, Apr 2021, San Francisco (virtual), United States
Communication dans un congrès hal-03177159v1
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AI as statistical methods for imperfect theories

Gaël Varoquaux
NeurIPS 2021 - 35th Conference on Neural Information Processing Systems. Workshop: AI for Science, Dec 2021, Virtual, France
Communication dans un congrès hal-03474791v2
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A lightweight neural model for biomedical entity linking

Lihu Chen , Gaël Varoquaux , Fabian Suchanek
AAAI 2021 - The Thirty-Fifth Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, Feb 2021, Palo Alto (virtual), United States. pp.12657-12665
Communication dans un congrès hal-03086044v2
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Linear predictor on linearly-generated data with missing values: non consistency and solutions

Marine Le Morvan , Nicolas Prost , Julie Josse , Erwan Scornet , Gaël Varoquaux
AISTATS 2020 - International Conference on Artificial Intelligence and Statistics, Aug 2020, Online, France. pp.3165-3174
Communication dans un congrès hal-02464569v2
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NeuMiss networks: differentiable programming for supervised learning with missing values

Marine Le Morvan , Julie Josse , Thomas Moreau , Erwan Scornet , Gaël Varoquaux
NeurIPS 2020 - 34th Conference on Neural Information Processing Systems, Dec 2020, Vancouver / Virtual, Canada
Communication dans un congrès hal-02888867v3
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Comparing distributions: $l1$ geometry improves kernel two-sample testing

Meyer Scetbon , Gaël Varoquaux
NeurIPS 2019 - 33th Conference on Neural Information Processing Systems, Dec 2019, Vancouver, Canada
Communication dans un congrès hal-02292545v2
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Feature Grouping as a Stochastic Regularizer for High-Dimensional Structured Data

Sergül Aydöre , Bertrand Thirion , Gaël Varoquaux
NeurIPS 2019 - 33th Annual Conference on Neural Information Processing Systems, Dec 2019, Vancouver, Canada
Communication dans un congrès hal-02318458v1
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Manifold-regression to predict from MEG/EEG brain signals without source modeling

David Sabbagh , Pierre Ablin , Gaël Varoquaux , Alexandre Gramfort , Denis Engemann
NeurIPS 2019 - 33th Annual Conference on Neural Information Processing Systems, Dec 2019, Vancouver, Canada
Communication dans un congrès hal-02147708v2
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Controlling a confound in predictive models with a test set minimizing its effect

Darya Chyzhyk , Gaël Varoquaux , Bertrand Thirion , Michael Milham
PRNI 2018 - 8th International Workshop on Pattern Recognition in Neuroimaging, Jun 2018, Singapore, Singapore. pp.1-4
Communication dans un congrès hal-01831701v1
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Text to brain: predicting the spatial distribution of neuroimaging observations from text reports

Jérôme Dockès , Demian Wassermann , Russell Poldrack , Fabian M. Suchanek , Bertrand Thirion
MICCAI 2018 - 21st International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2018, Granada, Spain. pp.1-18
Communication dans un congrès hal-01807295v3
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Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging

Danilo Bzdok , Michael Eickenberg , Gaël Varoquaux , Bertrand Thirion
International conference on Information Processing in Medical Imaging (IPMI) 2017, Jun 2017, Boone, North Carolina, United States
Communication dans un congrès hal-01480885v1
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Learning Neural Representations of Human Cognition across Many fMRI Studies

Arthur Mensch , Julien Mairal , Danilo Bzdok , Bertrand Thirion , Gaël Varoquaux
Neural Information Processing Systems, Dec 2017, Long Beach, United States
Communication dans un congrès hal-01626823v3
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Population-shrinkage of covariance to estimate better brain functional connectivity

Mehdi Rahim , Bertrand Thirion , Gaël Varoquaux
Medical Image Computing and Computer Assisted Interventions, Sep 2017, Quebec city, Canada
Communication dans un congrès hal-01547612v1
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Towards a Faster Randomized Parcellation Based Inference

Andrés Hoyos-Idrobo , Gaël Varoquaux , Bertrand Thirion
PRNI 2017 - 7th International Workshop on Pattern Recognition in NeuroImaging, Jun 2017, Toronto, Canada
Communication dans un congrès hal-01552237v1

Label scarcity in biomedicine: Data-rich latent factor discovery enhances phenotype prediction

Marc-Andre Schulz , Gaël Varoquaux , Alexandre Gramfort , Bertrand Thirion , Danilo Bzdok
Neural Information Processing Systems, Machine Learning in Health Workshop, Dec 2017, Long Beach, United States
Communication dans un congrès hal-01633096v1
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Multi-output predictions from neuroimaging: assessing reduced-rank linear models

Mehdi Rahim , Bertrand Thirion , Gaël Varoquaux
PRNI 2017 - The 7th International Workshop on Pattern Recognition in Neuroimaging, Jun 2017, Toronto, Canada. pp.1 - 4, ⟨10.1109/PRNI.2017.7981504⟩
Communication dans un congrès hal-01547572v2
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Learning to Discover Sparse Graphical Models

Eugene B Belilovsky , Kyle Kastner , Gaël Varoquaux , Matthew B Blaschko
International Conference on Machine Learning , Aug 2017, Sydney, Australia
Communication dans un congrès hal-01306491v4
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Fast brain decoding with random sampling and random projections

Andrés Hoyos-Idrobo , Gaël Varoquaux , Bertrand Thirion
PRNI 2016: the 6th International Workshop on Pattern Recognition in Neuroimaging, Jun 2016, Trento, Italy
Communication dans un congrès hal-01313814v1
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Subsampled online matrix factorization with convergence guarantees

Arthur Mensch , Julien Mairal , Gaël Varoquaux , Bertrand Thirion
NIPS Workshop on Optimization for Machine Learning, Dec 2016, Barcelone, Spain
Communication dans un congrès hal-01405058v1

The Brain Imaging Data Structure: a format for organizing and describing neuroimaging data

Krzysztof Gorgolewski , Tibor Auer , Vince D Calhoun , Cameron Craddock , Samir Das
22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM 2016), Jun 2016, Geneva, Switzerland
Communication dans un congrès inserm-01570685v1
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Comparing functional connectivity based predictive models across datasets

Kamalaker Dadi , Alexandre Abraham , Mehdi Rahim , Bertrand Thirion , Gaël Varoquaux
PRNI 2016: 6th International Workshop on Pattern Recognition in Neuroimaging, Jun 2016, Trento, Italy
Communication dans un congrès hal-01319131v1
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Local Q-Linear Convergence and Finite-time Active Set Identification of ADMM on a Class of Penalized Regression Problems

Elvis Dohmatob , Michael Eickenberg , Bertrand Thirion , Gaël Varoquaux
ICASSP, International Conference on Acoustics, Speach, and Signal Processing, Mar 2016, http://icassp2016.org/default.asp, China
Communication dans un congrès hal-01265372v1
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Learning brain regions via large-scale online structured sparse dictionary-learning

Elvis Dohmatob , Arthur Mensch , Gaël Varoquaux , Bertrand Thirion
Neural Information Processing Systems (NIPS), Dec 2016, Barcelona, Spain
Communication dans un congrès hal-01369134v3
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Dictionary Learning for Massive Matrix Factorization

Arthur Mensch , Julien Mairal , Bertrand Thirion , Gaël Varoquaux
International Conference on Machine Learning, Jun 2016, New York, United States. pp.1737-1746
Communication dans un congrès hal-01308934v2
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Testing for Differences in Gaussian Graphical Models: Applications to Brain Connectivity

Eugene Belilovsky , Gaël Varoquaux , Matthew B. Blaschko
Neural Information Processing Systems (NIPS) 2016, Dec 2016, Barcelona, Spain
Communication dans un congrès hal-01248844v4
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Compressed Online Dictionary Learning for Fast Resting-State fMRI Decomposition

Arthur Mensch , Gaël Varoquaux , Bertrand Thirion
International Symposium on Biomedical Imaging, IEEE, Apr 2016, Prague, Czech Republic. pp.1282-1285, ⟨10.1109/ISBI.2016.7493501⟩
Communication dans un congrès hal-01271033v2
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Social-sparsity brain decoders: faster spatial sparsity

Gaël Varoquaux , Matthieu Kowalski , Bertrand Thirion
Pattern Recognition in NeuroImaging, Jun 2016, Trento, Italy
Communication dans un congrès hal-01334551v1
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FAASTA: A fast solver for total-variation regularization of ill-conditioned problems with application to brain imaging

Gaël Varoquaux , Michael Eickenberg , Elvis Dohmatob , Bertand Thirion
Colloque GRETSI, P. Gonçalves, P. Abry, Sep 2015, Lyon, France
Communication dans un congrès hal-01247388v1
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Speeding-up model-selection in GraphNet via early-stopping and univariate feature-screening

Elvis Dohmatob , Michael Eickenberg , Bertrand Thirion , Gaël Varoquaux
PRNI, Jun 2015, Stanford, United States
Communication dans un congrès hal-01147731v1
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Improving sparse recovery on structured images with bagged clustering

Andrés Hoyos-Idrobo , Yannick Schwartz , Gaël Varoquaux , Bertrand Thirion
International Workshop On Pattern Recognition In Neuroimaging (PRNI), 2015, Jun 2015, Palo alto, United States
Communication dans un congrès hal-01174335v1

NeuroVault.org: new features and a proof of concept analysis

Krzysztof Gorgolewski , Gaël Varoquaux , Gabriel Rivera , Joseph Wexler , Yannick Schwartz
21st Annual Meeting of the Organization for Human Brain Mapping (OHBM 2015), Jun 2015, Honolulu, United States
Communication dans un congrès inserm-01570688v1
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Total Variation meets Sparsity: statistical learning with segmenting penalties

Michael Eickenberg , Elvis Dohmatob , Bertrand Thirion , Gaël Varoquaux
Medical Image Computing and Computer Aided Intervention (MICCAI), Oct 2015, München, Germany
Communication dans un congrès hal-01170619v1
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Fast clustering for scalable statistical analysis on structured images

Bertrand Thirion , Andrés Hoyos-Idrobo , Jonas Kahn , Gaël Varoquaux
ICML Workshop on Statistics, Machine Learning and Neuroscience (Stamlins 2015), Bertrand Thirion, Lars Kai Hansen, Sanmi Koyejo, Jul 2015, Lille, France
Communication dans un congrès hal-01229023v2
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Correlations of correlations are not reliable statistics: implications for multivariate pattern analysis.

Bertrand Thirion , Fabian Pedregosa , Michael Eickenberg , Gaël Varoquaux
ICML Workshop on Statistics, Machine Learning and Neuroscience (Stamlins 2015), Bertrand Thirion, Lars Kai Hansen, Sanmi Koyejo, Jul 2015, Lille, France
Communication dans un congrès hal-01187297v1
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Semi-Supervised Factored Logistic Regression for High-Dimensional Neuroimaging Data

Danilo Bzdok , Michael Eickenberg , Olivier Grisel , Bertrand Thirion , Gaël Varoquaux
NIPS'15: 28th International Conference on Neural Information Processing Systems, Dec 2015, Montreal, Canada
Communication dans un congrès hal-01211248v1
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Integrating Multimodal Priors in Predictive Models for the Functional Characterization of Alzheimer's Disease

Mehdi Rahim , Bertrand Thirion , Alexandre Abraham , Michael Eickenberg , Elvis Dohmatob
Medical Image Computing and Computer Assisted Intervention, Oct 2015, Munich, Germany. ⟨10.1007/978-3-319-24553-9_26⟩
Communication dans un congrès hal-01174636v1
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Principal Component Regression predicts functional responses across individuals

Bertrand Thirion , Gaël Varoquaux , Olivier Grisel , Cyril Poupon , Philippe Pinel
MICCAI, Sep 2014, Boston, United States
Communication dans un congrès hal-01015173v1
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Deriving a multi-subject functional-connectivity atlas to inform connectome estimation

Ronald Phlypo , Bertrand Thirion , Gaël Varoquaux
Medical Image Computing and Computer-Assisted Intervention, Sep 2014, Boston, United States. pp.185-192, ⟨10.1007/978-3-319-10443-0_24⟩
Communication dans un congrès hal-00991124v4
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Transport on Riemannian Manifold for Functional Connectivity-based Classification

Bernard Ng , Martin Dressler , Gaël Varoquaux , Jean-Baptiste Poline , Michael D. Greicius
MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Polina Golland, Sep 2014, Boston, United States
Communication dans un congrès hal-01058521v1
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Benchmarking solvers for TV-l1 least-squares and logistic regression in brain imaging

Elvis Dohmatob , Alexandre Gramfort , Bertrand Thirion , Gaël Varoquaux
PRNI 2014 - 4th International Workshop on Pattern Recognition in NeuroImaging, Jun 2014, Tübingen, Germany
Communication dans un congrès hal-00991743v1
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A Comparison of Metrics and Algorithms for Fiber Clustering

Viviana Siless , Sergio Medina , Gaël Varoquaux , Bertrand Thirion
Pattern Recognition in NeuroImaging, Jun 2013, Philadelphia, United States
Communication dans un congrès hal-00858115v1
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Extracting brain regions from rest fMRI with Total-Variation constrained dictionary learning

Alexandre Abraham , Elvis Dohmatob , Bertrand Thirion , Dimitris Samaras , Gaël Varoquaux
MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Sep 2013, Nagoya, Japan
Communication dans un congrès hal-00853242v1
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Implications of Inconsistencies between fMRI and dMRI on Multimodal Connectivity Estimation

Bernard Ng , Gaël Varoquaux , Jean-Baptiste Poline , Bertrand Thirion
MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Kensaku Mori, Sep 2013, Nagoya, Japan
Communication dans un congrès hal-00853108v1
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A Novel Sparse Group Gaussian Graphical Model for Functional Connectivity Estimation

Bernard Ng , Gaël Varoquaux , Jean-Baptiste Poline , Bertrand Thirion
Information Processing in Medical Imaging, Jun 2013, Asilomar, United States
Communication dans un congrès hal-00842607v1
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Identifying predictive regions from fMRI with TV-L1 prior

Alexandre Gramfort , Bertrand Thirion , Gaël Varoquaux
Pattern Recognition in Neuroimaging (PRNI), Jun 2013, Philadelphia, United States
Communication dans un congrès hal-00839984v1
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Enhancing the Reproducibility of Group Analysis with Randomized Brain Parcellations

Benoit da Mota , Virgile Fritsch , Gaël Varoquaux , Vincent Frouin , Jean-Baptiste Poline
MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Sep 2013, Nagoya, Japan
Communication dans un congrès hal-00832616v1
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Cohort-level brain mapping: learning cognitive atoms to single out specialized regions

Gaël Varoquaux , Yannick Schwartz , Philippe Pinel , Bertrand Thirion
IPMI - Information Processing in Medical Imaging - 2013, William M. Wells, Sarang Joshi, Kilian M. Pohl, Jun 2013, Asilomar, United States. pp.438-449, ⟨10.1007/978-3-642-38868-2_37⟩
Communication dans un congrès hal-00841502v1
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API design for machine learning software: experiences from the scikit-learn project

Lars Buitinck , Gilles Louppe , Mathieu Blondel , Fabian Pedregosa , Andreas Mueller
European Conference on Machine Learning and Principles and Practices of Knowledge Discovery in Databases, Sep 2013, Prague, Czech Republic
Communication dans un congrès hal-00856511v1
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Hemodynamic estimation based on Consensus Clustering

Solveig Badillo , Gaël Varoquaux , Philippe Ciuciu
PRNI 2013 -- 3rd International Workshop on Pattern Recognition in NeuroImaging, Jun 2013, Philadelphia, United States
Communication dans un congrès hal-00854621v1
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Robust Group-Level Inference in Neuroimaging Genetic Studies

Virgile Fritsch , Benoit da Mota , Gaël Varoquaux , Vincent Frouin , Eva Loth
Pattern Recognition in Neuroimaging, Jun 2013, Philadelphie, United States
Communication dans un congrès hal-00833953v1
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Mapping cognitive ontologies to and from the brain

Yannick Schwartz , Bertrand Thirion , Gaël Varoquaux
NIPS (Neural Information Processing Systems), Dec 2013, United States
Communication dans un congrès hal-00904763v2
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A fast computational framework for genome-wide association studies with neuroimaging data

Benoit da Mota , Vincent Frouin , Edouard Duchesnay , Soizic Laguitton , Gaël Varoquaux
20th International Conference on Computational Statistics (COMPSTAT 2012), Aug 2012, Limassol, Cyprus
Communication dans un congrès hal-00720265v1
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A Novel Sparse Graphical Approach for Multimodal Brain Connectivity Inference

Bernard Ng , Gaël Varoquaux , Jean-Baptiste Poline , Bertrand Thirion
Medical Image Computing and Computer Assisted Intervention, Oct 2012, Nice, France
Communication dans un congrès hal-00741631v1
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Non-parametric Density Modeling and Outlier Detection in Medical Imaging Datasets

Virgile Fritsch , Gaël Varoquaux , Jean-Baptiste Poline , Bertrand Thirion
Machine Learning in Medical Imaging - Miccai 2012 workshop, Oct 2012, Nice, France. pp.207-214
Communication dans un congrès hal-00738438v1
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A MapReduce Approach for Ridge Regression in Neuroimaging-Genetic Studies

Benoit da Mota , Michael Eickenberg , Soizic Laguitton , Vincent Frouin , Gaël Varoquaux
DCICTIA-MICCAI - Data- and Compute-Intensive Clinical and Translational Imaging Applications in conjonction with the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - 2012, Oct 2012, Nice, France
Communication dans un congrès hal-00730385v1
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Decoding Visual Percepts Induced by Word Reading with fMRI

Alexandre Gramfort , Christophe Pallier , Gaël Varoquaux , Bertrand Thirion
Pattern Recognition in NeuroImaging (PRNI), 2012 International Workshop on, Jul 2012, Londres, United Kingdom. pp.13-16, ⟨10.1109/PRNI.2012.20⟩
Communication dans un congrès hal-00730768v1
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Improved brain pattern recovery through ranking approaches

Fabian Pedregosa , Elodie Cauvet , Gaël Varoquaux , Christophe Pallier , Bertrand Thirion
PRNI 2012 : 2nd International Workshop on Pattern Recognition in NeuroImaging, Jul 2012, London, United Kingdom
Communication dans un congrès hal-00717954v1
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Connectivity-informed Sparse Classifiers for fMRI Brain Decoding

Bernard Ng , Viviana Siless , Gaël Varoquaux , Jean-Baptiste Poline , Bertrand Thirion
Pattern Recognition in Neuroimaging, Christos Davatzikos, Moritz Grosse-Wentrup, Janaina Mourao-Miranda, Dimitri Van De Ville, Jul 2012, London, United Kingdom
Communication dans un congrès hal-00726656v1
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Improving accuracy and power with transfer learning using a meta-analytic database

Yannick Schwartz , Gaël Varoquaux , Christophe Pallier , Philippe Pinel , Jean-Baptiste Poline
MICCAI, Oct 2012, Nice, France. pp.1-8
Communication dans un congrès hal-00734911v2
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Small-sample brain mapping: sparse recovery on spatially correlated designs with randomization and clustering

Gaël Varoquaux , Alexandre Gramfort , Bertrand Thirion
International Conference on Machine Learning, Andrew McCallum, Jun 2012, Edimbourg, United Kingdom
Communication dans un congrès hal-00705192v1
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Learning to rank from medical imaging data

Fabian Pedregosa , Elodie Cauvet , Gaël Varoquaux , Christophe Pallier , Bertrand Thirion
Third International Workshop on Machine Learning in Medical Imaging - MLMI 2012, INRIA, Oct 2012, Nice, France
Communication dans un congrès hal-00717990v2
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On spatial selectivity and prediction across conditions with fMRI

Yannick Schwartz , Gaël Varoquaux , Bertrand Thirion
PRNI 2012 : 2nd International Workshop on Pattern Recognition in NeuroImaging, Jul 2012, London, United Kingdom. pp.53-56
Communication dans un congrès hal-00728765v1
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A probabilistic framework to infer brain functional connectivity from anatomical connections

Fani Deligianni , Gaël Varoquaux , Bertrand Thirion , Emma Robinson , David J. Sharp
Information Processing in Medical Imaging, Gábor Székely, Horst Hahn, Jul 2011, Kaufbeuren, Germany. pp.296-307, ⟨10.1007/978-3-642-22092-0_25⟩
Communication dans un congrès inria-00627914v1
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Detecting Outlying Subjects in High-Dimensional Neuroimaging Datasets with Regularized Minimum Covariance Determinant

Virgile Fritsch , Gaël Varoquaux , Thyreau Benjamin , Jean-Baptiste Poline , Bertrand Thirion
Medical Image Computing and Computer Assisted Intervention, Sep 2011, Toronto, Canada. pp. 264-271, ⟨10.1007/978-3-642-23626-6_33⟩
Communication dans un congrès inria-00626857v1
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Connectivity-informed fMRI Activation Detection

Bernard Ng , Abugharbieh Rafeef , Gaël Varoquaux , Jean Baptiste Poline , Bertrand Thirion
Medical Image Computing and Computed Aided Intervention, Sep 2011, Toronto, Canada. pp.285-292, ⟨10.1007/978-3-642-23629-7_35⟩
Communication dans un congrès inria-00627523v1
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Statistical Learning for Resting-State fMRI: Successes and Challenges

Gaël Varoquaux , Bertrand Thirion
Machine Learning and Interpretation in Neuroimaging, NIPS workshop, Dec 2011, Sierra Nevada, Spain. pp.172-177, ⟨10.1007/978-3-642-34713-9_22⟩
Communication dans un congrès hal-00753132v1
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Multi-subject dictionary learning to segment an atlas of brain spontaneous activity

Gaël Varoquaux , Alexandre Gramfort , Fabian Pedregosa , Vincent Michel , Bertrand Thirion
Information Processing in Medical Imaging, Gábor Székely, Horst Hahn, Jul 2011, Kaufbeuren, Germany. pp.562-573, ⟨10.1007/978-3-642-22092-0_46⟩
Communication dans un congrès inria-00588898v2
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MULTIFRACTAL ANALYSIS OF RESTING STATE NETWORKS IN FUNCTIONAL MRI

Philippe Ciuciu , Gaël Varoquaux , Patrice Abry , Moty Almog
IEEE International Symposium on Biomedical Imaging, Mar 2011, Chicago, United States. paper ID 1544
Communication dans un congrès cea-00558870v1
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A Comparative Study of Algorithms for Intra- and Inter-subjects fMRI Decoding

Vincent Michel , Alexandre Gramfort , Evelyn Eger , Gaël Varoquaux , Bertrand Thirion
MLINI - Machine Learning and Interpretation in Neuroimaging - 2011, Dec 2011, Sierra Nevada, Spain. pp.1-8, ⟨10.1007/978-3-642-34713-9_1⟩
Communication dans un congrès hal-00753142v1
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Beyond brain reading: randomized sparsity and clustering to simultaneously predict and identify

Alexandre Gramfort , Gaël Varoquaux , Bertrand Thirion
NIPS 2011 MLINI Workshop, Dec 2011, Granada, Spain. pp.9-16, ⟨10.1007/978-3-642-34713-9_2⟩
Communication dans un congrès hal-00704875v1
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Detection of brain functional-connectivity difference in post-stroke patients using group-level covariance modeling

Gaël Varoquaux , Flore Baronnet , Andreas Kleinschmidt , Pierre Fillard , Bertrand Thirion
Medical Image Computing and Computer Added Intervention, Tianzi Jiang, Sep 2010, Beijing, China. ⟨10.1007/978-3-642-15705-9_25⟩
Communication dans un congrès inria-00512417v1
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Total Variation regularization enhances regression-based brain activity prediction

Vincent Michel , Alexandre Gramfort , Gaël Varoquaux , Bertrand Thirion
1st ICPR Workshop on Brain Decoding - Pattern recognition challenges in neuroimaging - 20th International Conference on Pattern Recognition, Aug 2010, Istanbul, Turkey. pp.9-12, ⟨10.1109/WBD.2010.13⟩
Communication dans un congrès hal-00504095v1
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Accurate Definition of Brain Regions Position Through the Functional Landmark Approach

Bertrand Thirion , Gaël Varoquaux , Jean-Baptiste Poline
13th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2010, Beijing, China
Communication dans un congrès inria-00521909v1
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ICA-based sparse feature recovery from fMRI datasets

Gaël Varoquaux , Merlin Keller , Jean Baptiste Poline , Philippe Ciuciu , Bertrand Thirion
Biomedical Imaging, IEEE International Symposium on, Apr 2010, Rotterdam, Netherlands. pp.1177
Communication dans un congrès hal-00489506v1
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Brain covariance selection: better individual functional connectivity models using population prior

Gaël Varoquaux , Alexandre Gramfort , Jean Baptiste Poline , Bertrand Thirion
Advances in Neural Information Processing Systems, John Lafferty, Dec 2010, Vancouver, Canada
Communication dans un congrès inria-00512451v4
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CanICA: Model-based extraction of reproducible group-level ICA patterns from fMRI time series

Gaël Varoquaux , Sepideh Sadaghiani , Jean Baptiste Poline , Bertrand Thirion
Medical Image Computing and Computer Aided Intervention, Sep 2009, London, United Kingdom. pp.1
Communication dans un congrès hal-00435262v1
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Proceedings of the 8th Python in Science conference

Gaël Varoquaux , Stefan van Der Walt , Jarrod Millman
SciPy 2009: 8th Python in Science Conference, Aug 2009, Pasadena, United States. pp.1-78
Communication dans un congrès hal-00502607v1
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Mayavi: Making 3D Data Visualization Reusable

Gaël Varoquaux , Prabhu Ramachandran
SciPy 2008: 7th Python in Science Conference, Aug 2008, Pasadena, United States. pp.51
Communication dans un congrès hal-00502548v1

Effects of disorder in 2D

Jean-Philippe Brantut , Gaël Varoquaux , Robert A. Nyman , Jean-François Clément , Martin Robert-De-Saint-Vincent
Latsis, Jan 2008, Lausanne, Switzerland
Communication dans un congrès hal-00637732v1

All-optical evaporative cooling in a versatile optical-dipole trap at telecom wavelength

Martin Robert-De-Saint-Vincent , Alain Aspect , Thomas Bourdel , Philippe Bouyer , Gaël Varoquaux
YAO, 2008, Florence, Italy
Communication dans un congrès hal-00637735v1
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Proceedings of the 7th Python in Science conference

Gaël Varoquaux , Travis Vaught , Jarrod Millman
SciPy 2008: 7th Python in Science Conference, Aug 2008, Pasadena, United States. pp.1-78
Communication dans un congrès hal-00502586v1
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I.C.E.: An Ultra-Cold Atom Source for Long-Baseline Interferometric Inertial Sensors in Reduced Gravity

Gaël Varoquaux , Nassim Zahzam , Walid Chaibi , Jean-François Clément , Olivier Carraz
Rencontres de Moriond Gravitational Waves and Experimental Gravity, Mar 2007, La Thuile, Val d'Aosta, Italy
Communication dans un congrès hal-00147641v3
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Relating Brain Structures To Open-Ended Descriptions Of Cognition

Jérôme Dockès , Olivier Grisel , Joan Massich , Fabian Suchanek , Bertrand Thirion
CCN 2017 - Conference on Cognitive Computational Neuroscience, Sep 2017, New York, United States. , 10 (2), pp.59 - 63, 2017, ⟨10.1016/j.tics.2005.12.004⟩
Poster de conférence hal-01699045v1
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SpaceNet: Multivariate brain decoding and segmentation

Elvis Dohmatob , Michael Eickenberg , Bertrand Thirion , Gaël Varoquaux
OHBM, Jun 2015, Honolulu, Hawaii, United States
Poster de conférence hal-01187230v1
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Region segmentation for sparse decompositions: better brain parcellations from rest fMRI

Alexandre Abraham , Elvis Dohmatob , Bertrand Thirion , Dimitris Samaras , Gael Varoquaux
Sparsity Techniques in Medical Imaging, Sep 2014, Boston, United States. pp.8
Document associé à des manifestations scientifiques hal-01093944v1
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Evaluating machine learning models and their diagnostic value

Gaël Varoquaux , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03682454v5
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On the consistency of supervised learning with missing values

Julie Josse , Jacob M. Chen , Nicolas Prost , Erwan Scornet , Gaël Varoquaux
2024
Pré-publication, Document de travail hal-02024202v5
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Retrieve, Merge, Predict: Augmenting Tables with Data Lakes (Experiment, Analysis & Benchmark Paper)

Riccardo Cappuzzo , Gaël Varoquaux , Aimee Coelho , Paolo Papotti
2024
Pré-publication, Document de travail hal-04509600v1

Risk ratio, odds ratio, risk difference... Which causal measure is easier to generalize?

Bénédicte Colnet , Julie Josse , Gaël Varoquaux , Erwan Scornet
2024
Pré-publication, Document de travail hal-04369607v1
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Causal thinking for decision making on Electronic Health Records: why and how

Matthieu Doutreligne , Tristan Struja , Judith Abecassis , Claire Morgand , Leo Anthony Celi
2023
Pré-publication, Document de travail hal-04174834v2
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Vectorizing string entries for data processing on tables: when are larger language models better?

Léo Grinsztajn , Myung Jun Kim , Edouard Oyallon , Gaël Varoquaux
2023
Pré-publication, Document de travail hal-04345931v1
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Individual Brain Charting third release, probing brain activity during Movie Watching and Retinotopic Mapping

Ana Luísa Pinho , Hugo Richard , Michael Eickenberg , Alexis Amadon , Elvis Dohmatob
2023
Pré-publication, Document de travail hal-04272993v1
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Confidence intervals for performance estimates in 3D medical image segmentation

Rosana El Jurdi , Gaël Varoquaux , Olivier Colliot
2023
Pré-publication, Document de travail hal-04166803v1
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How to select predictive models for decision making or causal inference?

Matthieu Doutreligne , Gaël Varoquaux
2023
Pré-publication, Document de travail hal-03946902v4
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Understanding metric-related pitfalls in image analysis validation

Annika Reinke , Minu D. Tizabi , Michael Baumgartner , Matthias Eisenmann , Doreen Heckmann-Nötzel
2023
Pré-publication, Document de travail hal-04345927v1
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Reweighting the RCT for generalization: finite sample error and variable selection

Bénédicte Colnet , Julie Josse , Gaël Varoquaux , Erwan Scornet
2022
Pré-publication, Document de travail hal-03822662v2

Hydroxychloroquine with or without azithromycin and in-hospital mortality or discharge in patients hospitalized for COVID-19 infection: a cohort study of 4,642 in-patients in France

Emilie Sbidian , Julie Josse , Guillaume Lemaître , Imke Mayer , Melodie Bernaux
2020
Pré-publication, Document de travail hal-02995319v1
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Beyond brain age: Empirically-derived proxy measures of mental health

Kamalaker Dadi , Gael Varoquaux , Josselin Houenou , Danilo Bzdok , Bertrand Thirion
2020
Pré-publication, Document de travail hal-02929857v1
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Fine-grain atlases of functional modes for fMRI analysis

Kamalaker Dadi , Gaël Varoquaux , Antonia Machlouzarides-Shalit , Krzysztof Jacek Gorgolewski , Demian Wassermann
2020
Pré-publication, Document de travail hal-02496156v1
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Approximate message-passing for convex optimization with non-separable penalties

Andre Manoel , Florent Krzakala , Bertrand Thirion , Gaël Varoquaux , Lenka Zdeborová
2018
Pré-publication, Document de travail cea-01932983v1
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Prediction and inference diverge in biomedicine: Simulations and real-world data

Danilo Bzdok , Denis Engemann , Olivier Grisel , Gaël Varoquaux , Bertrand Thirion
2018
Pré-publication, Document de travail hal-01848319v1
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Atomic sources for long-time-of-flight interferometric inertial sensors

Gaël Varoquaux
Atomic Physics [physics.atom-ph]. Université Paris Sud - Paris XI; Institut d'Optique, 2008. English. ⟨NNT : ⟩
Thèse tel-00265714v3