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Systems approach to decipher transcriptional networks controlling nitrogen and hormones signaling interactions

Gabriel Krouk
Plant Growth, Nutrition and Environment interactions, Feb 2012, Vienna, Austria
Communication dans un congrès hal-02803790v1
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Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Mariana Obertello , Gabriel Krouk , Manpreet S Katari , Suzan J Runko , Gloria M Coruzzi
BMC Systems Biology, 2010, 4, pp.111. ⟨10.1186/1752-0509-4-111⟩
Article dans une revue hal-00533076v1

Nitrate signalling: Calcium bridges the nitrate gap.

Gabriel Krouk
Nature Plants, 2017, 3, pp.17095. ⟨10.1038/nplants.2017.95⟩
Article dans une revue hal-01594831v1

Long-distance nitrate signaling displays cytokinin dependent and independent branches.

Sandrine Ruffel , Arthur Poitout , Gabriel Krouk , Gloria M Coruzzi , Benoît Lacombe
Journal of Integrative Plant Biology, 2016, 58 (3), pp.226-9. ⟨10.1111/jipb.12453⟩
Article dans une revue hal-01321526v1
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Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann , et al.
INRAE / Protéomevert, INRAE; Visioconférence, Jun 2021, Paris (en ligne), France
Communication dans un congrès hal-04178068v1
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Nitrate transport, sensing and responses in plants

José A. O’brien , Andrea Vega , Eléonore Bouguyon , Gabriel Krouk , Alain Gojon , et al.
Molecular Plant, 2016, 9 (6), pp.837-856. ⟨10.1016/j.molp.2016.05.004⟩
Article dans une revue hal-01595480v1
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Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean Baptiste Carluer , Christian Chaux , Chad Estoup-Streiff , Nicolas Roche , et al.
Genome Biology, 2024, 25 (1), pp.76. ⟨10.1186/s13059-024-03202-0⟩
Article dans une revue hal-04532636v1
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Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

Matthew D Brooks , Jacopo Cirrone , Angelo V Pasquino , José M Alvarez , Joseph Swift , et al.
Nature Communications, 2019, 10, pp.1569. ⟨10.1038/s41467-019-09522-1⟩
Article dans une revue hal-02122905v1

Phenotyping, ecophysiology and molecular physiology to characterize plant root system architecture and plant-plant and plant-microorganisms interactions

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel Krouk , et al.
EPPN 2021 European Plant Phenotyping Network, May 2021, Vituel, France
Communication dans un congrès hal-03299527v1

Les défis méthodologiques du phénotypage Haut Débit - Expectations of plant high throughput phenotyping and associated tools and methods

Christophe Salon , Arkoum, Mustapha , Bastien Billiot , Virginie Bourion , Pierre Dubreuil , et al.
Prospectives de l’INEE, Institut Ecologie et environnement du CNRS, Oct 2022, La Rochelle, France
Communication dans un congrès hal-03994582v1

Nitrogen signalling from and to nitrate transporters in Arabidopsis

Alain Gojon , Gabriel Krouk , Thomas Girin , Francine Manuella Perrine Walker , Saied El Khafafi , et al.
"Nitrogen 2010" 1st International Symposium on the Nitrogen Nutrition of Plants, Jul 2010, Aichi, Japan
Communication dans un congrès hal-02814889v1

Identification of molecular integrators shows that nitrogen actively controls the phosphate starvation response in plants

Anna Medici , Wojciech Szponarski , Pierre Dangeville , Alaeddine Safi , Indeewari Madhubhashini Dissanayake , et al.
The Plant cell, 2019, 31 (5), pp.1171-1184. ⟨10.1105/tpc.18.00656⟩
Article dans une revue hal-02107616v1

Unleashing the potential of peptides in agriculture and beyond

Gabriel Krouk , Wojciech Szponarski , Sandrine Ruffel
Trends in Plant Science, 2023, 28 (7), pp.734-736. ⟨10.1016/j.tplants.2023.03.025⟩
Article dans une revue hal-04089178v1

ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis

Huikyong Cho , Michael Banf , Zaigham Shahzad , Jelle van Leene , Flavia Bossi , et al.
Current Biology - CB, 2023, 33 (9), pp.1778-1786.e5. ⟨10.1016/j.cub.2023.03.005⟩
Article dans une revue hal-04044845v1

Hormones and nitrate: a two-way connection.

Gabriel Krouk
Plant Molecular Biology, 2016, 91 (6), pp.599-606. ⟨10.1007/s11103-016-0463-x⟩
Article dans une revue hal-01321091v1

A systems view of nitrogen signaling interactions

Gabriel Krouk
International Congress "Nitrogen 2016" EMBO Conference: The Nitrogen Nutrition of Plant, Aug 2016, Montpellier, France
Communication dans un congrès hal-01384419v1
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Full epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean Baptiste Carluer , Christian Chaux , Nicolas Roche , André Mas , et al.
2022
Pré-publication, Document de travail hal-03749709v1
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Gene regulatory networks in plants: learning causality from time and perturbation.

Gabriel Krouk , Jesse Lingeman , Amy Marshall Colon , Gloria Coruzzi , Dennis Shasha
Genome Biology, 2013, 14 (6), pp.123. ⟨10.1186/gb-2013-14-6-123⟩
Article dans une revue hal-00920683v1

Two nitrate sensors, how many more?

Jordan Courrèges-Clercq , Gabriel Krouk
Nature Plants, 2022, 8 (11), pp.1212-1213. ⟨10.1038/s41477-022-01276-x⟩
Article dans une revue hal-03844368v1

Gene Regulatory Networks: Lessons from plants

Gabriel Krouk
Systems Biology Conference (LyonSysBio), Nov 2017, Villeurbanne, France
Communication dans un congrès hal-01840943v1

Iron and ROS control of the DownSTream mRNA decay pathway is essential for plant fitness.

Karl Ravet , Guilhem Reyt , Nicolas Arnaud , Gabriel Krouk , El-Batoul Djouani , et al.
EMBO Journal, 2012, 31 (1), pp.175-86. ⟨10.1038/emboj.2011.341⟩
Article dans une revue hal-00777600v1

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Joanna Friesner , Sarah M Assmann , Ruth Bastow , Julia Bailey-Serres , Jim Beynon , et al.
Plant Physiology, 2017, 175 (4), pp.1499-1509. ⟨10.1104/pp.17.01490⟩
Article dans une revue hal-01769299v1
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Nitrogen sensing and regulatory networks: It’s about time and space

Carly M Shanks , Karin Rothkegel , Matthew D Brooks , Chia-Yi Cheng , José M Alvarez , et al.
The Plant cell, 2024, ⟨10.1093/plcell/koae038⟩
Article dans une revue hal-04479330v1

GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions

Gabriel Krouk , Clément Carré , Cecile Fizames , Alain Gojon , Sandrine Ruffel , et al.
Plant Molecular Biology, 2015, 8 (6), pp.971-973. ⟨10.1016/j.molp.2015.02.005⟩
Article dans une revue hal-01180663v1
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Root Responses to Heterogeneous Nitrate Availability are Mediated by trans-Zeatin in Arabidopsis Shoots

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk , et al.
2018
Pré-publication, Document de travail hal-01777537v1
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Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root

Daniela Ristova , Clement Carre , Marjorie Pervent , Anna Medici , Grace Jaeyoon Kim , et al.
Science Signaling, 2016, 9 (451), pp.rs13. ⟨10.1126/scisignal.aaf2768⟩
Article dans une revue hal-01595027v1

The world according to GARP transcription factors.

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Sandrine Ruffel , Benoît Lacombe , et al.
Current Opinion in Plant Biology, 2017, 39, pp.159-167. ⟨10.1016/j.pbi.2017.07.006⟩
Article dans une revue hal-01595209v1

Modeling water transport and perceiving water deficit

Yann Boursiac , Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel , et al.
NUPRAG symposium on integrative plant biology, Feb 2023, Umea, Sweden
Communication dans un congrès hal-04460135v1

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Ying Li , Gabriel Krouk , Gloria M Coruzzi , Sandrine Ruffel
Journal of Experimental Botany, 2014, 65 (19), pp.5601-10. ⟨10.1093/jxb/eru263⟩
Article dans une revue hal-01118819v1
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Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Elena A Vidal , Tomás C Moyano , Gabriel Krouk , Manpreet S Katari , Milos Tanurdzic , et al.
BMC Genomics, 2013, 14 (1), pp.701. ⟨10.1186/1471-2164-14-701⟩
Article dans une revue hal-00921251v1