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Frédéric Partensky

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Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria

Louison Dufour , Laurence Garczarek , Bastian Gouriou , Julia Clairet , Morgane Ratin
Frontiers in Microbiology, 2024, 15, pp.1349322. ⟨10.3389/fmicb.2024.1349322⟩
Article dans une revue hal-04467770v1
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Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

Hugo Doré , Ulysse Guyet , Jade Leconte , Gregory Farrant , Benjamin Alric
The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩
Article dans une revue hal-04238382v1
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Crystal structure and molecular mechanism of an E/F type bilin lyase-isomerase

Indika Kumarapperuma , Kes Lynn Joseph , Cong Wang , Linta Biju , Irin Tom
Structure, 2022, 30 (4), pp.564-574.E3. ⟨10.1016/j.str.2022.01.007⟩
Article dans une revue hal-03631913v1
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Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts

Hugo Doré , Jade Leconte , Ulysse Guyet , Solène Breton , Gregory Farrant
mSystems, 2022, 7 (6), ⟨10.1128/msystems.00656-22⟩
Article dans une revue hal-03971550v2
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Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas

Mathilde Ferrieux , Louison Dufour , Hugo Doré , Morgane Ratin , Audrey Guéneuguès
Frontiers in Microbiology, 2022, 13, pp.893413. ⟨10.3389/fmicb.2022.893413⟩
Article dans une revue hal-03768045v1
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The phycoerythrobilin isomerization activity of MpeV in Synechococcus sp. WH8020 is prevented by the presence of a histidine at position 141 within its phycoerythrin-I β-subunit substrate

Lyndsay A Carrigee , Jacob P Frick , Xindi Liu , Jonathan A Karty , Jonathan C Trinidad
Frontiers in Microbiology, 2022, 13, pp.1011189. ⟨10.3389/fmicb.2022.1011189⟩
Article dans une revue hal-03854368v1
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Diversity and evolution of pigment types in marine $Synechococcus$ cyanobacteria

Théophile Grébert , Laurence Garczarek , Vincent Daubin , Florian Humily , Dominique Marie
Genome Biology and Evolution, 2022, 14 (4), pp.evac035. ⟨10.1093/gbe/evac035⟩
Article dans une revue hal-03641745v1
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Multiple photolyases protect the marine cyanobacterium Synechococcus from ultraviolet radiation

Allissa Haney , Joseph Sanfilippo , Laurence Garczarek , Frédéric Partensky , David Kehoe
mBio, 2022, 13 (4), pp.01511-22. ⟨10.1128/mbio.01511-22⟩
Article dans une revue hal-03778941v1
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Molecular bases of an alternative dual-enzyme system for light color acclimation of marine $Synechococcus$ cyanobacteria

Théophile Grébert , Adam A Nguyen , Suman Pokhrel , Kes Lynn , Morgane Ratin
Proceedings of the National Academy of Sciences of the United States of America, 2021, ⟨10.1073/pnas.2019715118⟩
Article dans une revue hal-03153666v1
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Vibrational modes of water predict spectral niches for photosynthesis in lakes and oceans

Tadzio Holtrop , Jef Huisman , Maayke Stomp , Levi Biersteker , Jeroen Aerts
Nature Ecology & Evolution, 2021, ⟨10.1038/s41559-020-01330-x⟩
Article dans une revue hal-02999397v1
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Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

Laurence Garczarek , Ulysse Guyet , Hugo Doré , Gregory Farrant , Mark Hoebeke
Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩
Article dans une revue hal-02988562v1
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MpeV is a lyase isomerase that ligates a doubly linked phycourobilin on the β-subunit of phycoerythrin I and II in marine Synechococcus

Lyndsay Carrigee , Jacob Frick , Jonathan Karty , Laurence Garczarek , Frédéric Partensky
Journal of Biological Chemistry, 2021, 296, pp.100031. ⟨10.1074/jbc.RA120.015289⟩
Article dans une revue hal-03971277v2
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Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803

Ulysse Guyet , Ngoc Thanh Nguyen , Hugo Doré , Julie Haguait , Justine Pittera
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01707⟩
Article dans une revue hal-02929424v1
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Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria

Hugo Doré , Gregory Farrant , Ulysse Guyet , Julie Haguait , Florian Humily
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.567431⟩
Article dans une revue hal-02938656v1
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Unveiling membrane thermoregulation strategies in marine picocyanobacteria

Solène Breton , Juliette Jouhet , Ulysse Guyet , Valérie Gros , Justine Pittera
New Phytologist, 2020, 225 (6), pp.2396-2410. ⟨10.1111/nph.16239⟩
Article dans une revue hal-02323286v1
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Chromatic Acclimation in Cyanobacteria: A Diverse and Widespread Process for Optimizing Photosynthesis

Joseph E Sanfilippo , Laurence Garczarek , Frédéric Partensky , David M Kehoe
Annual Review of Microbiology, 2019, 73 (1), pp.407-433. ⟨10.1146/annurev-micro-020518-115738⟩
Article dans une revue hal-02322722v1
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Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus

Joseph E Sanfilippo , Adam A Nguyen , Laurence Garczarek , Jonathan A Karty , Suman Pokhrel
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (13), pp.6457-6462. ⟨10.1073/pnas.1810491116⟩
Article dans une revue hal-02322866v1
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Comparison of photosynthetic performances of marine picocyanobacteria with different configurations of the oxygen-evolving complex

Frédéric Partensky , Daniella Mella-Flores , Christophe Six , Laurence Garczarek , Mirjam Czjzek
Photosynthesis Research, 2018, 138 (1), pp.57 - 71. ⟨10.1007/s11120-018-0539-3⟩
Article dans une revue hal-01823168v1
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A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle

Frédéric Partensky , Christophe Six , Morgane Ratin , Laurence Garczarek , Daniel Vaulot
Scientific Reports, 2018, 8 (1), pp.9142. ⟨10.1038/s41598-018-27542-7⟩
Article dans une revue hal-01805749v1
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Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus

Justine Pittera , Juliette Jouhet , Solène Breton , Laurence Garczarek , Frédéric Partensky
Environmental Microbiology, 2018, 20 (2), pp.612-631. ⟨10.1111/1462-2920.13985⟩
Article dans une revue hal-01699416v1

Alain Sournia, phycologist and philosopher (1940-2018)

Frédéric Partensky , Daniel Vaulot
Cahiers de Biologie Marine, 2018, 59, pp.403-407. ⟨10.21411/CBM.A.EA424D0A⟩
Article dans une revue hal-03971071v1
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Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria

Théophile Grébert , Hugo Doré , Frédéric Partensky , Gregory Farrant , Emmanuel Boss
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (9), pp.E2010-E2019. ⟨10.1073/pnas.1717069115⟩
Article dans une revue hal-01772758v1
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Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria

Justine Pittera , Frédéric Partensky , Christophe Six
The International Society of Microbiologial Ecology Journal, 2017, 11 (1), pp.112 - 124. ⟨10.1038/ismej.2016.102⟩
Article dans une revue hal-01509871v1
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Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress

Marie L. Cuvelier , Jian Guo , Alejandra C. Ortiz , Marijke J. van Baren , Muhammad Akram Tariq
PLoS ONE, 2017, 12 (3), pp.e0172135. ⟨10.1371/journal.pone.0172135⟩
Article dans une revue hal-01490543v1
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Adaptation to Blue Light in Marine Synechococcus Requires MpeU, an Enzyme with Similarity to Phycoerythrobilin Lyase Isomerases

Rania M. Mahmoud , Joseph E. Sanfilippo , Adam A. Nguyen , Johann A. Strnat , Frédéric Partensky
Frontiers in Microbiology, 2017, 8, pp.243. ⟨10.3389/fmicb.2017.00243⟩
Article dans une revue hal-01490531v1
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Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Gregory K. Farrant , Hugo Doré , Francisco M. Cornejo-Castillo , Frédéric Partensky , Morgane Ratin
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (24), pp.E3365-E3374. ⟨10.1073/pnas.1524865113⟩
Article dans une revue hal-01331214v1
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Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern Pacific Ocean

Xiaomin Xia , Frédéric Partensky , Laurence Garczarek , Koji Suzuki , Cui Guo
Environmental Microbiology, 2016, 19 (1), pp.142-158 ⟨10.1111/1462-2920.13541⟩
Article dans une revue hal-01377154v1
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Self-regulating genomic island encoding tandem regulators confers chromatic acclimation to marine Synechococcus

Joseph E. Sanfilippo , Adam A. Nguyen , Jonathan A. Karty , Animesh Shukla , Wendy M. Schluchter
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (21), pp.6077-6082. ⟨10.1073/pnas.1600625113⟩
Article dans une revue hal-01320666v1
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WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data

Gregory K. Farrant , Mark Hoebeke , Frédéric Partensky , Gwendoline Andres , Erwan Corre
BMC Bioinformatics, 2015, 16 pp.281. ⟨10.1186/s12859-015-0705-y⟩
Article dans une revue hal-01193001v1
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Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus

Florian Humily , Gregory K. Farrant , Dominique Marie , Frédéric Partensky , Sophie Mazard
FEMS Microbiology Ecology, 2014, 88 (2), pp.231-249. ⟨10.1111/1574-6941.12285⟩
Article dans une revue hal-01100993v1

Ecological and evolutionary genomics of marine photosynthetic organisms.

Susana M Coelho , Nathalie Simon , Sophia Ahmed , J Mark Cock , Frédéric Partensky
Molecular Ecology, 2013, 22 (3), pp.867-907. ⟨10.1111/mec.12000⟩
Article dans une revue hal-00817749v1
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Jonas Collén , Betina Porcel , Wilfrid Carré , Steven G Ball , Cristian Chaparro
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩
Article dans une revue hal-01073830v1
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A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus

Florian Humily , Frédéric Partensky , Christophe Six , Gregory K. Farrant , Morgane Ratin
PLoS ONE, 2013, 8 (12), pp.e84459. ⟨10.1371/journal.pone.0084459⟩
Article dans une revue hal-01218505v1

Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus

Sophie Mazard , Martin Ostrowski , Frédéric Partensky , David J. Scanlan
Environmental Microbiology, 2012, 14 (2), pp.372-386. ⟨10.1111/j.1462-2920.2011.02514.x⟩
Article dans une revue hal-01218506v1
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Prochlorococcus and Synechococcus have Evolved Different Adaptive Mechanisms to Cope with Light and UV Stress.

Daniella Mella-Flores , Christophe Six , Morgane Ratin , Frédéric Partensky , Christophe Boutte
Frontiers in Microbiology, 2012, 3, pp.285. ⟨10.3389/fmicb.2012.00285⟩
Article dans une revue hal-00815833v1
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Picophytoplankton biomass distribution in the global ocean

E. T. Buitenhuis , W. K. W. Li , Daniel Vaulot , M. W. Lomas , M. R. Landry
Earth System Science Data, 2012, 4 (1), pp.201-242. ⟨10.5194/essd-4-37-2012⟩
Article dans une revue hal-00939662v1

Phycoerythrin-specific bilin lyase-isomerase controls blue-green chromatic acclimation in marine Synechococcus.

Animesh Shukla , Avijit Biswas , Nicolas Blot , Frédéric Partensky , Jonathan A Karty
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (49), pp.20136-41. ⟨10.1073/pnas.1211777109⟩
Article dans une revue hal-01071892v1
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CyanoLyase: a database of phycobilin lyase sequences, motifs and functions

Anthony Bretaudeau , François Coste , Florian Humily , Laurence Garczarek , Gildas Le Corguillé
Nucleic Acids Research, 2012, pp.6. ⟨10.1093/nar/gks1091⟩
Article dans une revue hal-01094087v1

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis

Mohamed S. Donia , W. Florian Fricke , Frédéric Partensky , James Cox , Sherif I. Elshahawi
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (51), pp.E1423-E1432. ⟨10.1073/pnas.1111712108⟩
Article dans une revue hal-01218508v1
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Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?

Daniella Mella-Flores , S. Mazard , Florian Humily , Frédéric Partensky , Frédéric Mahé
Biogeosciences, 2011, 8 (9), pp.2785-2804. ⟨10.5194/bg-8-2785-2011⟩
Article dans une revue hal-01218507v1

Prochlorococcus: Advantages and Limits of Minimalism

Frédéric Partensky , Laurence Garczarek
Annual Review of Marine Science, 2010, Annual Review of Marine Science, 2, pp.305-331. ⟨10.1146/annurev-marine-120308-081034⟩
Article dans une revue hal-01218511v1

Microbial community genomics in eastern Mediterranean Sea surface waters

Roi Feingersch , Marcelino T. Suzuki , Michael Shmoish , Itai Sharon , Gazalah Sabehi
The International Society of Microbiologial Ecology Journal, 2010, 4 (1), pp.78-87. ⟨10.1038/ismej.2009.92⟩
Article dans une revue hal-01218512v1
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Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511.

Christian Kolowrat , Frédéric Partensky , Daniella Mella-Flores , Gildas Le Corguillé , Christophe Boutte
BMC Microbiology, 2010, 10, pp.204. ⟨10.1186/1471-2180-10-204⟩
Article dans une revue hal-00529495v1

Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.

Nicolas Blot , Xian-Jun Wu , Jean-Claude Thomas , Juan Zhang , Laurence Garczarek
Journal of Biological Chemistry, 2009, 284 (14), pp.9290-8. ⟨10.1074/jbc.M809784200⟩
Article dans une revue hal-00529452v1

Photosystem I gene cassettes are present in marine virus genomes

Itai Sharon , Ariella Alperovitch , Forest Rohwer , Matthew Haynes , Fabian Glaser
Nature, 2009, 461 (7261), pp.258-262. ⟨10.1038/nature08284⟩
Article dans une revue hal-01218513v1

Ecological genomics of marine Picocyanobacteria.

David J. Scanlan , Martin Ostrowski , Sophie Mazard , Alexis Dufresne , Laurence Garczarek
Microbiology and Molecular Biology Reviews, 2009, 73 (2), pp.249-299. ⟨10.1128/MMBR.00035-08⟩
Article dans une revue hal-00406529v1
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Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

Alexis Dufresne , Martin Ostrowski , David J. Scanlan , Sophie Mazard , Brian P. Palenik
Genome Biology, 2008, 9 (5), pp.R90. ⟨10.1186/gb-2008-9-5-r90⟩
Article dans une revue hal-00338634v1

High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean sea in summers.

Laurence Garczarek , Alexis Dufresne , Sylvie Rousvoal , Nyree J. West , Sophie Mazard
FEMS Microbiology Ecology, 2007, 60 (2), pp.189-206. ⟨10.1111/j.1574-6941.2007.00297.x⟩
Article dans une revue hal-00476860v1
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Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study

Christophe Six , Jean-Claude Thomas , Laurence Garczarek , Martin Ostrowski , Alexis Dufresne
Genome Biology, 2007, 8 (12), pp.R259. ⟨10.1186/gb-2007-8-12-r259⟩
Article dans une revue hal-00338622v1

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Evelyne Derelle , Conchita Ferraz , Stephane Rombauts , Pierre Rouzé , Alexandra Z Worden
Proceedings of the National Academy of Sciences of the United States of America, 2006, 103 (31), pp.11647-52. ⟨10.1073/pnas.0604795103⟩
Article dans une revue hal-00164247v1

Two Novel Phycoerythrin-Associated Linker Proteins in the Marine Cyanobacterium Synechococcus sp. Strain WH8102

Christophe Six , Jean-Claude Thomas , Laurent Thion , Yves Lemoine , Frank Zal
Journal of Bacteriology, 2005, 187 (5), pp.1685-1694. ⟨10.1128/JB.187.5.1685-1694.2005⟩
Article dans une revue hal-03924512v1

New Insights into the Nature and Phylogeny of Prasinophyte Antenna Proteins: Ostreococcus tauri, a Case Study

Christophe Six , Alexandra Worden , Francisco Rodríguez , Hervé Moreau , Frédéric Partensky
Molecular Biology and Evolution, 2005, 22 (11), pp.2217-2230. ⟨10.1093/molbev/msi220⟩
Article dans une revue hal-03924549v1

The Roscoff Culture Collection (RCC): a collection dedicated to marine picoplankton

D. Vaulot , F. Le Gall , D. Marie , L. Guillou , F. Partensky
Nova Hedwigia, 2004, 79 (1-2), pp.49-70
Article dans une revue hal-01663376v1

Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem.

T. S. Bibby , I. Mary , J. Nield , Frédéric Partensky , J. Barber
Nature, 2003, 424 (6952), pp.1051-4. ⟨10.1038/nature01933⟩
Article dans une revue hal-00529710v1

Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511.

J. Holtzendorff , Frédéric Partensky , Stéphanie Jacquet , Flavienne Bruyant , Dominique Marie
Journal of Bacteriology, 2001, 183 (3), pp.915-20. ⟨10.1128/JB.183.3.915-920.2001⟩
Article dans une revue hal-00529713v1
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Diel patterns of growth and division in marine picoplankton in culture

Stéphan Jacquet , Frédéric Partensky , Jean-François Lennon , Daniel Vaulot
Journal of Phycology, 2001, 37 (3), pp.357-369. ⟨10.1046/j.1529-8817.2001.037003357.x⟩
Article dans une revue hal-03163409v1

Differential expression of antenna and core genes in Prochlorococcus PCC 9511 (Oxyphotobacteria) grown under a modulated light-dark cycle.

Laurence Garczarek , Frédéric Partensky , H. Irlbacher , J. Holtzendorff , M. Babin
Environmental Microbiology, 2001, 3 (3), pp.168-75
Article dans une revue hal-00529712v1

An axenic cyclostat of Prochlorococcus PCC 9511 with a simulator of natural light regimes

Flavienne Bruyant , Marcel Babin , A. Sciandra , Dominique Marie , B. Genty
Journal of Applied Phycology, 2001, 13 (2), pp.135 - 142. ⟨10.1023/A:1011144310988⟩
Article dans une revue hal-01893870v1

Cell-Cycle Distributions of Prochlorophytes in the North-Western Mediterranean-Sea

D. Vaulot , F. Partensky
Deep-sea research. Part A, Oceanographic research papers, 1992, 39 (5A), pp.727-742
Article dans une revue hal-01663432v1

A simple method to preserve oceanic phytoplankton for flow cytometric analyses

D. Vaulot , C. Courties , F. Partensky
Cytometry, 1989, 10 (5), pp.629-35
Article dans une revue hal-01663252v1
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Marine cyanobacteria

Frédéric Partensky , Wolfgang Hess , Laurence Garczarek
Lucas J. Stal; Mariana Silvia Cretoiu. The Marine Microbiome, 3, Springer International Publishing, pp.103-157, 2022, The Microbiomes of Humans, Animals, Plants, and the Environment, 978-3-030-90383-1. ⟨10.1007/978-3-030-90383-1_3⟩
Chapitre d'ouvrage hal-03971447v1

Origin and importance of picoplanktonic DMSP

M. Corn , S. Belviso , F. Partensky , N. Simon , U. Christaki
Ronald P. Kiene; Pieter T. Visscher; Maureen D. Keller; Gunter O. Kirst. Biological and Environmental Chemistry of DMSP and Related Sulfonium Compounds, Springer US, pp.191-201, 1996, 978-1-4613-0377-0. ⟨10.1007/978-1-4613-0377-0_17⟩
Chapitre d'ouvrage hal-03608212v1