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Visualizing conflicting evolutionary hypotheses in large collections of trees: using consensus networks to study the origins of placentals and hexapods.

 Barbara Holland , Frédéric Delsuc , Vincent Moulton
Systematic Biology, 2005, 54 (1), pp.66-76. ⟨10.1080/10635150590906055⟩
Article dans une revue halsde-00193050v1
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Genome-scale phylogeny and the detection of systematic biases.

 Matthew J Phillips , Frédéric Delsuc , David Penny
Molecular Biology and Evolution, 2004, 21 (7), pp.1455-8. ⟨10.1093/molbev/msh137⟩
Article dans une revue halsde-00193019v1
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Metagenomics uncovers dietary adaptations for chitin digestion in the gut microbiota of convergent myrmecophagous mammals

 Sophie Teullet , Marie-Ka Tilak , Amandine Magdeleine , Roxane Schaub , Nora Weyer , et al.
mSystems, In press, pp.e0038823. ⟨10.1128/msystems.00388-23⟩
Article dans une revue hal-04251741v1
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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox

 Rémi Allio , Marie-Ka Tilak , Celine Scornavacca , Nico L Avenant , Andrew C Kitchener , et al.
eLife, 2021, 10, ⟨10.7554/eLife.63167⟩
Article dans une revue hal-03147106v1
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MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

 Rémi Allio , Alex Schomaker‐bastos , Jonathan Romiguier , Francisco Prosdocimi , Benoit Nabholz , et al.
Molecular Ecology Resources, 2020, 20, pp.892-905. ⟨10.1111/1755-0998.13160⟩
Article dans une revue hal-02869919v1
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Genomic evidence for the parallel regression of melatonin synthesis and signaling pathways in placental mammals

 Christopher Emerling , Mark Springer , John Gatesy , Zachary Jones , Deana Hamilton , et al.
Open Research Europe, 2021, 1, pp.75. ⟨10.12688/openreseurope.13795.2⟩
Article dans une revue hal-03765554v1
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Molecular evidence for hybridisation between the two living species of South American ratites: potential conservation implications

 Frédéric Delsuc , Mariella Superina , Guillermo Ferraris , Marie-Ka Tilak , Emmanuel J.P. Douzery
Conservation Genetics, 2007, 8, pp.503-507. ⟨10.1007/s10592-006-9179-9⟩
Article dans une revue halsde-00315516v1
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Conserved features and evolutionary shifts of the EDA signaling pathway involved in vertebrate skin appendage development.

 Sophie Pantalacci , Arnaud Chaumot , Gérard Benoît , Alexa Sadier , Frédéric Delsuc , et al.
Molecular Biology and Evolution, 2008, 25 (5), pp.912-28. ⟨10.1093/molbev/msn038⟩
Article dans une revue halsde-00315537v1
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Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

 Se Jin Song , Jon G Sanders , Frédéric Delsuc , Jessica Metcalf , Katherine Amato , et al.
mBio, 2020, 11 (1), ⟨10.1128/mBio⟩
Article dans une revue hal-02869929v1
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The role of the Neotropics as a source of world tetrapod biodiversity

 Andrea Meseguer , Pierre-Olivier Antoine , Antoine Fouquet , Frédéric Delsuc , Fabien F. Condamine
Global Ecology and Biogeography, 2020, 29 (9), pp.1565-1578. ⟨10.1111/geb.13141⟩
Article dans une revue hal-03006032v1
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Estimating maximum likelihood phylogenies with PhyML

 Stéphane Guindon , Frédéric Delsuc , Jean-François Dufayard , Olivier Gascuel
David Posada. Bioinformatics for DNA Sequence Analysis, 537, Springer Protocols, pp.113-137, 2009, Methods in Molecular Biology, ⟨10.1007/978-1-59745-251-9_6⟩
Chapitre d'ouvrage lirmm-00511830v1
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Les horloges moléculaires à l'heure de la génomique [Molecular dating in the genomic era]

 Emmanuel J.P. Douzery , Frédéric Delsuc , Herve Philippe
Médecine/Sciences, 2006, 22 (4), pp.374-80. ⟨10.1051/medsci/2006224374⟩
Article dans une revue halsde-00315396v1
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Skull shape variation in extant pangolins (Pholidota: Manidae): allometric patterns and systematic implications

 Sérgio Ferreira-Cardoso , Guillaume Billet , Philippe Gaubert , Frédéric Delsuc , Lionel Hautier
Zoological Journal of the Linnean Society, 2019, 188, pp.255 - 275. ⟨10.1093/zoolinnean/zlz096⟩
Article dans une revue hal-02869913v1
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Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

 France Denoeud , Simon Henriet , Sutada Mungpakdee , Jean-Marc Aury , Corinne da Silva , et al.
Science, 2010, 330 (6009), pp.1381-1385. ⟨10.1126/science.1194167⟩
Article dans une revue halsde-00544648v1
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The hidden anatomy of paranasal sinuses reveals biogeographically distinct morphotypes in the nine-banded armadillo (Dasypus novemcinctus)

 Guillaume Billet , Lionel Hautier , Benoit de Thoisy , Frédéric Delsuc
PeerJ, 2017, 5, pp.e3593. ⟨10.7717/peerj.3593⟩
Article dans une revue hal-01618041v1

NEOTROPICAL XENARTHRANS: a data set of occurrence of xenarthran species in the Neotropics

 Paloma Marques Santos , Adriana Bocchiglieri , Adriano Garcia Chiarello , Adriano Pereira Paglia , Adryelle Moreira , et al.
Ecology, 2019, 100 (7), ⟨10.1002/ecy.2663⟩
Article dans une revue hal-03097095v1
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Les méthodes probabilistes en phylogénie moléculaire: (1) Les modèles d'évolution des séquences et le maximum de vraisemblance

 Frédéric Delsuc , Emmanuel J.P. Douzery
Biosystema, 2004, 22, pp.59-74
Article dans une revue halsde-00193036v1

ORTHOMAM: a database of candidate orthologous makers for mammalian phylogenetics

 Vincent Ranwez , Frédéric Delsuc , Sylvie Ranwez , Marie-Ka Tilak , Emmanuel J.P. Douzery
EVOLUTION 2007, Jul 2007, Christchurch, New Zealand
Communication dans un congrès hal-00353732v1
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Fossil rhabdoviral sequences integrated into arthropod genomes: ontogeny, evolution, and potential functionality.

 Philippe Fort , Aurélie Albertini , Aurélie Van-Hua , Arnaud Berthomieu , Stéphane Roche , et al.
Molecular Biology and Evolution, 2012, 29 (1), pp.381-90. ⟨10.1093/molbev/msr226⟩
Article dans une revue hal-00649757v1
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Aligning Protein-Coding Nucleotide Sequences with MACSE

 Vincent Ranwez , Nathalie Chantret , Frédéric Delsuc
Methods in Molecular Biology vol. 2231: Multiple Sequence Alignment., 2231, pp.51-70, 2021, ⟨10.1007/978-1-0716-1036-7_4⟩
Chapitre d'ouvrage hal-03099847v1
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Making sense of vertebrate sirtuin genes

 Frédéric Delsuc
2022, pp.100151. ⟨10.24072/pci.evolbiol.100151⟩
Autre publication scientifique hal-03791705v1
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Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (armadillos, anteaters, and sloths).

 Maren Möller-Krull , Frédéric Delsuc , Gennady Churakov , Claudia Marker , Mariella Superina , et al.
Molecular Biology and Evolution, 2007, 24 (11), pp.2573-82. ⟨10.1093/molbev/msm201⟩
Article dans une revue halsde-00315522v1
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Ontogenetic and static allometry in the skull and cranial units of nine-banded armadillos (Cingulata: Dasypodidae: Dasypus novemcinctus)

 Kévin Le Verger , Lionel Hautier , Jérémie Bardin , Sylvain Gerber , Frédéric Delsuc , et al.
Biological Journal of the Linnean Society, 2020, 131 (3), pp.673-698. ⟨10.1093/biolinnean/blaa083⟩
Article dans une revue hal-02994330v1
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Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans

 Gillian C Gibb , Fabien Condamine , Melanie Kuch , Jacob Enk , Nadia Moraes-Barros , et al.
Molecular Biology and Evolution, 2016, 33 (3), pp.621 - 642. ⟨10.1093/molbev/msv250⟩
Article dans une revue hal-01879331v1

Convergence of gut microbiomes in myrmecophagous mammals

 Frédéric Delsuc , Jessica Metcalf , Laura Wegener Parfrey , Se Jin Song , Antonio González , et al.
Molecular Ecology, 2014, 23 (6), pp.1301-1317. ⟨10.1111/mec.12501⟩
Article dans une revue hal-03162060v1
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Evolution of Proteasome Regulators in Eukaryotes

 Philippe Fort , Andrey V. Kajava , Frédéric Delsuc , Olivier Coux
Genome Biology and Evolution, 2015, 7 (5), pp.1363--1379. ⟨10.1093/gbe/evv068⟩
Article dans une revue hal-01883482v1

Pervasive cranial allometry at different anatomical scales and variational levels in extant armadillos

 Kévin Le Verger , Lionel Hautier , Sylvain Gerber , Jérémie Bardin , Frédéric Delsuc , et al.
Evolution - International Journal of Organic Evolution, 2023, ⟨10.1093/evolut/qpad214⟩
Article dans une revue hal-04459935v1
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Comparative transcriptomics reveals divergent paths of chitinase evolution underlying dietary convergence in ant-eating mammals

 Rémi Allio , Sophie Teullet , Dave Lutgen , Amandine Magdeleine , Rachid Koual , et al.
2023
Pré-publication, Document de travail hal-04251886v1
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Resolving the root of the avian mitogenomic tree by breaking up long branches.

 Kerryn E Slack , Frédéric Delsuc , Patricia A Mclenachan , Ulfur Arnason , David Penny
Molecular Phylogenetics and Evolution, 2007, 42 (1), pp.1-13. ⟨10.1016/j.ympev.2006.06.002⟩
Article dans une revue halsde-00315505v1
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PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets

 Aurore Comte , Théo Tricou , Eric Tannier , Julien Joseph , Aurélie Siberchicot , et al.
Molecular Biology and Evolution, 2023, 40 (11), pp.msad234. ⟨10.1093/molbev/msad234⟩
Article dans une revue hal-03995366v3
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