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Number of documents

37

François Moreews - Publications HAL


Journal articles14 documents

  • François Moreews, Hugo Simon, Anne Siegel, Florence Gondret, Emmanuelle Becker. PAX2GRAPHML: a Python library for large-scale regulation network analysis using BIOPAX. Bioinformatics, Oxford University Press (OUP), In press, pp.btab441. ⟨10.1093/bioinformatics/btab441⟩. ⟨hal-03265223⟩
  • Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, et al.. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Research, Oxford University Press, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩. ⟨hal-01146849⟩
  • Leslie Angulo, Catherine Guyader-Joly, Sylvain Auclair, Christelle Hennequet-Antier, Pascal Papillier, et al.. An integrated approach to bovine oocyte quality: from phenotype to genes. Reproduction, Fertility and Development, CSIRO Publishing, 2015, 28 (9), ⟨10.1071/RD14353⟩. ⟨hal-01194139⟩
  • François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le Bras, Cyril Monjeaud, et al.. BioShaDock: a community driven bioinformatics shared Docker-based tools registry. F1000Research, Faculty of 1000, 2015, ⟨10.12688/f1000research.7536.1⟩. ⟨hal-01243520⟩
  • Cathy Charlier, Jérôme Montfort, Olivier Chabrol, Daphné Brisard, Thuy Thao Vi Nguyen, et al.. Oocyte-somatic cells interactions, lessons from evolution.. BMC Genomics, BioMed Central, 2012, 13 (1), pp.560. ⟨10.1186/1471-2164-13-560⟩. ⟨hal-00753310⟩
  • Aurélie Le Cam, Julien Bobe, Olivier Bouchez, Cédric Cabeau, Olivier Kah, et al.. Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach. Gene, Elsevier, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩. ⟨hal-01205069⟩
  • François Moreews, Gaelle Rauffet, Patrice Dehais, Christophe Klopp. SigReannot-mart: a query environment for expression microarray probe re-annotations.. Database - The journal of Biological Databases and Curation, Oxford University Press, 2011, 2011, pp.bar025. ⟨10.1093/database/bar025⟩. ⟨inria-00638684⟩
  • Jonathan M. Guberman, J. Ai, O. Arnaiz, Baran Joachim, Andrew Blake, et al.. BioMart Central Portal: an open database network for the biological community. Database - The journal of Biological Databases and Curation, Oxford University Press, 2011, pp.bar041. ⟨10.1093/database/bar041⟩. ⟨inria-00638749⟩
  • Casel Pierrot, François Moreews, Christophe Klopp. sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.. BMC Proceedings, BioMed Central, 2009, 3 (4), pp.1-5. ⟨10.1186/1753-6561-3-S4-S3⟩. ⟨inria-00435746⟩
  • Carito Guziolowski, Annabel Bourdé, François Moreews, Anne Siegel. BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks. BMC Genomics, BioMed Central, 2009, 26 (10), pp.244. ⟨10.1186/1471-2164-10-244⟩. ⟨inria-00429804⟩
  • Elodie Fleury, Arnaud Huvet, Christophe Lelong, Julien de Lorgeril, Viviane Boulo, et al.. Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase. BMC Genomics, BioMed Central, 2009, 10 (341), pp.341. ⟨10.1186/1471-2164-10-341⟩. ⟨inria-00435769⟩
  • Colette Désert, Michel Jacques Duclos, Pierre Blavy, Frédéric Lecerf, François Moreews, et al.. Transcriptome profiling of the feeding-to-fasting transition in chicken liver.. BMC Genomics, BioMed Central, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩. ⟨hal-00729919⟩
  • Zsofia Kote-Jarai, Lucy Matthews, Ana Osorio, Susan Shanley, Ian Giddings, et al.. Accurate prediction of BRCA1 and BRCA2 heterozygous genotype using expression profiling after induced DNA damage.. Clinical Cancer Research, American Association for Cancer Research, 2006, Clin Cancer Res. 2006 Jul 1;12(13):3896-901. ⟨inria-00180301⟩
  • Cynthia Alland, François Moreews, D. Boens, M. Carpentier, S. Chiusa, et al.. RPBS: a web resource for structural bioinformatics. Nucleic Acids Research, Oxford University Press, 2005, Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W44-9.Click here to read. ⟨inria-00180478⟩

Conference papers19 documents

  • François Moreews, Olivier Sallou, Olivier Collin. An application suite based on the IFB Container as a Service platform. ECCB 2016 (Elixir Talks) , ISCB, Sep 2016, Den Haag, Netherlands. ⟨hal-01394295⟩
  • François Moreews, Olivier Sallou, Yvan Le Bras, Grosjean Marie, Cyril Monjeaud, et al.. A curated Domain centric shared Docker registry linked to the Galaxy toolshed. Galaxy Community Conference 2015, Jul 2015, Norwich, United Kingdom. ⟨hal-01160514⟩
  • François Moreews, Yvan Le Bras, Olivier Dameron, Cyril Monjeaud, Olivier Collin. Integrating GALAXY workflows in a metadata management environment. Galaxy Community Conference, Jul 2014, Baltimore, United States. ⟨hal-01093058⟩
  • François Moreews, Jonathan Piat, Olivier Sallou. OBIWEE : an open source bioinformatics cloud environment. BOSC 2011 - 12th Annual Bioinformatics Open Source Conference, Jul 2011, Vienne, Austria. ⟨inria-00638715⟩
  • Jonathan Piat, François Moreews, Olivier Collin, Dominique Lavenier, Alexandre Cornu. SLICEE: A Service oriented middleware for intensive scientific computation. SERVICES 2011, Jul 2011, WASHINGTON DC, United States. ⟨inria-00638694⟩
  • Pierre Blavy, Florence Gondret, Sven Thiele, Carito Guziolowski, Sandrine Lagarrigue, et al.. A new method for modeling reactions and regulations to analyze high-throughout data. 4. International Symposium on Animal Functional Genomics, Sorcha De Gras; Sorcha De Gras, Oct 2011, Dublin, Ireland. ⟨hal-02748096⟩
  • Cathy Charlier, Jérôme Montfort, Olivier Chabrol, François Moreews, M. Salhab, et al.. Oocyte-Somatic Cells Interactions, Lessons from Evolution. VIIIe Colloque Agenae / Genanimal, Nov 2010, Bordeaux, France. ⟨inria-00540830⟩
  • Philippe Picouet, Z. Doughi, Loraine Brillet, Erwan Corre, Christophe Caron, et al.. BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques. JOBIM, Sep 2010, Montpellier, France. ⟨inria-00540815⟩
  • François Moreews. A framework for building reliable distributed bioinformatics service repositories. ICWS 2009 International Conference on Web Services, Jul 2009, Los Angeles, United States. ⟨10.1109/ICWS.2009.143⟩. ⟨inria-00435752⟩
  • François Moreews. QBIOS: driving toward a trusted distributed bioinformatics service infrastructure. ISMB 2009 - International Conference On Intelligent Systems for Molecular Biology, Jun 2009, Stockholm, Sweden. ⟨inria-00435755⟩
  • C. Klopp, François Moreews, Marc Aubry, Sandrine Lagarrigue. Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomics. Plant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States. ⟨hal-00729110⟩
  • Christophe Klopp, François Moreews, Michel Aubry, Sandrine Lagarrigue. Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomics.. Plant & Animal Genomes, XVI Conference, 2008, Inconnu, pp.Inconnu. ⟨hal-02820463⟩
  • Christophe Klopp, François Moreews, Marc Aubry, Sandrine Lagarrigue. Contribution To The Annotations Of The Chicken 20K Oligo Microarray Of ARK-Genomics. International Plant & Animal Genomes XVI Conference, Jan 2008, San Diego, United States. ⟨inria-00329915⟩
  • Colette Désert, P. Blavy, François Moreews, Michel Jacques Duclos, P. Le Roy, et al.. Transcriptome profiling of feeding-to-fasting transition in chicken liver using a chicken 20K oligo microarray. Plant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States. ⟨hal-00729810⟩
  • Colette Désert, Pierre Blavy, Frédéric Lecerf, Michel Jacques Duclos, François Moreews, et al.. Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02757873⟩
  • Colette Désert, Pierre Blavy, François Moreews, Michel Jacques Duclos, Pascale Le Roy, et al.. Transcriptome Profiling Of Feeding-To-Fasting Transition In Chicken Liver Using A Chicken 20K Oligo Microarray. International Plant & Animal Genomes XVI Conference, Jan 2008, San Diego, United States. ⟨inria-00329926⟩
  • François Moreews. GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus. ISMB 2008, The International Society for Computational Biology, Jul 2008, Toronto, Canada. ⟨inria-00329898⟩
  • Marc Aubry, Colette Désert, P. Blavy, Frédéric Lecerf, Michel Jacques Duclos, et al.. Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France. ⟨hal-00729786⟩
  • Marc Wessner, Martin Senger, Franck Samson, Philippe Picouet, François Moreews, et al.. BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network. Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France. ⟨inria-00327528⟩

Poster communications2 documents

  • Thomas Alain Darde, François Moreews, Yvan Le Bras, Cyril Monjeaud, Frédéric Chalmel. Yet another Galaxy Genome viewer. GCC, Jul 2015, Norwich, United Kingdom. ⟨hal-02445072⟩
  • Colette Désert, Pierre Blavy, François Moreews, Michel Jacques Duclos, Pascale Le Roy, et al.. Transcriptome profiling of feeding-to-fasting transition in chicken liver using a chicken 20K oligo microarray.. Plant & Animal Genomes, XVI Conference, Jan 2008, Inconnu, 2008. ⟨hal-02820065⟩

Preprints, Working Papers, ...1 document

  • François Moreews, Dominique Lavenier. Seamless Coarse Grained Parallelism Integration in Intensive Bioinformatics Workflows. 2016. ⟨hal-00908842⟩

Theses1 document

  • François Moreews. Concevoir et partager des workflows d’analyse de données : application aux traitements intensifs en bioinformatique. Bio-informatique [q-bio.QM]. Université Rennes 1, 2015. Français. ⟨NNT : 2015REN1S089⟩. ⟨tel-01308297v2⟩