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Phydbac “Gene Function Predictor” : a gene annotation tool based on genomic context analysis
Francois Enault
,
Karsten Suhre
,
Jean-Michel Claverie
Article dans une revue
hal-01624056v1
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Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis
F. Enault
,
K. Suhre
,
O. Poirot
,
Chantal Abergel
,
J.-M. Claverie
Article dans une revue
hal-01624057v1
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WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs
Clovis Galiez
,
Matthias Siebert
,
Francois Enault
,
Jonathan Vincent
,
Johannes Söding
,
et al.
Article dans une revue
hal-02088265v1
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Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in lakes
D. Debroas
,
F. Enault
,
Isabelle Jouan-Dufournel
,
G. Bronner
,
Jean-François Humbert
Frans J. de Bruijn. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, Jon Wiley and Sons Publishers, pp.287-293, 2011
Chapitre d'ouvrage
bioemco-00640523v1
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Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
Evelien M. Adriaenssens
,
Johannes Wittmann
,
Jens H. Kuhn
,
Dann Turner
,
Matthew Sullivan
,
et al.
Article dans une revue
pasteur-01977346v1
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Minimum Information about an Uncultivated Virus Genome (MIUViG)
Simon Roux
,
Evelien M. Adriaenssens
,
Bas E. Dutilh
,
Eugene V. Koonin
,
Andrew M. Kropinski
,
et al.
Article dans une revue
pasteur-01977322v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics
Vuong Quoc Hoang Ngo
,
François Enault
,
Cédric Midoux
,
Mahendra Mariadassou
,
Olivier Chapleur
,
et al.
ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland.
Poster de conférence
hal-04359643v1
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Metavir: a web server dedicated to virome analysis.
Simon Roux
,
Michaël Faubladier
,
Antoine Mahul
,
Nils Paulhe
,
Aurélien Bernard
,
et al.
Article dans une revue
hal-00841495v1
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VirSorter: mining viral signal from microbial genomic data.
Simon Roux
,
Francois Enault
,
Bonnie L Hurwitz
,
Matthew B Sullivan
Article dans une revue
hal-01557667v1
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Transposable Prophages in Leptospira: An Ancient, Now Diverse, Group Predominant in Causative Agents of Weil’s Disease
Eric Olo Ndela
,
François Enault
,
Ariane Toussaint
Article dans une revue
hal-03925931v1
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Assessing the diversity and specificity of two freshwater viral communities through metagenomics.
Simon Roux
,
François Enault
,
Agnès Robin
,
Viviane Ravet
,
Sébastien Personnic
,
et al.
Article dans une revue
hal-00819334v1
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Biogeographic patterns of aerobic anoxygenic phototrophic bacteria reveal an ecological consistency of phylogenetic clades in different oceanic biomes
Anne-Catherine Lehours
,
Francois Enault
,
Dominique Boeuf
,
Christian Jeanthon
Article dans une revue
hal-01757822v1
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Discovery of High Abundances of Aster-Like Nanoparticles in Pelagic Environments: Characterization and Dynamics
Jonathan Colombet
,
Hermine Billard
,
Bernard Viguès
,
Stephanie Balor
,
Christelle Boulé
,
et al.
Article dans une revue
hal-02317473v1
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Alvira: comparative genomics of viral strains.
François Enault
,
Romain Fremez
,
Eric Baranowski
,
Thomas Faraut
Bioinformatics, 2007, 23, pp.2178-2179
Article dans une revue
hal-02654862v1
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Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.
Evelien M Adriaenssens
,
Mart Krupovic
,
Petar Knezevic
,
Hans-Wolfgang Ackermann
,
Jakub Barylski
,
et al.
Article dans une revue
hal-01557689v1
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Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in lakes
D. Debroas
,
F. Enault
,
I. Jouan-Dufournel
,
Gisèle Bronner
,
Jean Francois Humbert
Handbook of molecular microbial ecology II: Metagenomics in different habitats, Wiley-Blackwell, 2011, 978-0-470-64719-6
Chapitre d'ouvrage
hal-02806048v1
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Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses.
F Enault
,
A Briet
,
L Bouteille
,
Stéphane Roux
,
Mb Sullivan
,
et al.
Article dans une revue
hal-01557484v1
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Mieux connaître les virus présents sur Terre grâce aux métagénomes
Éric Olo Ndela
,
Louis-Marie Cobigo
,
Simon Roux
,
François Enault
Article dans une revue
hal-03897510v1
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Alvira: comparative genomics of viral strains.
François Enault
,
Romain Fremez
,
Eric Baranowski
,
Thomas Faraut
Article dans une revue
hal-00535599v1
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Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages
Simon Roux
,
François Enault
,
Viviane Ravet
,
Olivier Pereira
,
Matthew B. Sullivan
Article dans une revue
hal-01254665v1
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Phydbac (phylogenomic display of bacterial genes): An interactive resource for the annotation of bacterial genomes.
François Enault
,
Karsten Suhre
,
Olivier Poirot
,
Chantal Abergel
,
Jean-Michel Claverie
Nucleic Acids Research, 2003, pp.3720-2
Article dans une revue
hal-01624058v1
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes
Vuong Quoc Hoang Ngo
,
Cédric Midoux
,
Olivier Rué
,
Mahendra Mariadassou
,
Violette Da Cunha
,
et al.
Phages in Grenoble, Oct 2019, Grenoble, France.
Poster de conférence
hal-04360160v1
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Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages
Jakub Barylski
,
Francois Enault
,
Bas E Dutilh
,
Margo Bp Schuller
,
Robert Edwards
,
et al.
Article dans une revue
hal-02362652v1
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Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.
Simon Roux
,
Mart Krupovic
,
Didier Debroas
,
Patrick Forterre
,
François Enault
Article dans une revue
hal-00932219v1
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Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting
Bashar Ibrahim
,
Ksenia Arkhipova
,
Arno C Andeweg
,
Susana Posada-Céspedes
,
François Enault
,
et al.
Article dans une revue
hal-01964743v1
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Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses.
Simon Roux
,
François Enault
,
Gisèle Bronner
,
Daniel Vaulot
,
Patrick Forterre
,
et al.
Article dans une revue
hal-00881062v1
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Unveiling Crucivirus Diversity by Mining Metagenomic Data
Ignacio de La Higuera
,
George Kasun
,
Ellis Torrance
,
Alyssa Pratt
,
Amberlee Maluenda
,
et al.
Article dans une revue
hal-02996209v1
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Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems.
Simon Roux
,
François Enault
,
Gisèle Bronner
,
Didier Debroas
Article dans une revue
hal-00840983v1
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Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads.
Simon Roux
,
Mart Krupovic
,
Axel Poulet
,
Didier Debroas
,
François Enault
Article dans une revue
hal-00816089v1
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Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.
M Krupovic
,
Be Dutilh
,
Em Adriaenssens
,
J Wittmann
,
Fk Vogensen
,
et al.
Article dans une revue
hal-01557489v1
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