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Selection for infectivity profiles in slow and fast epidemics, and the rise of SARS-CoV-2 variants
François Blanquart
,
Nathanaël Hozé
,
Benjamin John Cowling
,
Florence Débarre
,
Simon Cauchemez
Article dans une revue
hal-03835687v1
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What drives parallel evolution?
Susan Bailey
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François Blanquart
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Thomas Bataillon
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Rees Kassen
Article dans une revue
hal-04053986v1
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Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence
Guilhem Royer
,
Olivier Clermont
,
Julie Marin
,
Bénédicte Condamine
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Sara Dion
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et al.
Article dans une revue
hal-04275628v1
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SARS-CoV-2 viral dynamics in infections with Alpha and Beta variants of concern in the French community
Gina Cosentino
,
Mathieu Bernard
,
Joëvin Ambroise
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Jean-Marc Giannoli
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Jérémie Guedj
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et al.
Article dans une revue
hal-03835698v1
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Fisher to the rescue
François Blanquart
,
Florence Débarre
Autre publication scientifique
hal-02550744v1
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A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance
Peter Czuppon
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Troy Day
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Florence Débarre
,
François Blanquart
Article dans une revue
hal-04275613v1
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Epidemiological dynamics of bacteriocin competition and antibiotic resistance
Sonja Lehtinen
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Nicholas J Croucher
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François Blanquart
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Christophe Fraser
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hal-03835683v1
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Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART
Chenjie Wan
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Nadine Bachmann
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Venelin Mitov
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François Blanquart
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Susana Posada Céspedes
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et al.
Article dans une revue
hal-03066281v1
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A highly virulent variant of HIV-1 circulating in the Netherlands
Chris Wymant
,
Daniela Bezemer
,
François Blanquart
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Luca Ferretti
,
Astrid Gall
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et al.
Article dans une revue
hal-03835688v1
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Genetic determinism of phage-bacteria coevolution in natural populations
Damien Piel
,
Maxime Bruto
,
Yannick Labreuche
,
Francois Blanquart
,
Sabine Chenivesse
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et al.
2021
Pré-publication, Document de travail
hal-03439372v1
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Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load
Lele Zhao
,
Chris Wymant
,
François Blanquart
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Tanya Golubchik
,
Astrid Gall
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et al.
Article dans une revue
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The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France
Julie Marin
,
Olivier Clermont
,
Guilhem Royer
,
Mélanie Mercier-Darty
,
Jean Winoc Decousser
,
et al.
Article dans une revue
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Phylodynamics of SARS-CoV-2 in France, Europe, and the world in 2020
Romain Coppée
,
François Blanquart
,
Aude Jary
,
Valentin Leducq
,
Valentine Marie Ferré
,
et al.
Article dans une revue
hal-04275646v1
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Estimating the global reduction in transmission and rise in detection capacity of the novel coronavirus SARS-CoV-2 in early 2020
Antoine Belloir
,
François Blanquart
Article dans une revue
hal-03439353v1
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The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection
Peter Czuppon
,
Emmanuel Schertzer
,
François Blanquart
,
Florence Débarre
Article dans une revue
hal-03439370v1
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Spread of the Delta variant, vaccine effectiveness against PCR-detected infections and within-host viral load dynamics in the community in France
François Blanquart
,
Clémence Abad
,
Joevin Ambroise
,
Mathieu Bernard
,
Gina Cosentino
,
et al.
2021
Pré-publication, Document de travail
hal-03289443v1
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Early assessment of diffusion and possible expansion of SARS-CoV-2 Lineage 20I/501Y.V1 (B.1.1.7, variant of concern 202012/01) in France, January to March 2021
Alexandre Gaymard
,
Paolo Bosetti
,
Adeline Feri
,
Gregory Destras
,
Vincent Enouf
,
et al.
Article dans une revue
hal-03184264v1
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The effect of habitat choice on evolutionary rescue in subdivided populations
Peter Czuppon
,
François Blanquart
,
Hildegard Uecker
,
Florence Débarre
2020
Pré-publication, Document de travail
hal-03002998v1
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Success of prophylactic antiviral therapy for SARS-CoV-2: predicted critical efficacies and impact of different drug-specific mechanisms of action
Peter Czuppon
,
Florence Débarre
,
Antonio Gonçalves
,
Olivier Tenaillon
,
Alan S Perelson
,
et al.
Article dans une revue
hal-03003001v3
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The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations
Peter Czuppon
,
François Blanquart
,
Hildegard Uecker
,
Florence Débarre
Article dans une revue
hal-03439344v1
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Evolutionary epidemiology models to predict the dynamics of antibiotic resistance
François Blanquart
Article dans une revue
hal-02347501v1
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Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
Sonja Lehtinen
,
François Blanquart
,
Nicholas Croucher
,
Paul Turner
,
Marc Lipsitch
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (5), pp.1075-1080. ⟨10.1073/pnas.1617849114⟩
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Characterization of vaccine-breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community in France
François Blanquart
,
Clémence Abad
,
Joevin Ambroise
,
Mathieu Bernard
,
Gina Cosentino
,
et al.
2021
Pré-publication, Document de travail
hal-03318483v2
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Bottlenecks can constrain and channel evolutionary paths
Jasmine Gamblin
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Sylvain Gandon
,
François Blanquart
,
Amaury Lambert
2022
Pré-publication, Document de travail
hal-03835693v1
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An evolutionary model to predict the frequency of antibiotic resistance under seasonal antibiotic use, and an application to Streptococcus pneumoniae
François Blanquart
,
Sonja Lehtinen
,
Christophe Fraser
Article dans une revue
hal-04053958v1
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Evidence for parasite-mediated selection during short-lasting toxic algal blooms
François Blanquart
,
Myriam Valero
,
Catharina Alves-De-Souza
,
Aliou Dia
,
Frédéric Lepelletier
,
et al.
Article dans une revue
hal-01400173v1
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Factors favouring the evolution of multidrug resistance in bacteria
Eliott Jacopin
,
Sonja Lehtinen
,
Florence Débarre
,
François Blanquart
Article dans une revue
hal-03002992v1
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Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes
Marion Cornelissen
,
Astrid Gall
,
Antoinette van der Kuyl
,
Chris Wymant
,
François Blanquart
,
et al.
Article dans une revue
hal-04053721v1
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Success of Escherichia coli O25b:H4 Sequence Type 131 Clade C Associated with a Decrease in Virulence
Marion Duprilot
,
Alexandra Baron
,
François Blanquart
,
Sara Dion
,
Cassandra Pouget
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et al.
Article dans une revue
hal-03089418v1
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Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver
Chris Wymant
,
François Blanquart
,
Tanya Golubchik
,
Astrid Gall
,
Margreet Bakker
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et al.
Article dans une revue
hal-02347553v1
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