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Growth-Rate Dependent And Nutrient-Specific Gene Expression Resource Allocation In Fission Yeast

 Istvan Kleijn , Amalia Martínez-Segura , François Bertaux , Malika Saint , Holger Kramer , et al.
2021
Pré-publication, Document de travail hal-03261217v1
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External control of microbial populations for bioproduction: A modeling and optimization viewpoint

 François Bertaux , Jakob Ruess , Grégory Batt
Current Opinion in Systems Biology, 2021, 28, pp.100394. ⟨10.1016/j.coisb.2021.100394⟩
Article dans une revue hal-03536479v1
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Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance

 François Bertaux , Szymon Stoma , Dirk Drasdo , Gregory Batt
PLoS Computational Biology, 2014, 10 (10), pp.14. ⟨10.1371/journal.pcbi.1003893.s016⟩
Article dans une revue hal-00942885v2
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A bacterial size law revealed by a coarse-grained model of cell physiology

 François Bertaux , Julius von Kügelgen , Samuel Marguerat , Vahid Shahrezaei
PLoS Computational Biology, 2020, 16 (9), ⟨10.1371/journal.pcbi.1008245⟩
Article dans une revue hal-03152985v1
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Maximizing protein production by keeping cells at optimal secretory stress levels using real-time control approaches

 Sebastián Sosa-Carrillo , Henri Galez , Sara Napolitano , François Bertaux , Gregory Batt
Nature Communications, 2023, 14 (1), pp.3028. ⟨10.1038/s41467-023-38807-9⟩
Article dans une revue hal-03940186v2
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STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification

 Szymon Stoma , Alexandre Donzé , François Bertaux , Oded Maler , Grégory Batt
[Research Report] RR-8121, INRIA. 2012, pp.35
Rapport hal-00750063v1
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System modeling of receptor-induced apoptosis

 François Bertaux , Dirk Drasdo , Gregory Batt
Olivier Micheau. TRAIL, Fas Ligand, TNF and TLR3 in Cancer, 12, 2017, Resistance to Targeted Anti-Cancer Therapeutics, 978-3-319-56804-1
Chapitre d'ouvrage hal-01667015v1

Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway

 Sucheendra K. Palaniappan , François Bertaux , Matthieu Pichené , Eric Fabre , Gregory Batt , et al.
Bioinformatics, 2017, 33 (13), pp.1980 - 1986. ⟨10.1093/bioinformatics/btx095⟩
Article dans une revue hal-01547618v1
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Using single-cell models to predict the functionality of synthetic circuits at the population scale

 Chetan Aditya , François Bertaux , Gregory Batt , Jakob Ruess
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (11), pp.e2114438119. ⟨10.1073/pnas.211443811⟩
Article dans une revue hal-03544044v2
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Enabling reactive microscopy with MicroMator

 Zachary Fox , Steven Fletcher , Achille Fraisse , Chetan Aditya , Sebastián Sosa-Carrillo , et al.
Nature Communications, 2022, 13, pp.2199. ⟨10.1038/s41467-022-29888-z⟩
Article dans une revue hal-03261134v2
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STL-based Analysis of TRAIL-induced Apoptosis Challenges the Notion of Type I/Type II Cell Line Classification

 Szymon Stoma , Alexandre Donzé , François Bertaux , Oded Maler , Gregory Batt
PLoS Computational Biology, 2013, 9 (5), pp.e1003056. ⟨10.1371/journal.pcbi.1003056⟩
Article dans une revue hal-00926593v1
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Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data

 Raphaël Leblois , Pierre Pudlo , Néron Joseph , François Bertaux , Champak Reddy Beeravolu , et al.
Molecular Biology and Evolution, 2014, 31 (10), pp.2805-2823. ⟨10.1093/molbev/msu212⟩
Article dans une revue hal-02087423v1

Model Prediction and Validation of an Order Mechanism Controlling the Spatiotemporal Phenotype of Early Hepatocellular Carcinoma

 Stefan Hoehme , François Bertaux , William Weens , Bettina Grasl-Kraupp , Jan Hengstler , et al.
Bulletin of Mathematical Biology, 2018, 80 (5), pp.1134-1171
Article dans une revue hal-01968844v1
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Cell-based multi-scale modeling for systems and synthetic biology : from stochastic gene expression in single cells to spatially organized cell populations

 François Bertaux
Modeling and Simulation. Université Pierre et Marie Curie - Paris VI, 2016. English. ⟨NNT : 2016PA066101⟩
Thèse tel-01405430v2
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Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight

 François Bertaux , Sebastián Sosa Carrillo , Viktoriia Gross , Achille Fraisse , Chetan Aditya , et al.
Nature Communications, 2022, 13, pp.3363. ⟨10.1038/s41467-022-31033-9⟩
Article dans une revue hal-03744485v2
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Model prediction and validation of an order mechanism controlling the spatio-temporal phenotype of early hepatocellular carcinoma

 François Bertaux , Stefan Hoehme , William Weens , Bettina Grasl-Kraupp , Jan G. Hengstler , et al.
2016
Pré-publication, Document de travail hal-01426629v1

Approximating the dynamics of the Hybrid Stochastic-Deterministic Apoptosis pathway

 Sucheendra K. Palaniappan , François Bertaux , Matthieu Pichene , Eric Fabre , Gregory Batt , et al.
CMSB 2015, 2015, Nantes, France. CMSB 2015, 2015, CMSB 2015
Poster de conférence hal-01245034v1
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