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François Allal - Ifremer - MARBEC


Chargé de recherche à l’Ifremer en génétique et génomique aquacole depuis 2013, jeparticipe à l’ambition de participer de relever le défi de l’amélioration de la durabilité de la pisciculture grâce notamment à la sélection génomique. Une grande part de mes travaux de recherche concerne l’intégration des outils de la génomique moléculaire et de la génomique quantitative pour l’amélioration des caractères de durabilité tels que la résistance aux maladies, l’efficacité alimentaire, les rendements productifs, ou les interactions génotype x environnement, mais aussi le déterminisme du sexe, ou les traits de personnalité chez le bar européen (Dicentrarchus labrax).


Journal articles33 documents

  • Mathieu Besson, Nicky Rombout, Germain Salou, Alain Vergnet, Sophie Cariou, et al.. Potential for genomic selection on feed efficiency in gilthead sea bream (Sparus aurata), based on individual feed conversion ratio, carcass and lipid traits. Aquaculture Reports, 2022, 24, ⟨10.1016/j.aqrep.2022.101132⟩. ⟨hal-03679214⟩
  • Benjamin Geffroy, Manuel Gesto, Frédéric Clota, Johan Aerts, Maria J. Darias, et al.. Parental selection for growth and early-life low stocking density increase the female-to-male ratio in European sea bass. Scientific Reports, Nature Publishing Group, 2021, 11 (1), ⟨10.1038/s41598-021-93116-9⟩. ⟨hal-03360565⟩
  • Ronan Griot, François Allal, Florence Phocas, Sophie Brard-Fudulea, Romain Morvezen, et al.. Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata). Frontiers in Genetics, Frontiers, 2021, 12, ⟨10.3389/fgene.2021.665920⟩. ⟨hal-03360561⟩
  • Sarah Allal, Valentin Rabuel, Charline Gengler, Catherine Douchet, Francois Allal, et al.. Case report of osteomyelitis of the mandible in osteopetrosis and management considerations. International Journal of Surgery Case Reports, Elsevier, 2021, 81, pp.105813. ⟨10.1016/j.ijscr.2021.105813⟩. ⟨hal-03404273⟩
  • Ronan Griot, François Allal, Florence Phocas, Sophie Brard-Fudulea, Romain Morvezen, et al.. Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip. Aquaculture, 2021, 530, pp.735930. ⟨10.1016/j.aquaculture.2020.735930⟩. ⟨hal-03544239⟩
  • Sofie Barsøe, François Allal, Alain Vergnet, Marc Vandeputte, Niels Jørgen Olesen, et al.. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV). Aquaculture Reports, Elsevier, 2021, 19, pp.100621. ⟨10.1016/j.aqrep.2021.100621⟩. ⟨hal-03150815⟩
  • Benjamin Geffroy, Mathieu Besson, Núria Sánchez-Baizán, Frederic Clota, Alexander Goikoetxea, et al.. Unraveling the genotype by environment interaction in a thermosensitive fish with a polygenic sex determination system. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2021, 118 (50), pp.e2112660118. ⟨10.1073/pnas.2112660118⟩. ⟨hal-03485506⟩
  • Pierre Boudry, François Allal, Muhammad L. Aslam, Luca Bargelloni, Tim P. Bean, et al.. Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries. Aquaculture Reports, 2021, 20, pp.100700. ⟨10.1016/j.aqrep.2021.100700⟩. ⟨hal-03411084⟩
  • C. Peñaloza, T. Manousaki, R. Franch, A. Tsakogiannis, A. K. Sonesson, et al.. Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata). Genomics, 2021, 113 (4), pp.2096--2107. ⟨10.1016/j.ygeno.2021.04.038⟩. ⟨hal-03415631⟩
  • Sara Faggion, Marc Vandeputte, Alain Vergnet, Frédéric Clota, Marie-Odile Blanc, et al.. Sex dimorphism in European sea bass (Dicentrarchus labrax L.): New insights into sex-related growth patterns during very early life stages. PLoS ONE, Public Library of Science, 2021, 16 (4), pp.e0239791. ⟨10.1371/journal.pone.0239791⟩. ⟨hal-03206637⟩
  • Charles Rodde, Hugues de Verdal, Marc Vandeputte, François Allal, Julie Nati, et al.. An investigation of links between metabolic rate and feed efficiency in European sea bass Dicentrarchus labrax. Journal of Animal Science, American Society of Animal Science, 2021, 99 (6), pp.1-9. ⟨10.1093/jas/skab152⟩. ⟨hal-03360566⟩
  • Chloe Dambrine, Martin Huret, Mathieu Woillez, Laure Pecquerie, Francois Allal, et al.. Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay - English Channel area. Ecological Modelling, Elsevier, 2020, 423, pp.109007. ⟨10.1016/j.ecolmodel.2020.109007⟩. ⟨hal-02921206⟩
  • Sara Faggion, Pierre Sanchez, Marc Vandeputte, Frédéric Clota, Alain Vergnet, et al.. Evaluation of a European sea bass (Dicentrarchus labrax L.) post-larval tagging method with ultra-small RFID tags. Aquaculture, Elsevier, 2020, 520, pp.734945. ⟨10.1016/j.aquaculture.2020.734945⟩. ⟨hal-03150884⟩
  • Charles Rodde, Hugues de Verdal, Sébastien Lefebvre, Christophe Menniti, Marc Vandeputte, et al.. Variations in isotope incorporation rates and trophic discrimination factors of carbon and nitrogen stable isotopes in scales from three European sea bass (Dicentrarchus labrax) populations. Journal of Experimental Marine Biology and Ecology, Elsevier, 2020, 533, pp.151468. ⟨10.1016/j.jembe.2020.151468⟩. ⟨hal-03097301⟩
  • Charles Rodde, Marc Vandeputte, François Allal, Mathieu Besson, Frédéric Clota, et al.. Population, Temperature and Feeding Rate Effects on Individual Feed Efficiency in European Sea Bass (Dicentrarchus labrax). Frontiers in Marine Science, Frontiers Media, 2020, 7, ⟨10.3389/fmars.2020.578976⟩. ⟨hal-03150873⟩
  • Maud Duranton, François Allal, Sophie Valière, Olivier Bouchez, François Bonhomme, et al.. The contribution of ancient admixture to reproductive isolation between European sea bass lineages. Evolution Letters, Wiley Open Access 2020, 4 (3), pp.226-242. ⟨10.1002/evl3.169⟩. ⟨hal-03065745⟩
  • Marc Vandeputte, Clémence Fraslin, Pierrick Haffray, Anastasia Bestin, François Allal, et al.. How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain. Aquaculture, Elsevier, 2020, 519, pp.734877. ⟨10.1016/j.aquaculture.2019.734877⟩. ⟨hal-03150887⟩
  • Marc Vandeputte, Jérôme Bugeon, Anastasia Bestin, Alexandre Desgranges, Jean-Michel Allamellou, et al.. First evidence of realized selection response on fillet yield in Rainbow trout Oncorhynchus mykiss, Using Sib selection or based on correlated ultrasound measurements. Frontiers in Genetics, Frontiers, 2019, 10, pp.1-13. ⟨10.3389/fgene.2019.01225⟩. ⟨hal-02627462⟩
  • Sara Faggion, Marc Vandeputte, Béatrice Chatain, Pierre-Alexandre Gagnaire, François Allal. Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.. Heredity, 2019, 122 (5), pp.612-621. ⟨10.1038/s41437-018-0157-z⟩. ⟨hal-02395931⟩
  • Mathieu Besson, François Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. Combining Individual Phenotypes of Feed Intake With Genomic Data to Improve Feed Efficiency in Sea Bass. Frontiers in Genetics, Frontiers, 2019, 10, pp.1-14. ⟨10.3389/fgene.2019.00219⟩. ⟨hal-02403255⟩
  • Ronan Griot, Francois Allal, Sophie Brard-Fudulea, Romain Morvezen, Pierrick Haffray, et al.. APIS: An auto-adaptive parentage inference software that tolerates missing parents. Molecular Ecology Resources, Wiley/Blackwell, 2019, pp.1-12. ⟨10.1111/1755-0998.13103⟩. ⟨hal-02434174⟩
  • Marc Vandeputte, P.-A. Gagnaire, F. Allal. The European sea bass: a key marine fish model in the wild and in aquaculture. Animal Genetics, Wiley-Blackwell, 2019, 50 (3), pp.195-206. ⟨10.1111/age.12779⟩. ⟨hal-02395941⟩
  • Dafni Anastasiadi, Marc Vandeputte, Nuria Sanchez-Baizan, Francois Allal, Francesc Piferrer. Dynamic epimarks in sex-related genes predict gonad phenotype in the European sea bass, a fish with mixed genetic and environmental sex determination. Epigenetics, Taylor & Francis, 2018, 13 (9), pp.988-1011. ⟨10.1080/15592294.2018.1529504⟩. ⟨hal-01994184⟩
  • Christos Palaiokostas, Sophie Cariou, Anastasia Bestin, Jean-Sebastien Bruant, Pierrick Haffray, et al.. Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing. Genetics Selection Evolution, BioMed Central, 2018, 50 (1), pp.1-11. ⟨10.1186/s12711-018-0401-2⟩. ⟨hal-01826622⟩
  • Maud Duranton, François Allal, Christelle Fraïsse, Nicolas Bierne, François Bonhomme, et al.. The origin and remolding of genomic islands of differentiation in the European sea bass. Nature Communications, Nature Publishing Group, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩. ⟨hal-01825457⟩
  • Hugues de Verdal, Hans Komen, Edwige Quillet, Béatrice Chatain, François Allal, et al.. Improving feed efficiency in fish using selective breeding: a review. Reviews in Aquaculture, Wiley, 2017, 10 (4), pp.1-19. ⟨10.1111/raq.12202⟩. ⟨hal-01602277⟩
  • Q.K. Doan, Marc Vandeputte, B. Chatain, T. Morin, F. Allal. Viral encephalopathy and retinopathy in aquaculture: a review. Journal of Fish Diseases, Wiley, 2017, 40 (5), pp.717-742. ⟨10.1111/jfd.12541⟩. ⟨hal-01533903⟩
  • Marc Vandeputte, Khaled Horri, François Allal, Sebastien Ferrari, Marie-Odile Vidal, et al.. Does early growth play a role in the sex determination of european SEABASS Dicentrarchus labrax?. Aquaculture, Elsevier, 2017, 472, pp.114. ⟨hal-01929920⟩
  • J.E.J. Hillen, I. Coscia, Marc Vandeputte, K. Herten, B. Hellemans, et al.. Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture, 2017, 479, pp.742-749. ⟨10.1016/j.aquaculture.2017.07.012⟩. ⟨hal-01583182⟩
  • Marc Vandeputte, Antonio Puledda, Anne Sophie Tyran, Anastasia Bestin, Céline Coulombet, et al.. Investigation of morphological predictors of fillet and carcass yield in European sea bass (Dicentrarchus labrax) for application in selective breeding. Aquaculture, Elsevier, 2017, 470, pp.40-49. ⟨10.1016/j.aquaculture.2016.12.014⟩. ⟨hal-01595276⟩
  • Jean-Noël Hubert, François Allal, Caroline Hervet, Monique Ravakarivelo, Zsigmond Jeney, et al.. How could fully scaled carps appear in natural waters in Madagascar?. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2016, 283 (1837), pp.1-8. ⟨10.1098/rspb.2016.0945⟩. ⟨hal-01924181⟩
  • Sebastien Ferrari, Khaled Horri, François Allal, Alain Vergnet, David Benhaim, et al.. Heritability of boldness and hypoxia avoidance in European seabass, Dicentrarchus labrax. PLoS ONE, Public Library of Science, 2016, 11 (12), pp.1-16. ⟨10.1371/journal.pone.0168506⟩. ⟨hal-01602254⟩
  • François Allal, H. Sanou, L. Millet, A. Vaillant, L. Camus-Kulandaivelu, et al.. Past climate changes explain the phylogeography of Vitellaria paradoxa over Africa. Heredity, Nature Publishing Group, 2011, 107 (2), pp.174-186. ⟨10.1038/hdy.2011.112⟩. ⟨hal-02642275⟩

Conference papers55 documents

  • Frédéric Clota, Benjamin Geffroy, Alain Vergnet, Marie-Odile Blanc, Stéphane Lallement, et al.. Late high temperature promotes fast growth and female differentiation in European sea bass Dicentrarchus labrax, while early photoperiod has no effect on either trait. Aquaculture Europe 2021, Oct 2021, Funchal, Portugal. ⟨hal-03360551⟩
  • Anastasia Bestin, Mathieu Besson, Alain Vergnet, François Allal, Frédéric Clota, et al.. Genetic correlations between processing traits and individual feed efficiency in a gilthead sea bream (Sparus aurata) commercial line. Aquaculture Europe 2021, Oct 2021, Funchal, Portugal. ⟨hal-03360548⟩
  • Ronan Griot, François Allal, Florence Phocas, Sophie Brard-Fudulea, Romain Morvezen, et al.. Genome wide association studies revealed one strong effect QTLfor viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax). Aquaculture Europe 2020, Apr 2021, Cork, Ireland. ⟨hal-03198222⟩
  • Sara Faggion, Duranton Maud, Pierre-Alexandre Gagnaire, Marc Vandeputte, François Allal. Genomically assisted reconstruction of the ancestral Dicentrarchus labrax L. Mediterranean lineage. Aquaculture Europe 2021, Oct 2021, Funchal, Portugal. ⟨hal-03360557⟩
  • Sara Faggion, Marc Vandeputte, Alain Vergnet, Frédéric Clota, Marie‐odile Blanc, et al.. Sex dimorphism in European sea bass (Dicentrarchus labrax L.) : new insights into sex-related growth patterns during very early life stages. Aquaculture Europe 2020 online, Apr 2021, Cork, Ireland. ⟨hal-03187478⟩
  • Mathieu Besson, David J Mckenzie, Julie J.H Nati, Salou Germain, Alain Vergnet, et al.. Phenotypic and genomic correlations between feed efficiency and metabolic traits in European sea bass. Aquaculture Europe 2021, Oct 2021, Funchal, Portugal. ⟨hal-03360559⟩
  • François Allal, Mathieu Besson, Bastien Sadoul, François Ruelle, Pegart Mako, et al.. Genomic prediction and genotype-by-temperature interaction of sex tendency in European sea bass.. Aquaculture Europe 2021, Oct 2021, Funchal, Portugal. ⟨hal-03360554⟩
  • Sara Faggion, Maud Duranton, Pierre-Alexandre Gagnaire, Marc Vandeputte, François Allal. Genomically assisted reconstruction of the ancestral Dicentrarchus labrax Mediterranean lineage. 6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain. ⟨hal-03187502⟩
  • Nuria Sanchez-Baizan, Marc Vandeputte, François Allal, Francesc Piferrer. Multigenerational epigenetic inheritance of masculinizing temperatures in the European sea bass. 6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain. ⟨hal-03187504⟩
  • Marc Vandeputte, Jérôme Bugeon, Anastasia Bestin, Alexandre Desgranges, Jean-Michel Allamelou, et al.. Réponse à la sélection sur le rendement de filet chez la truite arc-en-ciel. 6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France. ⟨hal-02734410⟩
  • Marc Vandeputte, Jérôme Bugeon, Anastasia Bestin, Alexandre Desgranges, Sébastien Courant, et al.. Successful realized selection response for fillet yield in rainbow trout Oncorhynchus mykiss. World Aquaculture 2018, European Aquaculture Society (EAS)., Aug 2019, Montpellier, France. ⟨hal-02264916⟩
  • Mathieu Besson, Marc Vandeputte, François Allal, Patrick Prunet, Marie-Laure Bégout, et al.. Accounting for genetic variability in fitness-related traits using a Dynamic Energy Budget model, an example on European Seabass. 6. International Symposium and Thematic School on ‘Dynamic energy Budget theory for metabolic organization’ (DEB2019), Apr 2019, Brest, France. pp.47. ⟨hal-03187437⟩
  • Mathieu Besson, François Allal, Alain Vergnet, Frédéric Clota, Sophie Cariou, et al.. Améliorer l'efficacité alimentaire des poissons en utilisant une nouvelle méthode de phénotypage en aquarium individuel. 6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France. ⟨hal-02264927⟩
  • Marc Vandeputte, Pierrick Haffray, Anastasia Bestin, François Allal, Mathilde Dupont-Nivet. Interaction génotype x aliment: que sait-on, où va-t-on ?. Journée du SFAM, Mar 2019, Montpellier, France. ⟨hal-03187439⟩
  • Anastasia Bestin, Yoannah François, Thierry Morin, Mathilde Dupont-Nivet, Marc Vandeputte, et al.. Intégration de caractères de résistance à cinq pathologies dans les schémas de sélection commerciale de truite, bar et daurade. 6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France. ⟨hal-02264929⟩
  • Nuria Sanchez-Baizan, Dafni Anastasiadi, Marc Vandeputte, François Allal, Francesc Piferrer. Epigenetic inheritance and integration of masculinizing temperatures of the European sea bass (Dicentrarchus labrax). Epigenetic inheritance Symposium, Aug 2019, Zurich, Switzerland. ⟨hal-03187444⟩
  • Marc Vandeputte, Clémence Fraslin, Pierrick Haffray, Anastasia Bestin, François Allal, et al.. How to genetically increase fillet yield in fish: relevant genetic parameters and methods for the estimation of genetic gain. Aquaculture Europe 2019, Oct 2019, Berlin, Germany. ⟨hal-03187446⟩
  • Mathieu Besson, François Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. Estimation of genetic parameters of feed conversion ratio based on individual phenotypes in sea bass. 11th World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand. ⟨hal-03156802⟩
  • Mathieu Besson, François Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. Selective breeding on tolerance to fasting improves feed conversion ratio of sea bass. AQUA 2018, Aug 2018, Montpellier, France. ⟨hal-03187434⟩
  • François Allal, Quoc Khanh Doan, Béatrice Chatain, Alain Vergnet, Pierrick Haffray, et al.. Genome-wide association study and genomic evaluations for resistance to Viral Nervous Necrosis in wild populations of European seabass Dicentrarchus labrax. AQUA 2018, Aug 2018, Montpellier, France. ⟨hal-03187164⟩
  • Christos Palaiokostas, Martin Kocour, Tomáš Veselý, Sophie Cariou, Anastasia Bestin, et al.. Breeding for disease resistance in farmed fish in the era of high-throughput sequencing. 11th World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand. ⟨hal-03156780⟩
  • François Allal, Ronan Griot, Pierre-Alexandre Gagnaire, Romain Morvezen, Sophie Brard, et al.. Des puces pour prédire l’avenir…. Journées du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2018, Montpelllier, France. ⟨hal-03156824⟩
  • Romain Morvezen, Anastasia Bestin, Anne-Sophie Tiriau, Laurane Pallandre, Joelle Cabon, et al.. Heritabilities of resistance to VNN and vibriosis and genetic correlations with production traits and processing yields in two selected commercial lines of the European sea bass Dicentrarchus labrax. 13th International Symposium Genetics in Aquaculture, Jul 2018, Cairns, Australia. ⟨hal-03187102⟩
  • Mathieu Besson, François Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. Genetic improvement of feed conversion ratio in sea bass : new approach based on individual phenotypes and genomic info. Genetics and Breeding in Aquaculture: North meets South, May 2018, Bergen, Norway. ⟨hal-03156894⟩
  • Marc Vandeputte, Jérôme Bugeon, Anastasia Bestin, Alexandre Desgranges, Sebastien Courant, et al.. A first demonstration of realized selection response for fillet yield in fish, in rainbow trout oncorhynchus mykiss. 13. International Symposium for Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia. ⟨hal-02264933⟩
  • Sara Faggion, Marc Vandeputte, Béatrice Chatain, Pierre-Alexandre Gagnaire, François Allal. Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.. AQUA 2018, Aug 2018, Montpellier, France. ⟨hal-03187154⟩
  • Ronan Griot, François Allal, Sophie Brard-Fudulea, Sophie S. Cariou, Pierrick Haffray, et al.. APIS: A new auto-adaptive parentage inference software tolerant to missing parents. 13th International Symposium Genetics in Aquaculture, Jul 2018, Cairns, Australia. ⟨hal-03187121⟩
  • Pierrick Haffray, Anastasia Bestin, Florian Enez, Sébastien Courant, Daniel Guemene, et al.. Genetic parameters of resistance to gastroenteritis (rtge) and rainbow trout fry syndrome (rtfs) in rainbow trout oncorhynchus mykiss and their genetic correlations with production traits. World Aquaculture 2018, Aug 2018, Montpellier, France. ⟨hal-02738108⟩
  • Mathieu Besson, Francois Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. Sélection du bar pour l’efficacité alimentaire: on y arrive. Journée du SFAM, Mar 2018, Montpellier, France. ⟨hal-03156814⟩
  • François Allal, Sebastien Ferrari, Khaled Horri, Alain Vergnet, David Benhaïm, et al.. Heritability of boldness and hypoxia avoidance in European seabass, Dicentrarchus labrax. Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia. ⟨hal-03156670⟩
  • Mathieu Besson, François Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. Sélectionner sur l’efficacité alimentaire : une nouvelle approche chez le bar. Journées Techniques du Sysaaf, Dec 2017, Rennes, France. ⟨hal-03156749⟩
  • François Allal, Pierrick Haffray, Marc Vandeputte. La sélection génomique chez les poissons marins, pour quoi faire ?. Journée du SFAMN (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2017, Montpellier, France. ⟨hal-03155373⟩
  • Marc Vandeputte, Clémence Fraslin, Jérôme Bugeon, François Allal, Antonio Puledda, et al.. Peut-on sélectionner sur le rendement de filet chez les poissons ? (et chez le bar en particulier). Journée du SFAMN (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2017, Montpellier, France. ⟨hal-03155369⟩
  • François Allal, Quoc Khanh Doan, Béatrice Chatain, Alain Vergnet, Gilles Breuil, et al.. Héritabilité de la résistance à la nécrose nerveuse virale de populations sauvages de Bar/Loup (Dicentrarchus labrax). Journées techniques du Sysaaf, Dec 2017, Rennes, France. ⟨hal-03156758⟩
  • Marc Vandeputte, François Allal, Mathilde Dupont-Nivet, Pierrick Haffray. Implementing successful aquaculture breeding programs: the keys to success in France. XVI congreso nacional de acuicultura - Journée Franco Espagnole, Oct 2017, Saragosse, Spain. ⟨hal-02734602⟩
  • François Allal, Quoc Khanh Doan, Béatrice Chatain, Pierrick Haffray, Alain Vergnet, et al.. Genetic variation of resistance to Viral Nervous Necrosis in wild populations of the European sea bass (Dicentrarchus labrax). XVI Congreso nacional de Aquaculture, Oct 2017, Zaragoza, Spain. ⟨10.1016/j.aquaculture.2017.05.011⟩. ⟨hal-03155395⟩
  • Quoc Khanh Doan, Marc Vandeputte, Béatrice Chatain, Pierrick Haffray, Alain Vergnet, et al.. Genetic variation of resistance to Viral Nervous Necrosis and genetic correlations with production traits in wild populations of the European sea bass (Dicentrarchus labrax). Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia. ⟨hal-03156682⟩
  • François Allal, Ronan Griot, Pierre-Alexandre Gagnaire, Christophe C. Klopp, Aline Bajek, et al.. GENESEA : développement de la sélection génomique chez le bar et la daurade. Journées Techniques du Sysaaf, Dec 2017, Rennes, France. ⟨hal-03156734⟩
  • François Allal, Marc Vandeputte, Alain Vergnet, Frédéric Clota, Mathieu Besson, et al.. Efficacité d’une sélection pour la résistance au jeûne. Journées Techniques du Sysaaf, Dec 2017, Rennes, France. ⟨hal-03156744⟩
  • François Allal, Khanh Doan Q., Alain Vergnet, Béatrice Chatain, Gilles Breuil, et al.. Résistance à la nodavirose des populations naturelles de bar. 5e journées de la Recherche Filière piscicole, Jul 2016, paris, France. ⟨hal-02795243⟩
  • Pierrick Haffray, Dofungo Ouatarra, Sophie Cariou, Jean-Sébastien Bruant, Frederic Ventre, et al.. Genetic parameters of indirect predictors of gutted and fillet yields in the gilthead sea bream Sparus aurata in using 2D camera, 3D digitizer and ultrasound technologies. Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom. 1146 p. ⟨hal-02741462⟩
  • François Allal, Quoc Khanh Doan, Béatrice Chatain, Alain Vergnet, Marc Vandeputte. Résistance au nodavirus chez le bar sauvage. Journée du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2016, La Grande Motte, France. ⟨hal-02796959⟩
  • Sebastien Ferrari, Alain Vergnet, François Allal, Frédéric Clota, Béatrice Chatain, et al.. Efficacité alimentaire individuelle chez le bar. Journée Technique Piscicole du Sysaaf, Feb 2016, Paris, France. ⟨hal-02798942⟩
  • Christos Palaiokostas, Sophie Cariou, Anastasia Bestin, Jean-Sébastien Bruant, Pierrick Haffray, et al.. Investigation of genetic resistance to Viral Nervous Necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing. Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom. ⟨hal-03155244⟩
  • Marc Vandeputte, Antonio Puledda, Anne Sophie Tyran, Anastasia Bestin, Céline Coulombet, et al.. Prédicteurs morphologiques du rendement chez le bar: projet BAR3. Journée Technique Piscicole du Sysaaf, Feb 2016, Paris, France. ⟨hal-02800398⟩
  • Anne-Sophie Tyran, Alexandre Desgranges, Anastasia Bestin, Florian Enez, François Allal, et al.. Résistance génétique à l'entérite chez la truite ? Interaction avec la flavobactériose et les caractères de production. 5. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2016, Paris, France. ⟨hal-02743196⟩
  • Dofungo Ouatarra, Anastasia Bestin, Pierrick Haffray, Florian Enez, Sophie Cariou, et al.. Utilisation d'imagerie et d'ultrasons pour l'amélioration du rendement en chair par sélection génétique de la daurade. 5. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2016, Paris, France. pp.30. ⟨hal-02741919⟩
  • Quoc Khanh Doan, Marc Vandeputte, Béatrice Chatain, Alain Vergnet, François Allal. Combining VITASSIGN and COLONY : an efficient practical procedure for parental assignment with missing parents. ISGA XII, Jun 2015, Santiago de Compostela, Spain. ⟨hal-01535335⟩
  • Marc Vandeputte, K. Horri, F. Allal, S. Ferrari S, M. -O Vidal, et al.. Does early growth play a role in the sex determination of european seabass dicentrarchus labrax?. 12th International Symposium on Genetics in Aquaculture (ISGA), Jun 2015, Santiago de Compostela, Spain. pp.1. ⟨hal-02735070⟩
  • Marc Vandeputte, Khaled Horri, François Allal, Sebastien Ferrari, Marie-Odile Vidal, et al.. The phenotypic and genetic links between early individual growth and sex determination in European sea bass. Aquaculture Europe 2015, Oct 2015, Rotterdam, Netherlands. ⟨hal-01536551⟩
  • François Allal, Quoc Khanh Doan, Beatrice Chatain, Alain Vergnet, Marc Vandeputte. Combining VITASSIGN and COLONY for pedigree reconstruction in a case of factorial mating with missing parental genotypes. Aquaculture Europe 2015, Oct 2015, Rotterdam, Netherlands. ⟨hal-01535332⟩
  • Khanh Doan Q., Marc Vandeputte, Béatrice Chatain, Thierry Morin, François Allal. Selective breeding for resistance to Viral Nervous Necrosis disease: prospective procedure for sustainable development in aquaculture. Sustainable Fisheries Development Workshop, Nov 2015, Taiwan. ⟨hal-02795348⟩
  • François Allal, Sébastien Ferrari, Khaled Horri, Béatrice Chatain, Marc Vandeputte. La personnalité du bar… un caractère héritable. Journée du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2015, La Grande Motte, France. ⟨hal-01535337⟩
  • François Allal, Q.K. Doan, Béatrice Chatain, Alain Vergnet, Marc Vandeputte. Combining VITASSIGN and COLONY for pedigree reconstruction in a case of factorial mating with missing parental genotypes. Aquaculture 2015: Cutting edge science in Aquaculture, Aug 2015, Montpellier, France. ⟨hal-01535334⟩
  • François Allal, Sebastien Ferrari, Khaled Horri, Marie-Odile Vidal, François Ruelle, et al.. Heritability of coping styles in farmed European sea bass. 12. International Symposium on Genetics in Aquaculture, Jun 2015, Santiago de Compostela, Spain. pp.1. ⟨hal-02736002⟩

Conference poster9 documents

  • Alain Vergnet, Frédéric Clota, Edoh Denis, François Ruelle, Marie-Odile Blanc, et al.. Phenotypic characterization of the three main natural populations of seabass (Dicentrarchus labrax) on growth and quality traits performances. Aquaculture Europe 2021, Oct 2021, Funchal, Portugal. ⟨hal-03360553⟩
  • François Allal, Mathieu Besson, - Tomagamestudio. Aquakultor: le premier jeu de simulation en aquaculture. 6. Journées de la Recherche Filière Piscicole, Jul 2019, Paris, France. 2019. ⟨hal-02735109⟩
  • Charles Rodde, Marc Vandeputte, François Allal, Mathieu Besson, Alain Vergnet, et al.. Individual feed intake and body weight gain relationship according to genetic origin and rearing temperature in European sea bass Dicentrarchus labrax. Aquaculture Europe 2019, Oct 2019, Berlin, Germany. ⟨hal-03187449⟩
  • Marc Vandeputte, François Allal, Dafni Anastasiadi, Alexandre Vasilescu, Benjamin Geffroy, et al.. Accurate genomic prediction of phenotypic sex within European sea bass families : a unique tool to understand and control sex ratio variations in a species with polygenic sex determination. AQUA 2018, Aug 2018, Montpellier, France. ⟨hal-03187169⟩
  • François Allal, Maud Duranton, Romain Morvezen, Sophie Brard-Fudulea, Charles Poncet, et al.. Development and characterization of a 57K Single Nucleotide Polymorphism array for European sea bass. AQUA 2018, Aug 2018, Montpellier, France. ⟨hal-03187160⟩
  • Marc Vandeputte, Mathieu Besson, François Allal, Florence Phocas, Edwige Quillet. Selective breeding to reduce the ecological footprint of aquaculture. Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia. ⟨hal-03156701⟩
  • Mathieu Besson, François Allal, Béatrice Chatain, Alain Vergnet, Frédéric Clota, et al.. A medium-throughput method to phenotype fish for individual feed efficiency. Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia. ⟨hal-03155407⟩
  • Marc Vandeputte, Khaled Horri, François Allal, Sebastien Ferrari, Marie-Odile Vidal, et al.. Sexe et croissance précoce chez le bar : des liens très étroits. 5. Journées de la Recherche Filière Piscicole, Jul 2016, Paris, France. 2016. ⟨hal-02795242⟩
  • Sebastien Ferrari, Alain Vergnet, Frédéric Clota, Béatrice Chatain, François Allal, et al.. Mesurer l’efficacité alimentaire individuelle chez le bar ?. 5emes Journées Recherche Filière Piscicole, Jul 2016, Paris, France. ⟨hal-03154832⟩

Book sections1 document

  • François Allal, Nguyen Hong Nguyen. Genomic Selection in AquacultureAquaculture Species. Ahmadi; Nourollah and Bartholomé; Jérôme. Complex Trait Prediction: Methods and Protocols, Springer US, pp.469--491, 2022, Methods in Molecular Biology, 978-1-07-162205-6. ⟨10.1007/978-1-0716-2205-6_17⟩. ⟨hal-03679217⟩

Patents1 document

  • Francesc Piferrer, Dafni Anastasiadi, Nuria Sanchez-Baizan, François Allal, Marc Vandeputte. Method for predicting sex in fish. Spain, Patent n° : EP 3 620 536 A1. 2018. ⟨hal-03187140⟩