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How genomics can help biodiversity conservation
Kathrin Theissinger
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Carlos Fernandes
,
Giulio Formenti
,
Iliana Bista
,
Paul Berg
Article dans une revue
hal-04082874v1
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Sidestepping Darwin: horizontal gene transfer from plants to insects
Clément Gilbert
,
Florian Maumus
Article dans une revue
hal-04072018v1
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A chromosome-scale assembly of the quinoa genome provides insights into the structure and dynamics of its subgenomes
Elodie Rey
,
Peter Maughan
,
Florian Maumus
,
Daniel Lewis
,
Leanne Wilson
Article dans une revue
hal-04344166v1
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Endogenous Caulimovirids: Fossils, Zombies, and Living in Plant Genomes
Héléna Vassilieff
,
Andrew Geering
,
Nathalie Choisne
,
Pierre-Yves Teycheney
,
Florian Maumus
Article dans une revue
hal-04152917v1
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CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes
Héléna Vassilieff
,
Sana Haddad
,
Véronique Jamilloux
,
Nathalie Choisne
,
Vikas Sharma
Article dans une revue
hal-03883611v1
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Recent Acquisition of Functional m6A RNA Demethylase Domain in Orchid Ty3/Gypsy Elements
Luis Alvarado-Marchena
,
Mireya Martínez-Pérez
,
Frederic Aparicio
,
Vicente Pallas
,
Florian Maumus
Article dans une revue
hal-03717458v1
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Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci
Clément Gilbert
,
Florian Maumus
Article dans une revue
hal-03846467v1
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Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
Sarah Carey
,
Jerry Jenkins
,
John Lovell
,
Florian Maumus
,
Avinash Sreedasyam
Article dans une revue
hal-03283299v1
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Aethionema arabicum genome annotation using PacBio full‐length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research
Noe Fernandez‐pozo
,
Timo Metz
,
Jake Chandler
,
Lydia Gramzow
,
Zsuzsanna Mérai
Article dans une revue
hal-03135342v1
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Sarah Farhat
,
Phuong Le
,
Ehsan Kayal
,
Benjamin Noel
,
Estelle Bigeard
Article dans une revue
hal-03114990v1
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Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants
Vikas Sharma
,
Pierre Lefeuvre
,
Philippe Roumagnac
,
Denis Filloux
,
Pierre-Yves Teycheney
Article dans une revue
hal-02946712v1
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Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest
Michael Sparks
,
Raman Bansal
,
Joshua Benoit
,
Michael Blackburn
,
Hsu Chao
Article dans une revue
hal-02927020v1
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Current status of the multinational Arabidopsis community
Keith Adams
,
Wagner Araújo
,
Sebastien Aubourg
,
Sacha Baginsky
,
Erica Bakker
Article dans une revue
hal-02927028v1
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Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato
Michael Alonge
,
Xingang Wang
,
Matthias Benoit
,
Sebastian Soyk
,
Lara Pereira
Article dans une revue
hal-02927024v1
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Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes
Sylvain Legrand
,
Thibault Caron
,
Florian Maumus
,
Sol Schvartzman
,
Leandro Quadrana
Article dans une revue
hal-02265374v1
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RepetDB: a unified resource for transposable element references
Joëlle Amselem
,
Guillaume Cornut
,
Nathalie Choisne
,
Michael Alaux
,
Françoise Alfama Depauw
Article dans une revue
hal-02625212v1
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Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms
Achal Rastogi
,
Uma Maheswari
,
Richard Dorrell
,
Fabio Rocha Jimenez Vieira
,
Florian Maumus
Article dans une revue
hal-02366536v1
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Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants
Shira Corem
,
Adi Doron Faigenboim
,
Ophélie Jouffroy
,
Florian Maumus
,
Tzahi Arazi
Article dans une revue
hal-02628646v1
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The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
Daniel Lang
,
Kristian Ullrich
,
Florent Murat
,
Jörg Fuchs
,
Jerry Jenkins
Article dans une revue
hal-01760352v1
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The Chara genome
Tomoaki Nishiyama
,
Hidetoshi Sakayama
,
Jan de Vries
,
Henrik Buschmann
,
Denis Saint-Marcoux
Article dans une revue
hal-02624417v1
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Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae
Seydina Issa Diop
,
Andrew D. W. Geering
,
Françoise Alfama-Depauw
,
Mikaël Loaec
,
Pierre-Yves Teycheney
Article dans une revue
hal-02626005v1
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Oak genome reveals facets of long lifespan
Christophe Plomion
,
Jean-Marc Aury
,
Joelle Amselem
,
Thibault Leroy
,
Florent Murat
Article dans une revue
hal-01820559v1
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Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom
Swaraj Basu
,
Shrikant Patil
,
Daniel Mapleson
,
Monia Teresa Russo
,
Laura Vitale
Article dans une revue
hal-01607004v1
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Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Thomas C. Mathers
,
Yazhou Chen
,
Gemy Kaithakottil
,
Fabrice Legeai
,
Sam T. Mugford
Article dans une revue
hal-01588181v1
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges
Anaïs Gouin
,
Anthony Bretaudeau
,
Kiwoong Nam
,
Sylvie Gimenez
,
Jean-Marc Aury
Article dans une revue
hal-01633879v1
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De novo assembly of a new Solanum pennellii accession using nanopore sequencing
Maximilian H.-W. Schmidt
,
Alexander Vogel
,
Alisandra K. Denton
,
Benjamin Istace
,
Alexandra Wormit
Article dans une revue
hal-02625700v1
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Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Thomas Mock
,
Robert P Otillar
,
Jan Strauss
,
Mark Mcmullan
,
Pirita Paajanen
Article dans une revue
hal-01587937v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Thomas C. Mathers
,
Yazhou Chen
,
Gemy Kaithakottil
,
Fabrice Legeai
,
Sam T. Mugford
Article dans une revue
hal-01500475v1
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Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)
Florent Murat
,
Alexandra Louis
,
Florian Maumus
,
Alix Armero
,
Richard Cooke
Article dans une revue
hal-02630062v1
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Study of gene trafficking between Acanthamoeba and giant viruses suggests an undiscovered family of Amoeba-infecting viruses
Florian Maumus
,
Guillaume Blanc
Article dans une revue
hal-01604735v1
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Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening
Ophélie Jouffroy
,
Surya Saha
,
Lukas Mueller
,
Hadi Quesneville
,
Florian Maumus
Article dans une revue
hal-02631886v1
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Giant viruses at the core of microscopic wars with global impacts
Adrien Villain
,
Lucie Gallot-Lavallee
,
Guillaume Blanc
,
Florian Maumus
Article dans une revue
hal-02639930v1
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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
Jeanine L. Olsen
,
Pierre Rouzé
,
Bram Verhelst
,
Yao-Cheng Y.-C. Lin
,
Till Bayer
Article dans une revue
hal-01289099v1
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Impact and insights from ancient repetitive elements in plant genomes
Florian Maumus
,
Hadi Quesneville
Article dans une revue
hal-02638420v1
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Understanding Brassicaceae evolution through ancestral genome reconstruction
Florent Murat
,
Alexandra Louis
,
Florian Maumus
,
Alix Armero Villanueva
,
Richard Cooke
Article dans une revue
hal-01281832v1
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Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses
Guillaume Blanc
,
Lucie Gallot-Lavallee
,
Florian Maumus
Proceedings of the National Academy of Sciences of the United States of America, 2015, 112 (38), pp.E5318-E5326. ⟨10.1073/pnas.1506469112⟩
Article dans une revue
hal-02639645v1
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Impact of transposable elements on insect genomes and biology
Florian Maumus
,
Anna-Sophie Fiston-Lavier
,
Hadi Quesneville
Article dans une revue
hal-02640108v1
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Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
Eva-Maria Willing
,
Vimal Rawat
,
Terezie Mandáková
,
Florian Maumus
,
Geo Velikkakam James
Article dans une revue
hal-01179557v1
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A new approach for annotation of transposable elements using small RNA mapping.
Moaine El Baidouri
,
Kyung Do Kim
,
Brian Abernathy
,
Siwaret Arikit
,
Florian Maumus
Article dans une revue
hal-01215276v1
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Plant genomes enclose footprints of past infections by giant virus relatives
Florian Maumus
,
Aline Epert
,
Fabien Nogué
,
Guillaume Blanc
Article dans une revue
hal-01204072v1
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Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana
Florian Maumus
,
Hadi Quesneville
Article dans une revue
hal-02633174v1
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The genome of the stress-tolerant wild tomato species Solanum pennellii
Anthony Bolger
,
Federico Scossa
,
Marie E Bolger
,
Christa Lanz
,
Florian Maumus
Article dans une revue
hal-01204066v1
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A call for benchmarking transposable element annotation methods.
Douglas R Hoen
,
Glenn Hickey
,
Guillaume Bourque
,
Josep Casacuberta
,
Richard Cordaux
Article dans une revue
hal-01204840v1
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Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
Andrew D W Geering
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Florian Maumus
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Dario Copetti
,
Nathalie Choisne
,
Derrick J Zwickl
Article dans une revue
hal-02631214v1
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Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter
Florian Maumus
,
Hadi Quesneville
Article dans une revue
hal-02636753v1
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Global discovery and characterization of small non-coding RNAs in marine microalgae
Sara López-Gomollón
,
Matthew Beckers
,
Tina Rathjen
,
Simon Moxon
,
Florian Maumus
Article dans une revue
hal-02640460v1
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The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Tanja Slotte
,
Khaled M Hazzouri
,
J Arvid Agren
,
Daniel Koenig
,
Florian Maumus
Article dans une revue
hal-02650401v1
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Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Alaguraj Veluchamy
,
Xin Lin
,
Florian Maumus
,
Maximo Rivarola
,
Jaysheel Bhavsar
Article dans une revue
hal-01545322v1
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Pan genome of the phytoplankton Emiliania underpins its global distribution
Betsy A Read
,
Jessica Kegel
,
Mary J Klute
,
Alan Kuo
,
Stephane C Lefebvre
Article dans une revue
hal-01074841v1
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Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ... What if Brown Algae Were Capable of Adaptive Immunity?
Antonios Zambounis
,
Marek Elias
,
Lieven Sterck
,
Florian Maumus
,
Claire M. M. Gachon
Article dans une revue
hal-02647640v1
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The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
J. Mark Cock
,
Lieven Sterck
,
Sophia Ahmed
,
Andrew E. Allen
,
Grigoris Amoutzias
Article dans une revue
hal-02649287v1
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Stemming epigenetics in marine stramenopiles
Florian Maumus
,
Pablo Rabinowicz
,
Chris Bowler
,
Máximo Rivarola
Current Genomics, 2011, 12 (5), pp.357-370
Article dans une revue
hal-02644011v1
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The gypsy database (GyDB) of mobile genetic elements: release 2.0
Carlos Llorens
,
Ricardo Futami
,
Laura Covelli
,
Laura Dominguez-Escriba
,
Jose M. Viu
Article dans une revue
hal-02648997v1
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The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae
J. Mark Cock
,
Lieven Sterck
,
Pierre Rouzé
,
Delphine Scornet
,
Andrew E. Allen
Article dans une revue
cea-00906990v1
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The $Phaeodactylum$ genome reveals the evolutionary history of diatom genomes
Chris Bowler
,
Andrew E. Allen
,
Jonathan H. Badger
,
Jane Grimwood
,
Kamel Jabbari
Article dans une revue
cea-00910244v1
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