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Number of documents

53

Résumé - Florian Maumus


Journal articles48 documents

  • Sarah Carey, Jerry Jenkins, John Lovell, Florian Maumus, Avinash Sreedasyam, et al.. Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science Advances , American Association for the Advancement of Science (AAAS), 2021, 7 (27), pp.eabh2488. ⟨10.1126/sciadv.abh2488⟩. ⟨hal-03283299⟩
  • Noe Fernandez‐pozo, Timo Metz, Jake Chandler, Lydia Gramzow, Zsuzsanna Mérai, et al.. Aethionema arabicum genome annotation using PacBio full‐length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research. Plant Journal, Wiley, 2021, ⟨10.1111/tpj.15161⟩. ⟨hal-03135342⟩
  • Sarah Farhat, Phuong Le, Ehsan Kayal, Benjamin Noel, Estelle Bigeard, et al.. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp. BMC Biology, BioMed Central, 2021, 19 (1), ⟨10.1186/s12915-020-00927-9⟩. ⟨hal-03114990⟩
  • Michael Alonge, Xingang Wang, Matthias Benoit, Sebastian Soyk, Lara Pereira, et al.. Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell, Elsevier, 2020, 182 (1), pp.145-161.e23. ⟨10.1016/j.cell.2020.05.021⟩. ⟨hal-02927024⟩
  • Vikas Sharma, Pierre Lefeuvre, Philippe Roumagnac, Denis Filloux, Pierre-Yves Teycheney, et al.. Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants. Virus Evolution, Oxford University Press, 2020, ⟨10.1093/ve/veaa071⟩. ⟨hal-02946712⟩
  • Keith Adams, Wagner Araújo, Sebastien Aubourg, Sacha Baginsky, Erica Bakker, et al.. Current status of the multinational Arabidopsis community. Plant Direct, 2020, 4 (7), pp.e00248. ⟨10.1002/pld3.248⟩. ⟨hal-02927028⟩
  • Michael Sparks, Raman Bansal, Joshua Benoit, Michael Blackburn, Hsu Chao, et al.. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. BMC Genomics, 2020, 21 (1), ⟨10.1186/s12864-020-6510-7⟩. ⟨hal-02927020⟩
  • Joëlle Amselem, Guillaume Cornut, Nathalie Choisne, Michael Alaux, Françoise Alfama Depauw, et al.. RepetDB: a unified resource for transposable element references. Mobile DNA, BioMed Central, 2019, 10, pp.1-8. ⟨10.1186/s13100-019-0150-y⟩. ⟨hal-02625212⟩
  • Sylvain Legrand, Thibault Caron, Florian Maumus, Sol Schvartzman, Leandro Quadrana, et al.. Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes. Mobile DNA, BioMed Central, 2019, 10 (1), pp.1-17. ⟨10.1186/s13100-019-0171-6⟩. ⟨hal-02265374⟩
  • Seydina Issa Diop, Andrew D. W. Geering, Françoise Alfama-Depauw, Mikaël Loaec, Pierre-Yves Teycheney, et al.. Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae. Scientific Reports, Nature Publishing Group, 2018, 8, pp.1-9. ⟨10.1038/s41598-017-16399-x⟩. ⟨hal-02626005⟩
  • Achal Rastogi, Uma Maheswari, Richard Dorrell, Fabio Rocha Jimenez Vieira, Florian Maumus, et al.. Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms. Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.1-14. ⟨10.1038/s41598-018-23106-x⟩. ⟨hal-02366536⟩
  • Shira Corem, Adi Doron Faigenboim, Ophélie Jouffroy, Florian Maumus, Tzahi Arazi, et al.. Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants. The Plant cell, American Society of Plant Biologists (ASPB), 2018, 30 (7), pp.1628-1644. ⟨10.1105/tpc.18.00167⟩. ⟨hal-02628646⟩
  • Tomoaki Nishiyama, Hidetoshi Sakayama, Jan de Vries, Henrik Buschmann, Denis Saint-Marcoux, et al.. The Chara genome: Secondary complexity and implications for plant terrestrialization. Cell, Elsevier, 2018, 174 (2), pp.448-464. ⟨10.1016/j.cell.2018.06.033⟩. ⟨hal-02624417⟩
  • Daniel Lang, Kristian Ullrich, Florent Murat, Jörg Fuchs, Jerry Jenkins, et al.. The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. Plant Journal, Wiley, 2018, 93 (3), pp.515 - 533. ⟨10.1111/tpj.13801⟩. ⟨hal-01760352⟩
  • Christophe Plomion, Jean-Marc Aury, Joelle Amselem, Thibault Leroy, Florent Murat, et al.. Oak genome reveals facets of long lifespan. Nature Plants, Nature Publishing Group, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩. ⟨hal-01820559⟩
  • Swaraj Basu, Shrikant Patil, Daniel Mapleson, Monia Teresa Russo, Laura Vitale, et al.. Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. New Phytologist, Wiley, 2017, 215 (1), pp.140-156. ⟨10.1111/nph.14557⟩. ⟨hal-01607004⟩
  • Maximilian H.-W. Schmidt, Alexander Vogel, Alisandra K. Denton, Benjamin Istace, Alexandra Wormit, et al.. De novo assembly of a new Solanum pennellii accession using nanopore sequencing. The Plant cell, American Society of Plant Biologists (ASPB), 2017, 29, pp.2336-2348. ⟨10.1105/tpc.17.00521⟩. ⟨hal-02625700⟩
  • Anaïs Gouin, Anthony Bretaudeau, Kiwoong Nam, Sylvie Gimenez, Jean-Marc Aury, et al.. Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩. ⟨hal-01633879⟩
  • Thomas Mock, Robert P Otillar, Jan Strauss, Mark Mcmullan, Pirita Paajanen, et al.. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.. Nature, Nature Publishing Group, 2017, 541, pp.536-540. ⟨10.1038/nature20803⟩. ⟨hal-01587937⟩
  • Thomas C. Mathers, Yazhou Chen, Gemy Kaithakottil, Fabrice Legeai, Sam T. Mugford, et al.. Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, BioMed Central, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩. ⟨hal-01588181⟩
  • Thomas C. Mathers, Yazhou Chen, Gemy Kaithakottil, Fabrice Legeai, Sam T. Mugford, et al.. Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, BioMed Central, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩. ⟨hal-01500475⟩
  • Florent Murat, Alexandra Louis, Florian Maumus, Alix Armero, Richard Cooke, et al.. Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015). Genome Biology, BioMed Central, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩. ⟨hal-02630062⟩
  • Florian Maumus, Guillaume Blanc. Study of gene trafficking between Acanthamoeba and giant viruses suggests an undiscovered family of Amoeba-infecting viruses. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2016, 8 (11), pp.3351-3363. ⟨10.1093/gbe/evw260⟩. ⟨hal-01604735⟩
  • Adrien Villain, Lucie Gallot-Lavallee, Guillaume Blanc, Florian Maumus. Giant viruses at the core of microscopic wars with global impacts. Current Opinion in Virology, Elsevier, 2016, 17, pp.130-137. ⟨10.1016/j.coviro.2016.03.007⟩. ⟨hal-02639930⟩
  • Jeanine L. Olsen, Pierre Rouzé, Bram Verhelst, Yao-Cheng Lin, Till Bayer, et al.. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature, Nature Publishing Group, 2016, 530 (7590), pp.331-335. ⟨10.1038/nature16548⟩. ⟨hal-01289099⟩
  • Ophélie Jouffroy, Surya Saha, Lukas Mueller, Hadi Quesneville, Florian Maumus. Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening. BMC Genomics, BioMed Central, 2016, 17 (1), pp.1-15. ⟨10.1186/s12864-016-2980-z⟩. ⟨hal-02631886⟩
  • Florian Maumus, Hadi Quesneville. Impact and insights from ancient repetitive elements in plant genomes. Current Opinion in Plant Biology, Elsevier, 2016, 30, pp.41-46. ⟨10.1016/j.pbi.2016.01.003⟩. ⟨hal-02638420⟩
  • Moaine El Baidouri, Kyung Do Kim, Brian Abernathy, Siwaret Arikit, Florian Maumus, et al.. A new approach for annotation of transposable elements using small RNA mapping.. Nucleic Acids Research, Oxford University Press, 2015, 43 (13), pp.e84. ⟨10.1093/nar/gkv257⟩. ⟨hal-01215276⟩
  • Eva-Maria Willing, Vimal Rawat, Terezie Mandáková, Florian Maumus, Geo Velikkakam James, et al.. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants, Nature Publishing Group, 2015, 1 (2), pp.14023-14028. ⟨10.1038/nplants.2014.23⟩. ⟨hal-01179557⟩
  • Florent Murat, Alexandra Louis, Florian Maumus, Alix Armero Villanueva, Richard Cooke, et al.. Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology, BioMed Central, 2015, 16 (262), ⟨10.1186/s13059-015-0814-y⟩. ⟨hal-01281832⟩
  • Guillaume Blanc, Lucie Gallot-Lavallee, Florian Maumus. Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2015, 112 (38), pp.E5318-E5326. ⟨10.1073/pnas.1506469112⟩. ⟨hal-02639645⟩
  • Florian Maumus, Anna-Sophie Fiston-Lavier, Hadi Quesneville. Impact of transposable elements on insect genomes and biology. Current Opinion in Insect Science, Elsevier, 2015, 7, pp.30-36. ⟨10.1016/j.cois.2015.01.001⟩. ⟨hal-02640108⟩
  • Douglas R Hoen, Glenn Hickey, Guillaume Bourque, Josep Casacuberta, Richard Cordaux, et al.. A call for benchmarking transposable element annotation methods.. Mobile DNA, BioMed Central, 2014, 6, pp.13. ⟨10.1186/s13100-015-0044-6⟩. ⟨hal-01204840⟩
  • Florian Maumus, Aline Epert, Fabien Nogué, Guillaume Blanc. Plant genomes enclose footprints of past infections by giant virus relatives. Nature Communications, Nature Publishing Group, 2014, 5, ⟨10.1038/ncomms5268⟩. ⟨hal-01204072⟩
  • Anthony Bolger, Federico Scossa, Marie E Bolger, Christa Lanz, Florian Maumus, et al.. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics, Nature Publishing Group, 2014, 46 (9), pp.1034-1038. ⟨10.1038/ng.3046⟩. ⟨hal-01204066⟩
  • Andrew D W Geering, Florian Maumus, Dario Copetti, Nathalie Choisne, Derrick J Zwickl, et al.. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications, Nature Publishing Group, 2014, 5, ⟨10.1038/ncomms6269⟩. ⟨hal-02631214⟩
  • Florian Maumus, Hadi Quesneville. Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter. PLoS ONE, Public Library of Science, 2014, 9 (4), ⟨10.1371/journal.pone.0094101⟩. ⟨hal-02636753⟩
  • Florian Maumus, Hadi Quesneville. Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana. Nature Communications, Nature Publishing Group, 2014, 5, 9 p. ⟨10.1038/ncomms5104⟩. ⟨hal-02633174⟩
  • Sara López-Gomollón, Matthew Beckers, Tina Rathjen, Simon Moxon, Florian Maumus, et al.. Global discovery and characterization of small non-coding RNAs in marine microalgae. BMC Genomics, BioMed Central, 2014, 15, ⟨10.1186/1471-2164-15-697⟩. ⟨hal-02640460⟩
  • Alaguraj Veluchamy, Xin Lin, Florian Maumus, Maximo Rivarola, Jaysheel Bhavsar, et al.. Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum. Nature Communications, Nature Publishing Group, 2013, 4, pp.2091. ⟨10.1038/ncomms3091⟩. ⟨hal-01545322⟩
  • Betsy A Read, Jessica Kegel, Mary J Klute, Alan Kuo, Stephane C Lefebvre, et al.. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, Nature Publishing Group, 2013, 499 (7457), pp.209-213. ⟨10.1038/nature12221⟩. ⟨hal-01074841⟩
  • Tanja Slotte, Khaled M Hazzouri, J Arvid Agren, Daniel Koenig, Florian Maumus, et al.. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics, Nature Publishing Group, 2013, 45 (7), pp.831-835. ⟨10.1038/ng.2669⟩. ⟨hal-02650401⟩
  • Antonios Zambounis, Marek Elias, Lieven Sterck, Florian Maumus, Claire M. M. Gachon. Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ... What if Brown Algae Were Capable of Adaptive Immunity?. Molecular Biology and Evolution, Oxford University Press (OUP), 2012, 29 (4), pp.1263 - 1276. ⟨10.1093/molbev/msr296⟩. ⟨hal-02647640⟩
  • J. Mark Cock, Lieven Sterck, Sophia Ahmed, Andrew E. Allen, Grigoris Amoutzias, et al.. The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium. Advances in Botanical Research, Elsevier, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩. ⟨hal-02649287⟩
  • Florian Maumus, Pablo Rabinowicz, Chris Bowler, Máximo Rivarola. Stemming epigenetics in marine stramenopiles. Current Genomics, Bentham Science Publishers, 2011, 12 (5), pp.357-370. ⟨hal-02644011⟩
  • Carlos Llorens, Ricardo Futami, Laura Covelli, Laura Dominguez-Escriba, Jose M. Viu, et al.. The gypsy database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Research, Oxford University Press, 2011, 39 (S1), pp.D70-D74. ⟨10.1093/nar/gkq1061⟩. ⟨hal-02648997⟩
  • J. Mark Cock, Lieven Sterck, Pierre Rouzé, Delphine Scornet, Andrew E. Allen, et al.. The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae. Nature, Nature Publishing Group, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩. ⟨cea-00906990⟩
  • Chris Bowler, Andrew E. Allen, Jonathan H. Badger, Jane Grimwood, Kamel Jabbari, et al.. The $Phaeodactylum$ genome reveals the evolutionary history of diatom genomes. Nature, Nature Publishing Group, 2008, 456 (7410), pp.239-244. ⟨10.1038/nature07410⟩. ⟨cea-00910244⟩

Conference papers2 documents

  • Saad Serfraz, V. Sharma, Andrew Geering, Florian Maumus, Pierre-Yves Teycheney. Exploring the role of Florendovirus in plant biology. Caribbean Science and Innovation Meeting 2019, Oct 2019, Pointe-à-Pitre (Guadeloupe), France. ⟨hal-02575469⟩
  • J. Mark Cock, Jonas Collen, Lieven Sterck, Pierre Rouzé, Delphine Scornet, et al.. Nature, nurture and the structure of macroalgal genomes. 5. European Phycological Congress, Sep 2011, Rhodes, Greece. ⟨hal-02749757⟩

Book sections1 document

  • Romain Gastineau, Nikolai Davidovich, Gert Hansen, Jan Rines, Angela Wulff, et al.. Haslea ostrearia-like Diatoms: Biodiversity out of the Blue. Sea Plants, 71, Elsevier Ltd, pp.25, 2014, Advances in Botanical Research, 978-0-12-408062-1. ⟨10.1016/B978-0-12-408062-1.00015-9⟩. ⟨hal-02801766⟩

Preprints, Working Papers, ...1 document

  • Thomas Mathers, Yazhou Chen, Gemy Kaithakottil, Fabrice Legeai, Sam Mugford, et al.. A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters. 2020. ⟨hal-02936181⟩

Software1 document

  • Veronique Jamilloux, Françoise Alfama-Depauw, Johann Confais, Mariène Wan, Agnes Baud, et al.. REPET v3.0. 2019. ⟨hal-02790461⟩