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46

Publications Florent Murat


Journal articles36 documents

  • Christophe Plomion, Jean-Marc Aury, Joelle Amselem, Thibault Leroy, Florent Murat, et al.. Oak genome reveals facets of long lifespan. Nature Plants, Nature Publishing Group, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩. ⟨hal-01820559⟩
  • Daniel Lang, Kristian Ullrich, Florent Murat, Jörg Fuchs, Jerry Jenkins, et al.. The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. Plant Journal, Wiley, 2018, 93 (3), pp.515 - 533. ⟨10.1111/tpj.13801⟩. ⟨hal-01760352⟩
  • Hélène Badouin, Jerome Gouzy, Christopher Grassa, Florent Murat, S Evan Staton, et al.. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature, Nature Publishing Group, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩. ⟨hal-01603287⟩
  • Florent Murat, Alix Armero Villanueva, Caroline Pont, Christophe Klopp, Jerome Salse. Reconstructing the genome of the most recent common ancestor of flowering plants. Nature Genetics, Nature Publishing Group, 2017, 49, pp.490-496. ⟨10.1038/ng.3813⟩. ⟨hal-01605642⟩
  • Florent Murat, Alexandra Louis, Florian Maumus, Alix Armero, Richard Cooke, et al.. Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015). Genome Biology, BioMed Central, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩. ⟨hal-02630062⟩
  • Moaine El Baidouri, Florent Murat, Maeva Veyssière, Mélanie Molinier, Raphaël-Gauthier Flores, et al.. Reconciling the evolutionary origin of bread wheat (Triticum aestivum). New Phytologist, Wiley, 2016, 213 (3), ⟨10.1111/nph.14113⟩. ⟨hal-01361976⟩
  • Christophe Plomion, Jean-Marc Aury, Joëlle Amselem, Tina Alaeitabar, Valérie Barbe, et al.. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.. Molecular Ecology Resources, Wiley/Blackwell, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩. ⟨hal-01579667⟩
  • Florent Murat, Alexandra Louis, Florian Maumus, Alix Armero Villanueva, Richard Cooke, et al.. Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology, BioMed Central, 2015, 16 (262), ⟨10.1186/s13059-015-0814-y⟩. ⟨hal-01281832⟩
  • Marina de Miguel, Jérôme Bartholome, François Ehrenmann, Florent Murat, Yoshinari Moriguchi, et al.. Evidence of intense chromosomal shuffling during conifer evolution. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (10), pp.evv185. ⟨10.1093/gbe/evv185⟩. ⟨hal-02285512⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Haris Gavranovic, Raphael Flores, et al.. Karyotype and Gene Order Evolution from ReconstructedExtinct Ancestors Highlight Contrasts in Genome Plasticity ofModern Rosid Crops. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (3), pp.735-749. ⟨10.1093/gbe/evv014⟩. ⟨hal-01133906⟩
  • Isabelle Lesur, Grégoire Le Provost, Pascal Bento, Corinne da Silva, Jean-Charles Leplé, et al.. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. BMC Genomics, BioMed Central, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩. ⟨hal-02285504⟩
  • Oxana Dobrovolskaya, Caroline Pont, Richard Sibout, Petr Martinek, Ekaterina Badaeva, et al.. FRIZZY PANICLE drives supernumerary spikelets in bread wheat (T. aestivum L.). Plant Physiology, American Society of Plant Biologists, 2015, 167 (1), pp.189-199. ⟨10.1104/pp.114.250043⟩. ⟨hal-01204099⟩
  • Alexandra Louis, Florent Murat, Jerome Salse, Hugues Roest Crollius. GenomicusPlants: a web resource to study genome evolution in flowering plants. Plant and Cell Physiology, Oxford University Press (OUP), 2015, 56 (1), pp.e4. ⟨10.1093/pcp/pcu177⟩. ⟨hal-01168460⟩
  • Rongzhi Zhang, Florent Murat, Caroline Pont, Thierry Langin, Jérôme Salse. Paleo-evolutionary plasticity of plant disease resistance genes. BMC Genomics, BioMed Central, 2014, 15 (1), pp.187. ⟨10.1186/1471-2164-15-187⟩. ⟨hal-02285469⟩
  • Alexander Myburg, Dario Grattapaglia, Gerald Tuskan, Uffe Hellsten, Richard Hayes, et al.. The genome of Eucalyptus grandis. Nature, Nature Publishing Group, 2014, 510 (7505), pp.356-362. ⟨10.1038/nature13308⟩. ⟨hal-02285478⟩
  • G Albert Wu, Simon Prochnik, Jerry Jenkins, Jérôme Salse, Uffe Hellsten, et al.. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology, Nature Publishing Group, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩. ⟨hal-02285484⟩
  • Florent Murat, Caroline Pont, Jérôme Salse. Paleogenomics in Triticeae for translational research. Current Plant Biology, Elsevier, 2014, 1, pp.34-39. ⟨10.1016/j.cpb.2014.08.003⟩. ⟨hal-02285486⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Raphaël-Gauthier Flores, Alix Armero Villanueva, et al.. Shared sub-genome dominance following polyploidization explains grass genome evolutionary plasticity from a 7 protochromosome ancestor with 16K protogenes. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2013, 6 (1), pp.12-33. ⟨10.1093/gbe/evt200⟩. ⟨hal-00964190⟩
  • Caroline Pont, Florent Murat, Sébastien Guizard, Raphaël-Gauthier Flores, Séverine Foucrier, et al.. Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant Journal, Wiley, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩. ⟨hal-00964421⟩
  • Shaogui Guo, Jianguo Zhang, Honghe Sun, Jerome Salse, William J. Lucas, et al.. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nature Genetics, Nature Publishing Group, 2013, 45 (1), pp.51 - U82. ⟨10.1038/ng.2470⟩. ⟨hal-01190670⟩
  • Florent Murat, Rongzhi Zhang, Sébastien Guizard, Raphael Flores, Alix Armero, et al.. Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes.. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2013, 6 (1), pp.12-33. ⟨hal-01218128⟩
  • Florent Murat, Yves van de Peer, Jerome Salse. Decoding Plant and Animal Genome Plasticity from Differential Paleo-Evolutionary Patterns and Processes. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2012, 4 (9), pp.917 - 928. ⟨10.1093/gbe/evs066⟩. ⟨hal-00964328⟩
  • Catherine Bodénès, Emilie Chancerel, Oliver Gailing, Giovanni G. Vendramin, Francesca Bagnoli, et al.. Comparative mapping in the Fagaceae and beyond with EST-SSRs. BMC Plant Biology, BioMed Central, 2012, 12 (153), 40 p. ⟨10.1186/1471-2229-12-153⟩. ⟨hal-00964224⟩
  • Michaël Abrouk, Rongzhi Zhang, Florent Murat, Aili Li, Caroline Pont, et al.. Grass MicroRNA Gene Paleohistory Unveils New Insights into Gene Dosage Balance in Subgenome Partitioning after Whole-Genome Duplication. The Plant cell, American Society of Plant Biologists (ASPB), 2012, 24 (5), pp.1776 - 1792. ⟨10.1105/tpc.112.095752⟩. ⟨hal-00964371⟩
  • Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, et al.. Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses. BMC Genomics, BioMed Central, 2012, 13 (1), pp.221. ⟨10.1186/1471-2164-13-221⟩. ⟨hal-02285438⟩
  • Caroline Pont, Florent Murat, Carole Confolent, Sandrine Balzergue, Jerome Salse. RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biology, BioMed Central, 2011, 12 (12), ⟨10.1186/gb-2011-12-12-r119⟩. ⟨hal-01190508⟩
  • Umar Masood Masood-Quraishi, Michaël Abrouk, Florent Murat, Caroline Pont, Séverine Foucrier, et al.. Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution. Plant Journal, Wiley, 2011, 65 (5), pp.745 - 756. ⟨10.1111/j.1365-313X.2010.04461.x⟩. ⟨hal-00964149⟩
  • Umar Masood Masood-Quraishi, Florent Murat, Michaël Abrouk, Caroline Pont, Carole Confolent, et al.. Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Functional and Integrative Genomics, Springer Verlag, 2011, 11 (1), pp.71 - 83. ⟨10.1007/s10142-010-0183-2⟩. ⟨hal-00964164⟩
  • Amandine Bordat, Vincent Savois, Marie Nicolas, Jerome Salse, Aurelie Chauveau, et al.. Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.. G3, Genetics Society of America, 2011, 1 (juillet), pp.93-103. ⟨10.1534/g3.111.000349⟩. ⟨hal-00964213⟩
  • Xavier Argout, Jerome Salse, Jean-Marc Aury, Mark J Guiltinan, Gaetan Droc, et al.. The genome of Theobroma cacao.. Nature Genetics, Nature Publishing Group, 2011, 43 (2), pp.101-8. ⟨10.1038/ng.736⟩. ⟨hal-00855922⟩
  • Klaus F. X. Mayer, Mihaela Martis, Pete E. Hedley, Hana Simkova, Hui Liu, et al.. Unlocking the barley genome by chromosomal and comparative genomics. The Plant cell, American Society of Plant Biologists (ASPB), 2011, 23 (4), pp.1249-1263. ⟨10.1105/tpc.110.082537⟩. ⟨hal-00964348⟩
  • Michael Abrouk, Florent Murat, Caroline Pont, Joachim Messing, Scott Jackson, et al.. Palaeogenomics of plants: synteny-based modelling of extinct ancestors.. Trends in Plant Science, Elsevier, 2010, 15 (9), pp.479-87. ⟨10.1016/j.tplants.2010.06.001⟩. ⟨hal-00681093⟩
  • Saneyoshi Ueno, Grégoire Le Provost, Valérie Léger, Christophe Klopp, Céline Noirot, et al.. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.. BMC Genomics, BioMed Central, 2010, 11, pp.650. ⟨10.1186/1471-2164-11-650⟩. ⟨hal-00645933⟩
  • Florent Murat, Jian-Hong Xu, Eric Tannier, Michael Abrouk, Nicolas Guilhot, et al.. Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.. Genome Research, Cold Spring Harbor Laboratory Press, 2010, 20 (11), pp.1545-57. ⟨10.1101/gr.109744.110⟩. ⟨hal-00680636⟩
  • Jerome Salse, Florent Murat, Michaël Abrouk, Elisabeth Chapman, Richard Sibout, et al.. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, Nature Publishing Group, 2010, 463, pp.763-768. ⟨10.1038/nature08747⟩. ⟨hal-00964370⟩
  • Jerome Salse, Michaël Abrouk, Florent Murat, Umar Masood Masood-Quraishi, Catherine Feuillet. Improved criteria and comparative genomics tool provide new insights into grass paleogenomics. Briefings in Bioinformatics, Oxford University Press (OUP), 2009, 10 (6), pp.619-630. ⟨10.1093/bib/bbp037⟩. ⟨hal-00964321⟩

Preprints, Working Papers, ...3 documents

  • Florent Murat, Noe Mbengue, Sofia Boeg Winge, Timo Trefzer, Evgeny Leushkin, et al.. The molecular evolution of spermatogenesis across mammals. 2022. ⟨hal-03516462⟩
  • Konstantin Okonechnikov, Piyush Joshi, Mari Sepp, Kevin Leiss, Ioannis Sarropoulos, et al.. Mapping pediatric brain tumors to their origins in the developing cerebellum. 2022. ⟨hal-03516521⟩
  • Mari Sepp, Kevin Leiss, Ioannis Sarropoulos, Florent Murat, Konstantin Okonechnikov, et al.. Cellular development and evolution of the mammalian cerebellum. 2022. ⟨hal-03516528⟩

Conference papers4 documents

  • Joëlle Amselem, Nicolas Francillonne, Célia Michotey, Thomas Letellier, Jean-Marc Aury, et al.. An integrated information system dedicated to oak genomics and genetics. PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides. ⟨hal-01839185⟩
  • Jerome Salse, Jean Marc Aury, Florent Murat, Sébastien Faye, Karine Labadie, et al.. Oak genome sequencing and evolution. Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p. ⟨hal-02741698⟩
  • Marina de Miguel, Jérôme Bartholome, François Ehrenmann, Florent Murat, Yoshinari Moriguchi, et al.. Evidence of intense chromosomal shuffling during conifer evolution. ProCoGen final open conference, Promoting Conifer Genomic Resources, Nov 2015, Orléans, France. 75 p. ⟨hal-02741312⟩
  • Saneyoshi Ueno, Grégoire Le Provost, Valérie Léger, Christophe Klopp, Celine Noirot, et al.. Bioinformatic analysis of Sanger and 454 ESTs in oak. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73. ⟨hal-00964385⟩

Poster communications1 document

  • Thibault Leroy, Jean Marc Aury, Catherine Bodénès, Laure Villate, Grégoire Le Provost, et al.. From whole-genome scans for divergence to the discovery of speciation genes in oaks. 15. Congress of the European Society for Evolutionary Biology (ESEB), Aug 2015, Lausanne, Switzerland. 1 p., 2015. ⟨hal-02797182⟩

Patents1 document

  • Jerome Salse, Umar Masood Quraishi, Caroline Pont, Florent Murat, Jacques Le Gouis, et al.. Improvement of the grain filling of wheat through the modulation of NADH-glutamate synthase activity. Patent n° : WO/2011/095958. 2010. ⟨hal-02809507⟩

Theses1 document

  • Florent Murat. Etude de la plasticité évolutive et structurale des génomes de plantes. Sciences du Vivant [q-bio]. Université Blaise Pascal (Clermont Ferrand 2), 2016. Français. ⟨tel-02796944⟩