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Keywords

Number of documents

51


Journal articles31 documents

  • Aarón Ayllón-Benítez, Romain Bourqui, Patricia Thebault, Fleur Mougin. GSAn: an alternative to enrichment analysis for annotating gene sets. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (2), ⟨10.1093/nargab/lqaa017⟩. ⟨hal-02509842⟩
  • Sébastien Cossin, Luc Lebrun, Grégory Lobre, Romain Loustau, Vianney Jouhet, et al.. Romedi: An Open Data Source About French Drugs on the Semantic Web. Studies in Health Technology and Informatics, IOS Press, 2019, 264, pp.79-82. ⟨10.3233/SHTI190187⟩. ⟨hal-02987843⟩
  • Sébastien Cossin, Luc Lebrun, Niamkey Aymeric, Fleur Mougin, Mathieu Lambert, et al.. SmartCRF: A Prototype to Visualize, Search and Annotate an Electronic Health Record from an i2b2 Clinical Data Warehouse. Studies in Health Technology and Informatics, IOS Press, 2019, 264, pp.1445-1446. ⟨10.3233/SHTI190476⟩. ⟨hal-02987846⟩
  • Fleur Mougin, David Auber, Romain Bourqui, Gayo Diallo, Isabelle Dutour, et al.. Visualizing omics and clinical data: which challenges for dealing with their variety?. Methods, Elsevier, 2018, 132, pp.3-18. ⟨10.1016/j.ymeth.2017.08.012⟩. ⟨hal-03160796v2⟩
  • Gayo Diallo, Fleur Mougin. Preface of the Special Issue of the Sixth French-Speaking Conference on Ontologies. Journal on Data Semantics, Springer, 2018, 7 (4), pp.189-189. ⟨hal-02047039⟩
  • Vianney Jouhet, Fleur Mougin, Bérénice Bréchat-Huet, Frantz Thiessard. Building a model for disease classification integration in oncology: an approach based on the National Cancer Institute thesaurus. Journal of Biomedical Semantics, BioMed Central, 2017, 8 (1), ⟨10.1186/s13326-017-0114-4⟩. ⟨hal-01484986⟩
  • Jean Noël Nikiema, Vianney Jouhet, Fleur Mougin. Integrating cancer diagnosis terminologies based on logical definitions of SNOMED CT concepts. Journal of Biomedical Informatics, Elsevier, 2017, 74, pp.46 - 58. ⟨10.1016/j.jbi.2017.08.013⟩. ⟨hal-01591686⟩
  • Thierry Hamon, Natalia Grabar, Fleur Mougin. Querying biomedical Linked Data with natural language questions. Semantic Web – Interoperability, Usability, Applicability, IOS Press, 2017, 8, pp.581-599. ⟨10.3233/SW-160244⟩. ⟨hal-01426686⟩
  • Khadim Dramé, Fleur Mougin, Gayo Diallo. Large scale biomedical texts classification: a kNN and an ESA-based approaches. Journal of Biomedical Semantics, BioMed Central, 2016. ⟨hal-01329565⟩
  • Fleur Mougin. Identifying redundant and missing relations in the Gene Ontology. Studies in Health Technology and Informatics, IOS Press, 2015, 210, pp.195-9. ⟨hal-02987887⟩
  • Khadim Dramé, Gayo Diallo, Fleur Delva, Jean François Dartigues, Evelyne Mouillet, et al.. Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: An application to Alzheimer’s disease. Journal of Biomedical Informatics, Elsevier, 2014, 48, pp.171-182. ⟨10.1016/j.jbi.2013.12.013⟩. ⟨hal-01135047⟩
  • Fleur Mougin, Natalia Grabar. Auditing the multiply-related concepts within the UMLS. Journal of the American Medical Informatics Association, BMJ Publishing Group, 2014, 21 (e2), pp.185-193. ⟨10.1136/amiajnl-2013-002227⟩. ⟨hal-01135044⟩
  • P. Avillach, P. M. Coloma, R. Gini, M. Schuemie, Fleur Mougin, et al.. Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. Journal of the American Medical Informatics Association, BMJ Publishing Group, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩. ⟨hal-01135052⟩
  • Fleur Mougin, Natalia Grabar. Using a Cross-Language Approach to Acquire New Mappings between Two Biomedical Terminologies. Lecture Notes in Computer Science, Springer, 2013, Artificial Intelligence in Medicine, 7885, pp.221-226. ⟨10.1007/978-3-642-38326-7_33⟩. ⟨hal-01135062⟩
  • P. Avillach, Jean-Charles Dufour, G. Diallo, F. Salvo, M. Joubert, et al.. Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project. Journal of the American Medical Informatics Association, BMJ Publishing Group, 2013, 20 (3), pp.446-452. ⟨10.1136/amiajnl-2012-001083⟩. ⟨hal-01135051⟩
  • Frantz Thiessard, Fleur Mougin, Gayo Diallo, Vianney Jouhet, Sébastien Cossin, et al.. RAVEL: retrieval and visualization in ELectronic health records. Studies in Health Technology and Informatics, IOS Press, 2012, 180, pp.194-8. ⟨hal-02987815⟩
  • Khadim Drame, Gayo Diallo, Fleur Mougin. Towards a bilingual Alzheimer's disease terminology acquisition using a parallel corpus. Studies in Health Technology and Informatics, IOS Press, 2012, 180, pp.179-83. ⟨hal-02987809⟩
  • Fleur Mougin, Marie Dupuch, Natalia Grabar. Improving the Mapping between MedDRA and SNOMED CT. Lecture Notes in Computer Science, Springer, 2011, Artificial Intelligence in Medicine, 6747, pp.220-224. ⟨10.1007/978-3-642-22218-4_27⟩. ⟨hal-01135071⟩
  • Fleur Mougin, Olivier Bodenreider, Anita Burgun. Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications.. AMIA .. Annual Symposium proceedings [electronic resource] / AMIA Symposium. AMIA Symposium., 2010, 2010, pp.527-31. ⟨hal-00748898⟩
  • Anita Burgun, Fleur Mougin, Olivier Bodenreider. Two approaches to integrating phenotype and clinical information. AMIA Annual Symposium Proceedings, AMIA, 2009, pp.75-9. ⟨hal-02987803⟩
  • Fleur Mougin, Olivier Bodenreider, Anita Burgun. Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. Journal of Biomedical Informatics, Elsevier, 2009, 42 (3), pp.440-451. ⟨10.1016/j.jbi.2009.03.008⟩. ⟨hal-01135073⟩
  • Fleur Mougin, Olivier Bodenreider. Auditing the NCI thesaurus with semantic web technologies. AMIA Annual Symposium Proceedings, AMIA, 2008, pp.500-4. ⟨hal-02987793⟩
  • Valérie Bertaud, Jérémy Lasbleiz, Fleur Mougin, Anita Burgun, Régis Duvauferrier. A unified representation of findings in clinical radiology using the UMLS and DICOM. International Journal of Medical Informatics, Elsevier, 2008, 77 (9), pp.621-629. ⟨10.1016/j.ijmedinf.2007.11.003⟩. ⟨hal-02987785⟩
  • Fleur Mougin, Anita Burgun, Olivier Bodenreider. Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinformatics, BioMed Central, 2006, 7 (S3), pp.S6. ⟨10.1186/1471-2105-7-S3-S6⟩. ⟨hal-02987759⟩
  • Fleur Mougin, Anita Burgun, Olivier Bodenreider. Using WordNet to improve the mapping of data elements to UMLS for data sources integration. AMIA Annual Symposium Proceedings, AMIA, 2006, pp.574-8. ⟨hal-02987780⟩
  • Nicolas Garcelon, Fleur Mougin, Cédric Bousquet, Anita Burgun. Evidence in pharmacovigilance: extracting adverse drug reactions articles from MEDLINE to link them to case databases. Studies in Health Technology and Informatics, IOS Press, 2006, 124, pp.528-33. ⟨hal-02987766⟩
  • Anita Burgun, Olivier Bodenreider, Fleur Mougin. Classifying diseases with respect to anatomy: a study in SNOMED CT. AMIA Annual Symposium Proceedings, AMIA, 2005, pp.91-5. ⟨hal-02987756⟩
  • Marc Cuggia, Fleur Mougin, Pierre Le Beux. Indexing method of digital audiovisual medical resources with semantic Web integration. International Journal of Medical Informatics, Elsevier, 2005, 74 (2-4), pp.169-177. ⟨10.1016/j.ijmedinf.2004.04.027⟩. ⟨hal-02987735⟩
  • Fleur Mougin, Olivier Bodenreider. Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal. AMIA Annual Symposium Proceedings, AMIA, 2005, pp.550-4. ⟨hal-02987753⟩
  • Fleur Mougin, Anita Burgun, Olivier Loréal, Pierre Le Beux. Towards the automatic generation of biomedical sources schema. Studies in Health Technology and Informatics, IOS Press, 2004, 107 (Pt 2), pp.783-7. ⟨hal-02987859⟩
  • Fleur Mougin, Marc Cuggia, Pierre Le Beux. Development of an indexing search engine for the UMVF: proposal for an indexing method based on Dublin Core and XML. Studies in Health Technology and Informatics, IOS Press, 2003, 95, pp.727-31. ⟨hal-02987871⟩

Conference papers14 documents

  • Frédéric Lalanne, Pierrick Bedouch, Cyril Simonnet, Vincent Depras, Georgeta Bordea, et al.. Visualizing food-drug interactions in the Thériaque database. 31st Medical Informatics Europe Conference (MIE), May 2021, Athens (virtual), Greece. ⟨hal-03185958⟩
  • Georgeta Bordea, Jean Nikiema, Romain Griffier, Thierry Hamon, Fleur Mougin. FIDEO: Food Interactions with Drugs Evidence Ontology. 11th International Conference on Biomedical Ontologies, Sep 2020, Bolzano (virtual), Italy. ⟨hal-03185166⟩
  • Georgeta Bordea, Stefano Faralli, Fleur Mougin, Paul Buitelaar, Gayo Diallo. Evaluation Dataset and Methodology for Extracting Application-Specific Taxonomies from the Wikipedia Knowledge Graph. LREC'2020, May 2020, Marseille, France. ⟨hal-02614678⟩
  • Tsanta Randriatsitohaina, Cyril Grouin, Pierrick Bedouch, Georgeta Bordea, Amélie Daveluy, et al.. Annotations d'entités et de relations sur des résumés d'articles scientifiques pour la détection d'interactions entre aliments et médicaments. TALMED 2019, Aug 2019, Lyon, France. ⟨hal-02430510⟩
  • Aarón Ayllón-Benítez, Fleur Mougin, Jesualdo Tomás Fernández-Breis, Manuel Quesada Martinez, Patricia Thebault, et al.. Deciphering gene sets annotations with ontology based visualization. 21 st International conference information visualisation, Jul 2017, London, United Kingdom. ⟨hal-01524572⟩
  • Thierry Hamon, Tabanou Vincent, Fleur Mougin, Natalia Grabar, Frantz Thiessard. POMELO: Medline corpus with manually annotated food-drug interactions. Recent Advances in Natural Language Processing (RANLP), Sep 2017, Varna, Bulgaria. pp.73-80. ⟨hal-01591691⟩
  • Elise Bigeard, Vianney Jouhet, Fleur Mougin, Frantz Thiessard, Natalia Grabar. Automatic extraction of numerical values from unstructured data in EHRs. Stud Health Technol Inform. 2015, May 2015, Madrid, Spain. pp.50-54. ⟨hal-01484996⟩
  • Khadim Dramé, Fleur Mougin, Gayo Diallo. A k-nearest neighbor based method for improving large scale biomedical document indexing. 6th International Symposium on Semantic Mining in Biomedicine (SMBM), Oct 2014, Aveiro, Portugal. pp.19-26. ⟨hal-01135083⟩
  • Bérénice Bréchat-Huet, Fleur Mougin, Frantz Thiessard, Vianney Jouhet. Mapping de terminologies diagnostiques en cancérologie par l'intermédiaire du NCI Metathesaurus. JFIM 2014, Jun 2014, Fès, Maroc. pp.34-43. ⟨hal-01414274⟩
  • Thierry Hamon, Natalia Grabar, Fleur Mougin. Natural Language Question Analysis for Querying Biomedical Linked Data. Proceedings of the 1st Natural Language Interfaces for Web of Data workshop (NLIWoD) - ISWC, Oct 2014, Trentino, Italy. ⟨hal-01135078⟩
  • Fleur Mougin, Anita Burgun, Olivier Bodenreider. Comparing drug-class membership in ATC and NDF-RT. ACM International Health Informatics Symposium, Jan 2012, Miami, United States. pp.437-444, ⟨10.1145/2110363.2110413⟩. ⟨hal-02987907⟩
  • Natalia Grabar, Marie Dupuch, Fleur Mougin. Dommages collatéraux de la fusion de terminologies. International Conference on Terminology and Artificial Intelligence, Nov 2011, Paris, France. pp.10-16. ⟨hal-02987948⟩
  • Olivier Bodenreider, Fleur Mougin, Anita Burgun. Automatic determination of anticoagulation status with NDF-RT. 13th ISMB'2010 SIG meeting "Bio-ontologies", 2010, Aberystwyth, United Kingdom. pp.140-143. ⟨hal-02987935⟩
  • Fleur Mougin, Julie Chabalier, Olivier Bodenreider, Anita Burgun. Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes. Ingénierie des Connaissances 2007, Jul 2007, Grenoble, France. pp.37-48. ⟨hal-00380907⟩

Poster communications2 documents

  • Aarón Ayllón-Benítez, Patricia Thébault, Fleur Mougin. GSAn : An alternative to gene set enrichment analysis. Journées Ouvertes de Biologie Informatique et Matématiques, Jul 2019, Nantes, France. ⟨hal-02401873⟩
  • Aarón Ayllón-Benítez, Fleur Mougin, Manuel Quesada Martinez, Jesualdo Tomás Fernández Breis, Romain Bourqui, et al.. Deciphering functional annotation of multiple gene sets with MOTVIS. Jornées ouvertes de biologie informatique et matematiques, Jul 2018, Marseille, France. ⟨hal-02401858⟩

Book sections2 documents

  • Paul Avillach, Fleur Mougin, Michel Jouberr, Frantz Thiessard, Antoine Pariente, et al.. Approche sémantique pour l’identification homogène d’effets indésirables et de médicaments dans huit bases de données de patients: une contribution au projet européen eu-ADR. Informatique et santé, 17, pp.251-262, 2009, ⟨10.1007/978-2-287-99305-3_23⟩. ⟨hal-02987957⟩
  • Fleur Mougin, Anita Burgun, Olivier Bodenreider, Julie Chabalier, Olivier Loréal, et al.. Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. Lecture Notes in Computer Science, vol. 5109, pp.61-76, 2008, ⟨10.1007/978-3-540-69828-9_7⟩. ⟨hal-02987891⟩

Theses1 document

  • Fleur Mougin. Conception d’un modèle Web sémantique appliqué à la génomique fonctionnelle. Bio-informatique [q-bio.QM]. Université de Rennes 1, 2006. Français. ⟨tel-02402050⟩

Habilitation à diriger des recherches1 document

  • Fleur Mougin. Enjeux liés aux ressources termino-ontologiques en santé. Intelligence artificielle [cs.AI]. Université de Bordeaux, 2019. ⟨tel-02379486v2⟩