Fleur Mougin

Documents

Publications

	The OREGANO knowledge graph for computational drug repurposing Marina Boudin , Gayo Diallo , Martin Drancé , Fleur Mougin Scientific Data , 2023, 10 (1), pp.871. ⟨10.1038/s41597-023-02757-0⟩ Article dans une revue hal-04382989v1
	Indexing Imaging Reports for Data Sharing: A Study of Mapping Using RadLex Playbook and LOINC Pierre Lemordant , Fleur Mougin , Sandie Cabon , Yves Gandon , Guillaume Bouzillé Studies in Health Technology and Informatics, 2022, 294, pp.312-316. ⟨10.3233/SHTI220465⟩ Article dans une revue hal-03689920v1
	GSAn: an alternative to enrichment analysis for annotating gene sets Aarón Ayllón-Benítez , Romain Bourqui , Patricia Thebault , Fleur Mougin NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa017⟩ Article dans une revue hal-02509842v1
	SmartCRF: A Prototype to Visualize, Search and Annotate an Electronic Health Record from an i2b2 Clinical Data Warehouse Sébastien Cossin , Luc Lebrun , Niamkey Aymeric , Fleur Mougin , Mathieu Lambert Studies in Health Technology and Informatics, 2019, 264, pp.1445-1446. ⟨10.3233/SHTI190476⟩ Article dans une revue hal-02987846v1
	Romedi: An Open Data Source About French Drugs on the Semantic Web Sébastien Cossin , Luc Lebrun , Grégory Lobre , Romain Loustau , Vianney Jouhet Studies in Health Technology and Informatics, 2019, 264, pp.79-82. ⟨10.3233/SHTI190187⟩ Article dans une revue hal-02987843v1
	Visualizing omics and clinical data: which challenges for dealing with their variety? Fleur Mougin , David Auber , Romain Bourqui , Gayo Diallo , Isabelle Dutour Methods, 2018, 132, pp.3-18. ⟨10.1016/j.ymeth.2017.08.012⟩ Article dans une revue hal-03160796v2
	Preface of the Special Issue of the Sixth French-Speaking Conference on Ontologies Gayo Diallo , Fleur Mougin Journal on Data Semantics, 2018, 7 (4), pp.189-189 Article dans une revue hal-02047039v1
	Querying biomedical Linked Data with natural language questions Thierry Hamon , Natalia Grabar , Fleur Mougin Semantic Web – Interoperability, Usability, Applicability, 2017, 8, pp.581-599. ⟨10.3233/SW-160244⟩ Article dans une revue hal-01426686v1
	Integrating cancer diagnosis terminologies based on logical definitions of SNOMED CT concepts Jean Noël Nikiema , Vianney Jouhet , Fleur Mougin Journal of Biomedical Informatics, 2017, 74, pp.46 - 58. ⟨10.1016/j.jbi.2017.08.013⟩ Article dans une revue hal-01591686v1
	Building a model for disease classification integration in oncology: an approach based on the National Cancer Institute thesaurus Vianney Jouhet , Fleur Mougin , Bérénice Bréchat-Huet , Frantz Thiessard Journal of Biomedical Semantics, 2017, 8 (1), ⟨10.1186/s13326-017-0114-4⟩ Article dans une revue hal-01484986v1
	Large scale biomedical texts classification: a kNN and an ESA-based approaches Khadim Dramé , Fleur Mougin , Gayo Diallo Journal of Biomedical Semantics, 2016 Article dans une revue hal-01329565v1
	Identifying redundant and missing relations in the Gene Ontology Fleur Mougin Studies in Health Technology and Informatics, 2015, 210, pp.195-9 Article dans une revue hal-02987887v1
	Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: An application to Alzheimer’s disease Khadim Dramé , Gayo Diallo , Fleur Delva , Jean François Dartigues , Evelyne Mouillet Journal of Biomedical Informatics, 2014, 48, pp.171-182. ⟨10.1016/j.jbi.2013.12.013⟩ Article dans une revue hal-01135047v1
	Auditing the multiply-related concepts within the UMLS Fleur Mougin , Natalia Grabar Journal of the American Medical Informatics Association, 2014, 21 (e2), pp.185-193. ⟨10.1136/amiajnl-2013-002227⟩ Article dans une revue hal-01135044v1
	Using a Cross-Language Approach to Acquire New Mappings between Two Biomedical Terminologies Fleur Mougin , Natalia Grabar Lecture Notes in Computer Science, 2013, Artificial Intelligence in Medicine, 7885, pp.221-226. ⟨10.1007/978-3-642-38326-7_33⟩ Article dans une revue hal-01135062v1
	Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project P. Avillach , P. M. Coloma , R. Gini , M. Schuemie , Fleur Mougin Journal of the American Medical Informatics Association, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩ Article dans une revue hal-01135052v1
	Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project P. Avillach , Jean-Charles Dufour , G. Diallo , F. Salvo , M. Joubert Journal of the American Medical Informatics Association, 2013, 20 (3), pp.446-452. ⟨10.1136/amiajnl-2012-001083⟩ Article dans une revue hal-01135051v1
	RAVEL: retrieval and visualization in ELectronic health records Frantz Thiessard , Fleur Mougin , Gayo Diallo , Vianney Jouhet , Sébastien Cossin Studies in Health Technology and Informatics, 2012, 180, pp.194-8 Article dans une revue hal-02987815v1
	RAVEL: retrieval and visualization in ELectronic health records Frantz Thiessard , Fleur Mougin , Gayo Diallo , Vianney Jouhet , Sébastien Cossin Studies in Health Technology and Informatics, 2012, 180, pp.194-8 Article dans une revue hal-04270539v1
	Towards a bilingual Alzheimer's disease terminology acquisition using a parallel corpus Khadim Drame , Gayo Diallo , Fleur Mougin Studies in Health Technology and Informatics, 2012, 180, pp.179-83 Article dans une revue hal-02987809v1
	Improving the Mapping between MedDRA and SNOMED CT Fleur Mougin , Marie Dupuch , Natalia Grabar Lecture Notes in Computer Science, 2011, Artificial Intelligence in Medicine, 6747, pp.220-224. ⟨10.1007/978-3-642-22218-4_27⟩ Article dans une revue hal-01135071v1
	Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications. Fleur Mougin , Olivier Bodenreider , Anita Burgun AMIA .. Annual Symposium proceedings [electronic resource] / AMIA Symposium. AMIA Symposium., 2010, 2010, pp.527-31 Article dans une revue hal-00748898v1
	Two approaches to integrating phenotype and clinical information Anita Burgun , Fleur Mougin , Olivier Bodenreider AMIA Annual Symposium Proceedings, 2009, pp.75-9 Article dans une revue hal-02987803v1
	Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS Fleur Mougin , Olivier Bodenreider , Anita Burgun Journal of Biomedical Informatics, 2009, 42 (3), pp.440-451. ⟨10.1016/j.jbi.2009.03.008⟩ Article dans une revue hal-01135073v1
	A unified representation of findings in clinical radiology using the UMLS and DICOM Valérie Bertaud , Jérémy Lasbleiz , Fleur Mougin , Anita Burgun , Régis Duvauferrier International Journal of Medical Informatics, 2008, 77 (9), pp.621-629. ⟨10.1016/j.ijmedinf.2007.11.003⟩ Article dans une revue hal-02987785v1
	Auditing the NCI thesaurus with semantic web technologies Fleur Mougin , Olivier Bodenreider AMIA Annual Symposium Proceedings, 2008, pp.500-4 Article dans une revue hal-02987793v1
	Mapping data elements to terminological resources for integrating biomedical data sources Fleur Mougin , Anita Burgun , Olivier Bodenreider BMC Bioinformatics, 2006, 7 (S3), pp.S6. ⟨10.1186/1471-2105-7-S3-S6⟩ Article dans une revue hal-02987759v1
	Using WordNet to improve the mapping of data elements to UMLS for data sources integration Fleur Mougin , Anita Burgun , Olivier Bodenreider AMIA Annual Symposium Proceedings, 2006, pp.574-8 Article dans une revue hal-02987780v1
	Evidence in pharmacovigilance: extracting adverse drug reactions articles from MEDLINE to link them to case databases Nicolas Garcelon , Fleur Mougin , Cédric Bousquet , Anita Burgun Studies in Health Technology and Informatics, 2006, 124, pp.528-33 Article dans une revue hal-02987766v1
	Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal Fleur Mougin , Olivier Bodenreider AMIA Annual Symposium Proceedings, 2005, pp.550-4 Article dans une revue hal-02987753v1
	Indexing method of digital audiovisual medical resources with semantic Web integration Marc Cuggia , Fleur Mougin , Pierre Le Beux International Journal of Medical Informatics, 2005, 74 (2-4), pp.169-177. ⟨10.1016/j.ijmedinf.2004.04.027⟩ Article dans une revue hal-02987735v1
	Classifying diseases with respect to anatomy: a study in SNOMED CT Anita Burgun , Olivier Bodenreider , Fleur Mougin AMIA Annual Symposium Proceedings, 2005, pp.91-5 Article dans une revue hal-02987756v1
	Towards the automatic generation of biomedical sources schema Fleur Mougin , Anita Burgun , Olivier Loréal , Pierre Le Beux Studies in Health Technology and Informatics, 2004, 107 (Pt 2), pp.783-7 Article dans une revue hal-02987859v1
	Development of an indexing search engine for the UMVF: proposal for an indexing method based on Dublin Core and XML Fleur Mougin , Marc Cuggia , Pierre Le Beux Studies in Health Technology and Informatics, 2003, 95, pp.727-31 Article dans une revue hal-02987871v1

	Visualizing food-drug interactions in the Thériaque database Frédéric Lalanne , Pierrick Bedouch , Cyril Simonnet , Vincent Depras , Georgeta Bordea 31st Medical Informatics Europe Conference (MIE), May 2021, Athens (virtual), Greece Communication dans un congrès hal-03185958v1
	Evaluation Dataset and Methodology for Extracting Application-Specific Taxonomies from the Wikipedia Knowledge Graph Georgeta Bordea , Stefano Faralli , Fleur Mougin , Paul Buitelaar , Gayo Diallo LREC'2020, May 2020, Marseille, France Communication dans un congrès hal-02614678v1
	FIDEO: Food Interactions with Drugs Evidence Ontology Georgeta Bordea , Jean Nikiema , Romain Griffier , Thierry Hamon , Fleur Mougin 11th International Conference on Biomedical Ontologies, Sep 2020, Bolzano (virtual), Italy Communication dans un congrès hal-03185166v1
	Representing Foods Potentially Involved in Food-Drug Interactions using FoodOn (FIDEO) Georgeta Bordea , Thierry Hamon , Fleur Mougin ICBO 2020 Integrated Food Ontology Workshop (IFOW), Sep 2020, Bolzano (virtual), Italy Communication dans un congrès hal-03738721v1
	Annotations d'entités et de relations sur des résumés d'articles scientifiques pour la détection d'interactions entre aliments et médicaments Tsanta Randriatsitohaina , Cyril Grouin , Pierrick Bedouch , Georgeta Bordea , Amélie Daveluy TALMED 2019, Aug 2019, Lyon, France Communication dans un congrès hal-02430510v1
	POMELO: Medline corpus with manually annotated food-drug interactions Thierry Hamon , Tabanou Vincent , Fleur Mougin , Natalia Grabar , Frantz Thiessard Recent Advances in Natural Language Processing (RANLP), Sep 2017, Varna, Bulgaria. pp.73-80 Communication dans un congrès hal-01591691v1
	Deciphering gene sets annotations with ontology based visualization Aarón Ayllón-Benítez , Fleur Mougin , Jesualdo Tomás Fernández-Breis , Manuel Quesada Martinez , Patricia Thebault 21 st International conference information visualisation, Jul 2017, London, United Kingdom Communication dans un congrès hal-01524572v1
	Automatic extraction of numerical values from unstructured data in EHRs Elise Bigeard , Vianney Jouhet , Fleur Mougin , Frantz Thiessard , Natalia Grabar Stud Health Technol Inform. 2015, May 2015, Madrid, Spain. pp.50-54 Communication dans un congrès hal-01484996v1
	Natural Language Question Analysis for Querying Biomedical Linked Data Thierry Hamon , Natalia Grabar , Fleur Mougin Proceedings of the 1st Natural Language Interfaces for Web of Data workshop (NLIWoD) - ISWC, Oct 2014, Trentino, Italy Communication dans un congrès hal-01135078v1
	A k-nearest neighbor based method for improving large scale biomedical document indexing Khadim Dramé , Fleur Mougin , Gayo Diallo 6th International Symposium on Semantic Mining in Biomedicine (SMBM), Oct 2014, Aveiro, Portugal. pp.19-26 Communication dans un congrès hal-01135083v1
	Mapping de terminologies diagnostiques en cancérologie par l'intermédiaire du NCI Metathesaurus Bérénice Bréchat-Huet , Fleur Mougin , Frantz Thiessard , Vianney Jouhet JFIM 2014, Jun 2014, Fès, Maroc. pp.34-43 Communication dans un congrès hal-01414274v1
	Comparing drug-class membership in ATC and NDF-RT Fleur Mougin , Anita Burgun , Olivier Bodenreider ACM International Health Informatics Symposium, Jan 2012, Miami, United States. pp.437-444, ⟨10.1145/2110363.2110413⟩ Communication dans un congrès hal-02987907v1
	Dommages collatéraux de la fusion de terminologies Natalia Grabar , Marie Dupuch , Fleur Mougin International Conference on Terminology and Artificial Intelligence, Nov 2011, Paris, France. pp.10-16 Communication dans un congrès hal-02987948v1
	Automatic determination of anticoagulation status with NDF-RT Olivier Bodenreider , Fleur Mougin , Anita Burgun 13th ISMB'2010 SIG meeting "Bio-ontologies", 2010, Aberystwyth, United Kingdom. pp.140-143 Communication dans un congrès hal-02987935v1
	Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes Fleur Mougin , Julie Chabalier , Olivier Bodenreider , Anita Burgun Ingénierie des Connaissances 2007, Jul 2007, Grenoble, France. pp.37-48 Communication dans un congrès hal-00380907v1

	GSAn : An alternative to gene set enrichment analysis Aarón Ayllón-Benítez , Patricia Thébault , Fleur Mougin Journées Ouvertes de Biologie Informatique et Matématiques, Jul 2019, Nantes, France Poster de conférence hal-02401873v1
	Deciphering functional annotation of multiple gene sets with MOTVIS Aarón Ayllón-Benítez , Fleur Mougin , Manuel Quesada Martinez , Jesualdo Tomás Fernández Breis , Romain Bourqui Jornées ouvertes de biologie informatique et matematiques, Jul 2018, Marseille, France Poster de conférence hal-02401858v1

	Approche sémantique pour l’identification homogène d’effets indésirables et de médicaments dans huit bases de données de patients: une contribution au projet européen eu-ADR Paul Avillach , Fleur Mougin , Michel Jouberr , Frantz Thiessard , Antoine Pariente Informatique et santé, 17, pp.251-262, 2009, ⟨10.1007/978-2-287-99305-3_23⟩ Chapitre d'ouvrage hal-02987957v1
	Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System Fleur Mougin , Anita Burgun , Olivier Bodenreider , Julie Chabalier , Olivier Loréal Lecture Notes in Computer Science, vol. 5109, pp.61-76, 2008, ⟨10.1007/978-3-540-69828-9_7⟩ Chapitre d'ouvrage hal-02987891v1

	Conception d’un modèle Web sémantique appliqué à la génomique fonctionnelle Fleur Mougin Bio-informatique [q-bio.QM]. Université de Rennes 1, 2006. Français. ⟨NNT : ⟩ Thèse tel-02402050v1

	Enjeux liés aux ressources termino-ontologiques en santé Fleur Mougin Intelligence artificielle [cs.AI]. Université de Bordeaux, 2019 HDR tel-02379486v2

Fleur Mougin

Publications

The OREGANO knowledge graph for computational drug repurposing

Indexing Imaging Reports for Data Sharing: A Study of Mapping Using RadLex Playbook and LOINC

GSAn: an alternative to enrichment analysis for annotating gene sets

SmartCRF: A Prototype to Visualize, Search and Annotate an Electronic Health Record from an i2b2 Clinical Data Warehouse

Romedi: An Open Data Source About French Drugs on the Semantic Web

Visualizing omics and clinical data: which challenges for dealing with their variety?

Preface of the Special Issue of the Sixth French-Speaking Conference on Ontologies

Querying biomedical Linked Data with natural language questions

Integrating cancer diagnosis terminologies based on logical definitions of SNOMED CT concepts

Building a model for disease classification integration in oncology: an approach based on the National Cancer Institute thesaurus

Large scale biomedical texts classification: a kNN and an ESA-based approaches

Identifying redundant and missing relations in the Gene Ontology

Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: An application to Alzheimer’s disease

Auditing the multiply-related concepts within the UMLS

Using a Cross-Language Approach to Acquire New Mappings between Two Biomedical Terminologies

Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project

Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project

RAVEL: retrieval and visualization in ELectronic health records

RAVEL: retrieval and visualization in ELectronic health records

Towards a bilingual Alzheimer's disease terminology acquisition using a parallel corpus

Improving the Mapping between MedDRA and SNOMED CT

Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications.

Two approaches to integrating phenotype and clinical information

Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS

A unified representation of findings in clinical radiology using the UMLS and DICOM

Auditing the NCI thesaurus with semantic web technologies

Mapping data elements to terminological resources for integrating biomedical data sources

Using WordNet to improve the mapping of data elements to UMLS for data sources integration

Evidence in pharmacovigilance: extracting adverse drug reactions articles from MEDLINE to link them to case databases

Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal

Indexing method of digital audiovisual medical resources with semantic Web integration

Classifying diseases with respect to anatomy: a study in SNOMED CT

Towards the automatic generation of biomedical sources schema

Development of an indexing search engine for the UMVF: proposal for an indexing method based on Dublin Core and XML

Visualizing food-drug interactions in the Thériaque database

Evaluation Dataset and Methodology for Extracting Application-Specific Taxonomies from the Wikipedia Knowledge Graph

FIDEO: Food Interactions with Drugs Evidence Ontology

Representing Foods Potentially Involved in Food-Drug Interactions using FoodOn (FIDEO)

Annotations d'entités et de relations sur des résumés d'articles scientifiques pour la détection d'interactions entre aliments et médicaments

POMELO: Medline corpus with manually annotated food-drug interactions

Deciphering gene sets annotations with ontology based visualization

Automatic extraction of numerical values from unstructured data in EHRs

Natural Language Question Analysis for Querying Biomedical Linked Data

A k-nearest neighbor based method for improving large scale biomedical document indexing

Mapping de terminologies diagnostiques en cancérologie par l'intermédiaire du NCI Metathesaurus

Comparing drug-class membership in ATC and NDF-RT

Dommages collatéraux de la fusion de terminologies

Automatic determination of anticoagulation status with NDF-RT

Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes

GSAn : An alternative to gene set enrichment analysis

Deciphering functional annotation of multiple gene sets with MOTVIS

Approche sémantique pour l’identification homogène d’effets indésirables et de médicaments dans huit bases de données de patients: une contribution au projet européen eu-ADR

Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System

Conception d’un modèle Web sémantique appliqué à la génomique fonctionnelle

Enjeux liés aux ressources termino-ontologiques en santé