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Number of documents

52

Fred JEAN - Univ. of Brest, France.


Professor, University of Brest, France.

My research is about marine ecology, bioenergetics and ecophysiology of benthic invertebrates, mainly molluscs so far.


Journal articles47 documents

  • Arturo Aguirre-Velarde, Gérard Thouzeau, Fred Jean, Jaime Mendo, Rosa Cueto-Vega, et al.. Chronic and severe hypoxic conditions in Paracas Bay, Pisco, Peru: Consequences on scallop growth, reproduction, and survival. Aquaculture, Elsevier, 2019, 512, pp.734259. ⟨10.1016/j.aquaculture.2019.734259⟩. ⟨hal-02405983⟩
  • Romain Lavaud, Eric Rannou, Jonathan Flye-Sainte-Marie, Fred Jean. Reconstructing physiological history from growth, a method to invert DEB models. Journal of Sea Research, Elsevier, 2019, 143, pp.183-192. ⟨10.1016/j.seares.2018.07.007⟩. ⟨hal-02114581⟩
  • Romain Lavaud, Aurelie Jolivet, Eric Rannou, Fred Jean, Oivind Strand, et al.. What can the shell tell about the scallop? Using growth trajectories along latitudinal and bathymetric gradients to reconstruct physiological history with DEB theory. Journal of Sea Research, Elsevier, 2019, 143, pp.193-206. ⟨10.1016/j.seares.2018.04.001⟩. ⟨hal-02871386⟩
  • Arturo Aguirre-Velarde, Laure Pecquerie, Fred Jean, Gérard Thouzeau, Jonathan Flye-Sainte-Marie. Predicting the energy budget of the scallop Argopecten purpuratus in an oxygen–limiting environment. Journal of Sea Research, Elsevier, 2019, 143, pp.254-261. ⟨10.1016/j.seares.2018.09.011⟩. ⟨hal-02114544⟩
  • Emilien Pousse, Jonathan Flye-Sainte-Marie, Marianne Alunno-Bruscia, Helene Hegaret, Eric Rannou, et al.. Modelling paralytic shellfish toxins (PST) accumulation in Crassostrea gigas by using Dynamic Energy Budgets (DEB). Journal of Sea Research, Elsevier, 2019, 143, pp.152-164. ⟨10.1016/j.seares.2018.09.002⟩. ⟨hal-02114653⟩
  • Nikolaos Alexandridis, Cedric Bacher, Nicolas Desroy, Fred Jean. Individual-based simulation of the spatial and temporal dynamics of macroinvertebrate functional groups provides insights into benthic community assembly mechanisms. PeerJ, PeerJ, 2018, 6, pp.e5038. ⟨10.7717/peerj.5038⟩. ⟨hal-02614270⟩
  • Emilien Pousse, Jonathan Flye-Sainte-Marie, Marianne Alunno-Bruscia, Helene Hegaret, Frédéric Jean. Sources of paralytic shellfish toxin accumulation variability in the Pacific oyster Crassostrea gigas. Toxicon, Elsevier, 2018, 144, pp.14-22. ⟨10.1016/j.toxicon.2017.12.050⟩. ⟨hal-02324600⟩
  • Romain Lavaud, Sébastien Artigaud, Fabienne Le Grand, Anne Donval, Philippe Soudant, et al.. New insights into the seasonal feeding ecology of Pecten maximus using pigments, fatty acids and sterols analyses. Marine Ecology Progress Series, Inter Research, 2018, 590, pp.109-129. ⟨10.3354/meps12476⟩. ⟨hal-02324241⟩
  • Arturo Aguirre-Velarde, Fred Jean, Gérard Thouzeau, Jonathan Flye-Sainte-Marie. Feeding behaviour and growth of the Peruvian scallop ( Argopecten purpuratus ) under daily cyclic hypoxia conditions. Journal of Sea Research, Elsevier, 2018, 131, pp.85-94. ⟨10.1016/j.seares.2017.11.001⟩. ⟨hal-02405958⟩
  • Olivier Ragueneau, Mélanie Raimonet, Camille Mazé, Jennifer Coston-Guarini, Laurent Chauvaud, et al.. The Impossible Sustainability of the Bay of Brest? Fifty Years of Ecosystem Changes, Interdisciplinary Knowledge Construction and Key Questions at the Science-Policy-Community Interface. Frontiers in Marine Science, Frontiers Media, 2018, 5, ⟨10.3389/fmars.2018.00124⟩. ⟨hal-01769744⟩
  • Nikolaos Alexandridis, Jeffrey M. Dambacher, Fred Jean, Nicolas Desroy, Cedric Bacher. Qualitative modelling of functional relationships in marine benthic communities. Ecological Modelling, Elsevier, 2017, 360, pp.300-312. ⟨10.1016/j.ecolmodel.2017.07.021⟩. ⟨hal-02571120⟩
  • Clément Le Goff, Romain Lavaud, Philippe Cugier, Fred Jean, Jonathan Flye-Sainte-Marie, et al.. A coupled biophysical model for the distribution of the great scallop Pecten maximus in the English Channel. Journal of Marine Systems, Elsevier, 2017, 167, pp.55-67. ⟨10.1016/j.jmarsys.2016.10.013⟩. ⟨hal-01394278⟩
  • Nikolaos Alexandridis, Cédric Bacher, Nicolas Desroy, Fred Jean. Building functional groups of marine benthic macroinvertebrates on the basis of general community assembly mechanisms. Journal of Sea Research, Elsevier, 2017, 121, pp.59-70. ⟨10.1016/j.seares.2017.01.007⟩. ⟨hal-01510353⟩
  • Arturo Aguirre-Velarde, Fred Jean, Gérard Thouzeau, Jonathan Flye-Sainte-Marie. Effects of progressive hypoxia on oxygen uptake in juveniles of the Peruvian scallop, Argopecten purpuratus (Lamarck, 1819). Aquaculture, Elsevier, 2016, 451, pp.385-389. ⟨10.1016/j.aquaculture.2015.07.030⟩. ⟨hal-01282771⟩
  • Katherine Mcfarland, Fred Jean, Julien Thébault, Aswani K Volety. Potential impacts of blooms of the toxic dinoflagellate Karenia brevis on the growth, survival and juvenile recruitment of the non-native green mussel Perna viridis in southeastern United States. Toxicon, Elsevier, 2016, 109, pp.94-102. ⟨10.1016/j.toxicon.2015.11.017⟩. ⟨hal-01239448⟩
  • Katherine Mcfarland, Philippe Soudant, Fred Jean, Aswani Volety. Reproductive strategy of the invasive green mussel may result in increased competition with native fauna in the southeastern United States. Aquatic Invasions, 2016, 11 (4), pp.411-423. ⟨10.3391/ai.2016.11.4.06⟩. ⟨hal-01395750⟩
  • Sébastien Artigaud, Joëlle Richard, Michael As Thorne, Romain Lavaud, Jonathan Flye-Sainte-Marie, et al.. Deciphering the molecular adaptation of the king scallop (Pecten maximus) to heat stress using transcriptomics and proteomics. BMC Genomics, BioMed Central, 2015, 16, pp.988. ⟨10.1186/s12864-015-2132-x⟩. ⟨hal-02552404⟩
  • Katherine Mcfarland, Fred Jean, Philippe Soudant, Aswani K. Volety. Uptake and elimination of brevetoxin in the invasive green mussel, Perna viridis, during natural Karenia brevis blooms in southwest Florida. Toxicon, Elsevier, 2015, 97, pp.46-52. ⟨10.1016/j.toxicon.2015.02.005⟩. ⟨hal-01145560⟩
  • Arturo Aguirre-Velarde, Jonathan Flye-Sainte-Marie, Jaime Mendo, Fred Jean. Sclerochronological records and daily microgrowth of the Peruvian scallop (Argopecten purpuratus, Lamarck, 1819) related to environmental conditions in Paracas Bay, Pisco, Peru. Journal of Sea Research, Elsevier, 2015, 99, pp.1-8. ⟨10.1016/j.seares.2015.01.002⟩. ⟨hal-01145400⟩
  • V Marchais, J Richard, A Jolivet, Jonathan Flye-Sainte-Marie, Julien Thébault, et al.. Coupling experimental and field-based approaches to decipher carbon sources in the shell of the great scallop, Pecten maximus (L.). Geochimica et Cosmochimica Acta, Elsevier, 2015, 168, pp.58-69. ⟨10.1016/j.gca.2015.07.010⟩. ⟨hal-01211666⟩
  • Sébastien Artigaud, Romain Lavaud, Julien Thébault, Fred Jean, Oivind Strand, et al.. Proteomic-based comparison between populations of the Great Scallop, Pecten maximus.. Journal of Proteomics, Elsevier, 2014, 105, pp.164-73. ⟨10.1016/j.jprot.2014.03.026⟩. ⟨hal-01022851⟩
  • Sébastien Artigaud, Michael a S Thorne, Joëlle Richard, Romain Lavaud, Fred Jean, et al.. Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus.. Marine Genomics, Elsevier, 2014, 15, pp.3-4. ⟨10.1016/j.margen.2014.03.006⟩. ⟨hal-01022918⟩
  • Christine Paillard, Fred Jean, Susan Ford, Eric N. Powell, John Klinck, et al.. A theoretical individual-based model of Brown Ring Disease in Manila clams, Venerupis philippinarum. Journal of Sea Research, Elsevier, 2014, 91, pp.15-34. ⟨10.1016/j.seares.2014.03.005⟩. ⟨hal-01056541⟩
  • Romain Lavaud, Jonathan Flye-Sainte-Marie, Fred Jean, Antoine Emmery, Oivind Strand, et al.. Feeding and energetics of the great scallop, Pecten maximus, through a DEB model. Journal of Sea Research, Elsevier, 2014, 94, pp.5 - 18. ⟨10.1016/j.seares.2013.10.011⟩. ⟨hal-00917710⟩
  • Fred Jean, Jonathan Flye-Sainte-Marie, Clémence Oudard, Christine Paillard. Handling enhances the development of brown ring disease signs in Ruditapes philippinarum. Journal of Shellfish Research, National Shellfisheries Association, 2011, 30 (1), pp.13-15. ⟨10.2983/035.030.0103⟩. ⟨hal-00568169v2⟩
  • Sorcha Ni Longphuirt, Olivier Ragueneau, Laurent Chauvaud, Sophie Martin, Fred Jean, et al.. Diurnal heterogeneity in silicic acid fluxes in shallow coastal sites: Causes and implications. Estuarine, Coastal and Shelf Science, Elsevier, 2009, 82 (3), pp.495-502. ⟨10.1016/j.ecss.2009.02.014⟩. ⟨hal-00455595⟩
  • Jonathan Flye-Sainte-Marie, Fred Jean, Christine Paillard, Sebastian, A.L.M. Kooijman. A quantitative estimation of the energetic cost of brown ring disease in the Manila clam using Dynamic Energy Budget theory. Journal of Sea Research, Elsevier, 2009, 62 (2-3), pp.114-123. ⟨10.1016/j.seares.2009.01.007⟩. ⟨hal-00461368⟩
  • Jonathan Flye-Sainte-Marie, Philippe Soudant, Christophe Lambert, Nelly Le Goïc, Madeleine Goncalvez, et al.. Variability of the hemocyte parameters of Ruditapes philippinarum in the field during an annual cycle. Journal of Experimental Marine Biology and Ecology, Elsevier, 2009, 377 (1), pp.1-11. ⟨10.1016/j.jembe.2009.06.003⟩. ⟨hal-00452255⟩
  • Jonathan Flye-Sainte-Marie, Fred Jean, Susan Ford, Christine Paillard. Effect of sediment grain-size on development of brown ring disease in the Manila clam Ruditapes philippinarum. Aquaculture, Elsevier, 2008, 278 (1-4), pp.184-187. ⟨10.1016/j.aquaculture.2008.03.013⟩. ⟨hal-00452260⟩
  • Jonathan Flye-Sainte-Marie, Fred Jean, Christine Paillard, Susan Ford, Eric Powell, et al.. Ecophysiological dynamic model of individual growth of Ruditapes philippinarum. Aquaculture, Elsevier, 2007, 266 (1-4), pp.130-143. ⟨10.1016/j.aquaculture.2007.02.017⟩. ⟨hal-00452257⟩
  • Philippe Pondaven, Morgane Gallinari, Sophie Chollet, Eva Bucciarelli, Géraldine Sarthou, et al.. Grazing-induced changes in cell wall silicification in a marine diatom. Protist, Elsevier, 2007, 158 (1), pp.21-28. ⟨10.1016/j.protis.2006.09.002⟩. ⟨hal-00472048⟩
  • Jonathan Flye-Sainte-Marie, Stéphane Pouvreau, Christine Paillard, Fred Jean. Impact of Brown Ring Disease on the energy budget of the Manila clam Ruditapes philippinarum. Journal of Experimental Marine Biology and Ecology, Elsevier, 2007, 349 (2), pp.378-389. ⟨10.1016/j.jembe.2007.05.029⟩. ⟨hal-00452254⟩
  • K. Dedieu, C. Rabouille, Gérard Thouzeau, F. Jean, Laurent Chauvaud, et al.. Benthic O2 distribution and dynamics in a Mediterranean lagoon (Thau, France): An in situ microelectrode study. Estuarine, Coastal and Shelf Science, Elsevier, 2007, 72, pp.393-405. ⟨10.1016/j.ecss.2006.11.010⟩. ⟨hal-00203159⟩
  • S. Martin, Gérard Thouzeau, M. Richard, Laurent Chauvaud, F. Jean, et al.. Benthic community respiration in areas impacted by the invasive mollusk, Crepidula fornicata L.. Marine Ecology Progress Series, Inter Research, 2007, 347, pp.51-60. ⟨hal-00524678⟩
  • Gérard Thouzeau, J. Grall, Jacques Clavier, Laurent Chauvaud, F. Jean, et al.. Spatial and temporal variability in benthic biogeochemical fluxes in the Thau lagoon associated with macrophytic and macrofaunal distribution. Estuarine, Coastal and Shelf Science, Elsevier, 2007, 72 (3), pp.432-447. ⟨hal-00524693⟩
  • K. Dedieu, C. Rabouille, Gérard Thouzeau, F. Jean, Laurent Chauvaud, et al.. Benthic O2 distribution and dynamics in a Mediterranean lagoon: an in situ microelectrode study. Estuarine, Coastal and Shelf Science, Elsevier, 2007, 72 (3), pp.393-405. ⟨hal-00524689⟩
  • D. Point, Mathilde Monperrus, Emmanuel Tessier, David Amouroux, Laurent Chauvaud, et al.. Biological control of trace metal and organometal benthic fluxes in a eutrophic lagoon (Thau Lagoon, Mediterranean Sea, France). Estuarine, Coastal and Shelf Science, Elsevier, 2007, 72 (3), pp.457-471. ⟨10.1016/j.ecss.2006.11.013⟩. ⟨hal-00460083⟩
  • S. Martin, Gérard Thouzeau, Laurent Chauvaud, F. Jean, L. Guérin, et al.. Respiration, calcification and excretion of the invasive limpet, Crepidula fornicata L.: implications for carbon carbonate and nitrogen fluxes. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2006, 51 (5), pp.1996-2007. ⟨hal-00524728⟩
  • Christophe Lambert, Philippe Soudant, Lionel Dégremont, Maryse Delaporte, Jeanne Moal, et al.. Hemocyte characteristics in families of oysters, Crassostrea gigas, selected for differential survival during summer and reared in three sites. Aquaculture, Elsevier, 2005, 270, pp.276-288. ⟨hal-00616866⟩
  • Olivier Ragueneau, Laurent Chauvaud, Brivaëla Moriceau, Aude Leynaert, Gérard Thouzeau, et al.. Biodeposition by an invasive suspension feeder impacts the biogeochemical cycle of Si in a coastal ecosystem (Bay of Brest, France). Biogeochemistry, Springer Verlag, 2005, 75 (1), pp.19-41. ⟨hal-00524731⟩
  • Sophie Martin, Jacques Clavier, Jean-Marc Guarini, Laurent Chauvaud, Christian Hily, et al.. Comparison of Zostera marina and maerl community metabolism. Aquatic Botany, Elsevier, 2005, 83, pp.161-174. ⟨hal-00091287⟩
  • Laurent Chauvaud, Anne Lorrain, Robert B. Dunbar, Yves-Marie Paulet, Gérard Thouzeau, et al.. Shell of the Great Scallop Pecten maximus as a high-frequency archive of paleoenvironmental changes. Geochemistry, Geophysics, Geosystems, AGU and the Geochemical Society, 2005, 6, pp.50-80. ⟨hal-00091298⟩
  • Laurent Chauvaud, Anne Lorrain, Robert B. Dunbar, Yves-Marie Paulet, Gérard Thouzeau, et al.. The shell of the Great Scallop Pecten maximus as a high frequency archive of paleoenvironmental change. Geochemistry, Geophysics, Geosystems, AGU and the Geochemical Society, 2005, 6 (8), pp.1-15. ⟨10.1029/2004GC000890⟩. ⟨hal-00452414⟩
  • Olivier Ragueneau, Laurent Chauvaud, Aude Leynaert, Gérard Thouzeau, Yves-Marie Paulet, et al.. Direct evidence of a biologically active coastal silicate pump: Ecological implications. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2002, 47 (6), pp.1849-1854. ⟨10.4319/lo.2002.47.6.1849⟩. ⟨hal-00959802⟩
  • Laurent Chauvaud, F. Jean, Olivier Ragueneau, Gérard Thouzeau. Long-term variation of the Bay of Brest ecosystem: benthic-pelagic coupling revisited. Marine Ecology Progress Series, Inter Research, 2000, 200, pp.35-48. ⟨hal-00524757⟩
  • F. Jean, Gérard Thouzeau. Estimate of state variables of a trophic web model in the Bay of Brest. Comptes rendus de l’Académie des sciences. Série III, Sciences de la vie, Elsevier, 1995, 318, pp.145-154. ⟨hal-00524774⟩
  • Frédéric Jean, Christian Hily. Quantitative sampling of soft-bottom macroepifauna for assessing the benthic system in the Bay of Brest (France). Oceanologica Acta, Elsevier, 1994, 17 (3), pp.319-330. ⟨hal-00568533⟩

Conference papers4 documents

  • Olivier Ragueneau, Mélanie Raimonet, Camille Mazé, Jennifer Coston-Guarini, Anatole Danto, et al.. The impossible sustainability of the Bay of Brest? 40 years of ecosystem evolution, interdisciplinary knowledge construction and key questions at the science-policy-communities interface. International Long Term Ecological Research Network & LTER-France (Zones Ateliers Network & Critical Zone Observatories) joint conference, LTER-France - Zones Ateliers Network & Critical Zone Observatories, Oct 2017, Nantes, France. ⟨hal-02502083⟩
  • D. Amouroux, Mathilde Monperrus, D. Point, E. Tessier, Laurent Chauvaud, et al.. Mercury species benthic fluxes measurements in coastal environments as influenced by the biological activity. 7th International Conference on Mercury as a Global Pollutant, 2004, Ljubljana, pp.770-773. ⟨hal-00524827⟩
  • Mathilde Monperrus, J. Grall, L. Rodriguez, Gérard Thouzeau, F. Jean, et al.. Trophic bioaccumulation of mercury species in macrobenthic organisms from French coastal sites. 7th International Conference on Mercury as a Global Pollutant, 2004, Ljubljana, pp.1226-1230. ⟨hal-00524829⟩
  • D. Amouroux, Mathilde Monperrus, D. Point, E. Tessier, G. Bareille, et al.. Transfer of metallic contaminants at the sediment-water interface in a coastal lagoon: role of the biological and microbial activity. XIIth international conference on Heavy metals in the environment, ICHMET, May 2003, Grenoble, France. pp.41-44. ⟨hal-00524823⟩

Poster communications1 document

  • Yoann Thomas, Fred Jean, Laure Pecquerie, Gonçalo Marques, Sébastien Hervé, et al.. DEBSe@: an e-learning platform to introduce the Dynamic Energy Budget (DEB) theory for marine ecology, fisheries sciences and aquaculture applications. International Society for Ecological Modelling - Global Conference 2016, May 2016, Baltimore, United States. 2016, ⟨10.13140/RG.2.2.32880.25602⟩. ⟨hal-01395769⟩