Filipe Borges

Documents

Publications

	Epigenetic control of transposons during plant reproduction: From meiosis to hybrid seeds Kannan Pachamuthu , Filipe Borges Current Opinion in Plant Biology, 2023, 75, pp.102419. ⟨10.1016/j.pbi.2023.102419⟩ Article dans une revue hal-04179221v1
	Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis Jonathan Huc , Katarzyna Dziasek , Kannan Pachamuthu , Tristan Woh , Claudia Köhler The Plant cell, 2022, 34 (3), pp.989-1001. ⟨10.1093/plcell/koab284⟩ Article dans une revue hal-04179207v1
	Specificities and Dynamics of Transposable Elements in Land Plants Corinne Mhiri , Filipe Borges , Marie-Angèle Grandbastien Biology, 2022, 11 (4), pp.488. ⟨10.3390/biology11040488⟩ Article dans une revue hal-04179211v1
	Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis Nicolas Butel , Agnès Yu , Ivan Le Masson , Filipe Borges , Taline Elmayan Nature Communications, 2021, 12 (1), pp.1-12. ⟨10.1038/s41467-021-22995-3⟩ Article dans une revue hal-03318287v1
	DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis Chin Hong Lee , Nathaniel Hawker , Jonathan Peters , Thierry Lonhienne , Nial Gursanscky PLoS Genetics, 2021, 17 (5), pp.e1009561. ⟨10.1371/journal.pgen.1009561⟩ Article dans une revue hal-03363693v1
	Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function Souraya Khouider , Filipe Borges , Chantal Leblanc , Alexander Ungru , Arp Schnittger Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-020-20606-1⟩ Article dans une revue hal-03113753v1
	Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation Filipe Borges , Mark T.A. Donoghue , Chantal Leblanc , Emily Wear , Milos Tanurdžić Current Biology - CB, 2021, 31 (3), pp.591-600. ⟨10.1016/j.cub.2020.10.098⟩ Article dans une revue hal-03332098v1
	Polymerase IV Plays a Crucial Role in Pollen Development in Capsella Zhenxing Wang , Nicolas Butel , Juan Santos-González , Filipe Borges , Jun Yi The Plant cell, 2020, 32 (4), pp.950-966. ⟨10.1105/tpc.19.00938⟩ Article dans une revue hal-02935298v1
	Selection and validation of reference genes for qPCR analysis of miRNAs and their targets during somatic embryogenesis in tamarillo (Solanum betaceum Cav.) Daniela Cordeiro , Miguel Rito , Filipe Borges , Jorge Canhoto , Sandra Correia Plant Cell, Tissue and Organ Culture, 2020, 143 (1), pp.109-120. ⟨10.1007/s11240-020-01901-7⟩ Article dans une revue hal-03157305v1
	Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation Charles J. Underwood , Kyuha Choi , Christophe Lambing , Xiaohui Zhao , Heïdi Serra Genome Research, 2018, 28 (4), pp.519-531. ⟨10.1101/gr.227116.117⟩ Article dans une revue hal-02624267v1
	Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis Filipe Borges , Jean-Sébastien Parent , Frédéric van Ex , Philip Wolff , German Martinez Nature Genetics, 2018, 50 (2), pp.186-192. ⟨10.1038/s41588-017-0032-5⟩ Article dans une revue hal-02625249v1
	The expanding world of small RNAs in plants Filipe Borges , Robert A. Martienssen Nature Reviews Molecular Cell Biology, 2015, 16 (12), pp.727-741. ⟨10.1038/nrm4085⟩ Article dans une revue hal-02641568v1
	miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis Kate M. Creasey , Jixian Zhai , Filipe Borges , Frédéric van Ex , Michael Regulski Nature, 2014, 508 (7496), pp.411-415. ⟨10.1038/nature13069⟩ Article dans une revue hal-02638598v1
	Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature Jörg D. Becker , Seiji Takeda , Filipe Borges , Liam Dolan , José A. Feijó BMC Plant Biology, 2014, 14, pp.1-14. ⟨10.1186/s12870-014-0197-3⟩ Article dans une revue hal-02639633v1
	Establishing epigenetic variation during genome reprogramming Filipe Borges , Robert A. Martienssen RNA Biology, 2013, 10 (4), pp.490. ⟨10.4161/rna.24085⟩ Article dans une revue hal-02646292v1
	FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei Filipe Borges , Rui Gardner , Telma Lopes , Joseph P. Calarco , Leonor C. Boavida Plant Methods, 2012, 8 (1), pp.1-8. ⟨10.1186/1746-4811-8-44⟩ Article dans une revue hal-02649137v1
	Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA Joseph P. Calarco , Filipe Borges , Mark T. A. Donoghue , Frédéric van Ex , Pauline E. Jullien Cell, 2012, 151 (1), pp.194-205. ⟨10.1016/j.cell.2012.09.001⟩ Article dans une revue hal-02652232v1
	Glutamate receptor-like genes form Ca2+ channels in pollen tubes and are regulated by pistil D-serine Erwan Michard , Pedro T. Lima , Filipe Borges , Ana Catarina Silva , Maria Teresa Portes Science, 2011, 332 (6028), pp.434-437. ⟨10.1126/science.1201101⟩ Article dans une revue hal-02649951v1
	MicroRNA activity in the Arabidopsis male germline Filipe Borges , Patrícia A. Pereira , R. Keith Slotkin , Robert A. Martienssen , Jörg D. Becker Journal of Experimental Botany, 2011, 62 (5), pp.1611-1619. ⟨10.1093/jxb/erq452⟩ Article dans une revue hal-02652234v1
	Whole genome analysis of gene expression reveals coordinated activation of signaling and metabolic pathways during pollen-pistil interactions in Arabidopsis Leonor C. Boavida , Filipe Borges , Jörg D. Becker , José A. Feijó Plant Physiology, 2011, 155 (4), pp.2066-2080. ⟨10.1104/pp.110.169813⟩ Article dans une revue hal-02646294v1
	Epigenetic reprogramming and small RNA silencing of transposable elements in pollen R. Keith Slotkin , Matthew Vaughn , Filipe Borges , Milos Tanurdzic , Jörg D. Becker Cell, 2009, 136 (3), pp.461-472. ⟨10.1016/j.cell.2008.12.038⟩ Article dans une revue hal-02666128v1
	Comparative transcriptomics of Arabidopsis sperm cells Filipe de Sousa Borges , Gabriela Gomes , Rui Gardner , Nuno Moreno , Sheila Mccormick Plant Physiology, 2008, 148 (2), pp.1168. ⟨10.1104/pp.108.125229⟩ Article dans une revue hal-02660167v1

	Targeted suppression of siRNA biogenesis in Arabidopsis pollen reveals distinct Pol IV activities in the sperm and vegetative cell lineages Kannan Pachamuthu , Matthieu Simon , Filipe Borges 2023 Pré-publication, Document de travail hal-04179205v1

Filipe Borges

Publications

Epigenetic control of transposons during plant reproduction: From meiosis to hybrid seeds

Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis

Specificities and Dynamics of Transposable Elements in Land Plants

Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis

DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis

Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function

Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation

Polymerase IV Plays a Crucial Role in Pollen Development in Capsella

Selection and validation of reference genes for qPCR analysis of miRNAs and their targets during somatic embryogenesis in tamarillo (Solanum betaceum Cav.)

Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation

Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis

The expanding world of small RNAs in plants

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis

Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature

Establishing epigenetic variation during genome reprogramming

FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

Glutamate receptor-like genes form Ca2+ channels in pollen tubes and are regulated by pistil D-serine

MicroRNA activity in the Arabidopsis male germline

Whole genome analysis of gene expression reveals coordinated activation of signaling and metabolic pathways during pollen-pistil interactions in Arabidopsis

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

Comparative transcriptomics of Arabidopsis sperm cells

Targeted suppression of siRNA biogenesis in Arabidopsis pollen reveals distinct Pol IV activities in the sperm and vegetative cell lineages