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Selection for infectivity profiles in slow and fast epidemics, and the rise of SARS-CoV-2 variants

 François Blanquart , Nathanaël Hozé , Benjamin John Cowling , Florence Débarre , Simon Cauchemez
eLife, 2022, 11, pp.e75791. ⟨10.7554/eLife.75791⟩
Article dans une revue hal-03835687v1
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Fisher to the rescue

 François Blanquart , Florence Débarre
2019, pp.100072. ⟨10.24072/pci.evolbiol.100072⟩
Autre publication scientifique hal-02550744v1
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Can a Population Targeted by a CRISPR-Based Homing Gene Drive Be Rescued?

 Nicolas O. Rode , Virginie Courtier-Orgogozo , Florence Débarre
G3, 2020, 10 (9), pp.3403-3415. ⟨10.1534/g3.120.401484⟩
Article dans une revue hal-02978494v1
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Detecting the macroevolutionary signal of species interactions

 Luke J Harmon , Cecilia S Andreazzi , Florence Débarre , Jonathan Drury , Emma E Goldberg , et al.
Journal of Evolutionary Biology, 2019, 32 (8), pp.769-782. ⟨10.1111/jeb.13477⟩
Article dans une revue hal-03002995v1
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Demographic feedbacks can hamper the spatial spread of a gene drive

 Léo Girardin , Florence Débarre
Journal of Mathematical Biology, 2021, 83, pp.67. ⟨10.1007/s00285-021-01702-2⟩
Article dans une revue hal-03121911v2
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Characterization of vaccine-breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community in France

 François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Gina Cosentino , et al.
2021
Pré-publication, Document de travail hal-03318483v2

Using early detection data to estimate the date of emergence of an epidemic outbreak

 S. Jijón , P. Czuppon , F. Blanquart , Florence Débarre
2023
Pré-publication, Document de travail hal-04275665v1
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Gender equity at scientific events

 Florence Débarre , Nicolas O. Rode , L. V. Ugelvig
Evolution Letters, 2018, 2 (3), pp.148-157. ⟨10.1002/evl3.49⟩
Article dans une revue hal-02622749v1
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Factors favouring the evolution of multidrug resistance in bacteria

 Eliott Jacopin , Sonja Lehtinen , Florence Débarre , François Blanquart
Journal of the Royal Society Interface, 2020, 17 (168), ⟨10.1098/rsif.2020.0105⟩
Article dans une revue hal-03002992v1
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Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus

 Fanny Gascuel , Marc Choisy , Jean-Marc J.-M. Duplantier , Florence Débarre , Carine Brouat
PLoS Computational Biology, 2013, 9 (5), ⟨10.1371/journal.pcbi.1003039⟩
Article dans une revue hal-02646316v1

Can evolutionary biology help better predict the risks associated with population control using gene drives?

 Nicolas O. Rode , Arnaud A Estoup , Denis Bourguet , V. Courtier-Orgogozo , Florence Débarre
2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France
Communication dans un congrès hal-02785305v1

Genetic evidence of susceptible wildlife in SARS-CoV-2 positive samples at the Huanan Wholesale Seafood Market, Wuhan: Analysis and interpretation of data released by the Chinese Center for Disease Control

 Alex Crits-Christoph , Karthik Gangavarapu , Jonathan Pekar , Niema Moshiri , Reema Singh , et al.
2023
Pré-publication, Document de travail hal-04275674v1
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Spread of the Delta variant, vaccine effectiveness against PCR-detected infections and within-host viral load dynamics in the community in France

 François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Gina Cosentino , et al.
2021
Pré-publication, Document de travail hal-03289443v1

Editorial Expression of Concern

 Daniel I. Bolnick , Jeremy W. Fox , Florence Débarre , Emma I. Dietrich , Steve M. Phelps , et al.
The American Naturalist, 2021, 198 (2), pp.313--316. ⟨10.1086/714867⟩
Article dans une revue hal-03992181v1
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Imperfect Strategy Transmission Can Reverse the Role of Population Viscosity on the Evolution of Altruism

 Florence Débarre
Dynamic Games and Applications, 2019, 10, pp.732-763. ⟨10.1007/s13235-019-00326-y⟩
Article dans une revue hal-02406568v1
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The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection

 Peter Czuppon , Emmanuel Schertzer , François Blanquart , Florence Débarre
Journal of the Royal Society Interface, 2021, 18 (184), pp.20210575. ⟨10.1098/rsif.2021.0575⟩
Article dans une revue hal-03439370v1
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The effect of habitat choice on evolutionary rescue in subdivided populations

 Peter Czuppon , François Blanquart , Hildegard Uecker , Florence Débarre
2020
Pré-publication, Document de travail hal-03002998v1
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The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations

 Peter Czuppon , François Blanquart , Hildegard Uecker , Florence Débarre
The American Naturalist, 2021, 197 (6), pp.625-643. ⟨10.1086/714034⟩
Article dans une revue hal-03439344v1
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Success of prophylactic antiviral therapy for SARS-CoV-2: predicted critical efficacies and impact of different drug-specific mechanisms of action

 Peter Czuppon , Florence Débarre , Antonio Gonçalves , Olivier Tenaillon , Alan S Perelson , et al.
PLoS Computational Biology, 2021, 17 (3), pp.e1008752. ⟨10.1371/journal.pcbi.1008752⟩
Article dans une revue hal-03003001v3
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Le SARS-CoV-2 : une expérience inédite de surveillance génomique mondiale

 Hélène Touzet , Mikaël Salson , Claire Lemaitre , Florence Débarre
2023
Article de blog scientifique hal-04155812v1

Linking local adaptation with the evolution of sex differences

 Tim Connallon , Florence Débarre , Xiang-Yi Li
Philosophical Transactions of the Royal Society B: Biological Sciences, 2018, 373 (1757), pp.20170414. ⟨10.1098/rstb.2017.0414⟩
Article dans une revue hal-02406588v1
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The French Covid-19 vaccination policy did not solve vaccination inequities: a nationwide study on 64.5 million people

 Florence Débarre , Emmanuel Lecoeur , Lucie Guimier , Marie Jauffret-Roustide , Anne-Sophie Jannot
European Journal of Public Health, 2022, 32 (5), pp.825-830. ⟨10.1093/eurpub/ckac125⟩
Article dans une revue hal-03508547v2
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Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks

 Nicolas O. Rode , Arnaud A Estoup , Denis Bourguet , Virginie Courtier-Orgogozo , Florence Débarre
Conservation Genetics, 2019, 20 (4), pp.671-690. ⟨10.1007/s10592-019-01165-5⟩
Article dans une revue hal-02338278v1
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SARS-CoV-2 viral dynamics in infections with variants of concern in the French community

 Gina Cosentino , Mathieu Bernard , Joëvin Ambroise , Jean-Marc Giannoli , Jérémie Guedj , et al.
2021
Pré-publication, Document de travail hal-03217231v1
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Catch me if you can: a spatial model for a brake-driven gene drive reversal

 Léo Girardin , Vincent Calvez , Florence Débarre
Bulletin of Mathematical Biology, 2019, 81 (12), pp.5054-5088. ⟨10.1007/s11538-019-00668-z⟩
Article dans une revue hal-01954463v2
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Chaos and the (Un)Predictability of Evolution in a Changing Environment

 Artur Rego-Costa , Florence Débarre , Luis-Miguel Chevin
Evolution - International Journal of Organic Evolution, 2018, 72 (2), pp.375--385. ⟨10.1111/evo.13407⟩
Article dans une revue hal-03985243v1
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A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance

 Peter Czuppon , Troy Day , Florence Débarre , François Blanquart
PLoS Computational Biology, 2023, 19 (8), pp.e1011364. ⟨10.1371/journal.pcbi.1011364⟩
Article dans une revue hal-04275613v1
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Gene Drives: Dynamics and Regulatory Matters—A Report from the Workshop “Evaluation of Spatial and Temporal Control of Gene Drives,” April 4–5, 2019, Vienna

 Bernd Giese , Johannes L Friess , Nicholas H Barton , Philipp W Messer , Florence Débarre , et al.
BioEssays, 2019, 10 (9), pp.1900151. ⟨10.1002/bies.201900151⟩
Article dans une revue hal-02321692v1

Evolution of dispersal in spatially and temporally variable environments: the importance of life cycles

 François Massol , Florence Débarre
Evolution - International Journal of Organic Evolution, 2015, 69 (7), pp.1925-1937. ⟨10.1111/evo.12699⟩
Article dans une revue istex hal-01165583v1
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MetaPopGen 2.0: A multi‐locus genetic simulator to model populations of large size

 Marco Andrello , Florence Débarre , Stéphanie Manel
Molecular Ecology Resources, 2020, ⟨10.1111/1755‐0998.13270⟩
Article dans une revue hal-03002459v1
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