CV Fadi BITTAR

Ahmad Ibrahim, Mohamad Maatouk, Didier Raoult, Fadi Bittar. Reverse Genomics: Design of Universal Epitope Sets to Isolate All Saccharibacteria Members from the Human Oral Cavity. Microorganisms, MDPI, 2022, 10 (3), pp.602. ⟨10.3390/microorganisms10030602⟩. ⟨hal-03663844⟩

Ahmad Ibrahim, Mohamad Maatouk, Andriamiharimamy Rajaonison, Rita Zgheib, Gabriel Haddad, et al.. Adapted Protocol for Saccharibacteria Cocultivation: Two New Members Join the Club of Candidate Phyla Radiation. Microbiology Spectrum, American Society for Microbiology, 2021, 9 (3), ⟨10.1128/spectrum.01069-21⟩. ⟨hal-03636811⟩

Mohamad Maatouk, Ahmad Ibrahim, Jean-Marc Rolain, Vicky Merhej, Fadi Bittar. Small and Equipped: the Rich Repertoire of Antibiotic Resistance Genes in Candidate Phyla Radiation Genomes. mSystems, 2021, 6 (6), ⟨10.1128/mSystems.00898-21⟩. ⟨hal-03636728⟩

Abdourahim Abdillah, Saber Khelaifia, Didier Raoult, Fadi Bittar, Stephane Ranque. Comparison of Three Skin Sampling Methods and Two Media for Culturing Malassezia Yeast. Journal of Fungi, MDPI, 2020, 6 (4), pp.350. ⟨10.3390/jof6040350⟩. ⟨hal-03141598⟩

Hanane Yousfi, Stéphane Ranque, Carole Cassagne, Jean-Marc Rolain, Fadi Bittar. Identification of repositionable drugs with novel antimycotic activity by screening Prestwick Chemical Library against emerging invasive molds. Journal of Global Antimicrobial Resistance, Elsevier, 2020, ⟨10.1016/j.jgar.2020.01.002⟩. ⟨hal-02464583⟩

Sokhna Ndongo, Mamadou Beye, Noemie Labas, Fabrizio Di Pinto, Magali Richez, et al.. Gorillibacterium timonense sp. nov., isolated from an obese patient. Archives of Microbiology, Springer Verlag, 2020, ⟨10.1007/s00203-020-01834-x⟩. ⟨hal-02502401⟩

Rita Abou Abdallah, Liliane Okdah, Jacques Bou Khalil, Hussein Anani, Pierre-Edouard Fournier, et al.. Draft genome and description of Chryseobacterium phocaeense sp. nov.: a new bacterial species isolated from the sputum of a cystic fibrosis patient. Archives of Microbiology, Springer Verlag, 2019, 1, ⟨10.1007/s00203-019-01704-1⟩. ⟨hal-02263553⟩

Hanane Yousfi, Stéphane Ranque, Jean-Marc Rolain, Fadi Bittar. In vitro polymyxin activity against clinical multidrug-resistant fungi. Antimicrobial Resistance and Infection Control, BioMed Central, 2019, 8 (1), ⟨10.1186/s13756-019-0521-7⟩. ⟨hal-02159425⟩

Aly Kodio, Drissa Coulibaly, Abdoulaye Kassoum Koné, Salimata Konate, Safiatou Doumbo, et al.. Blastocystis Colonization Is Associated with Increased Diversity and Altered Gut Bacterial Communities in Healthy Malian Children. Microorganisms, MDPI, 2019, 7 (12), pp.649. ⟨10.3390/microorganisms7120649⟩. ⟨hal-02454474⟩

Melhem Bilen, Maxime Descartes Mbogning Fonkou, Aurélia Caputo, Thi-Thien Nguyen, Fabrizio Di Pinto, et al.. Phoenicibacter congonensis gen. nov., sp. nov., a new genus isolated from the human gut and its description using a taxonogenomic approach. Antonie van Leeuwenhoek, Springer Verlag, 2019, 112 (5), pp.775-784. ⟨10.1007/s10482-018-01211-1⟩. ⟨hal-02263646⟩

Hanane Yousfi, Carole Cassagne, Stephane Ranque, Jean-Marc Rolain, Fadi Bittar. Repurposing of ribavirin as an adjunct therapy against invasive Candida strains: In vitro study. Antimicrobial Agents and Chemotherapy, American Society for Microbiology, 2019, ⟨10.1128/AAC.00263-19⟩. ⟨hal-02263610⟩

Rita Abou Abdallah, Jacques Bou Khalil, Claudia Andrieu, Enora Tomei, Nicholas Armstrong, et al.. Draft genome and description of Cohnella massiliensis sp. nov., a new bacterial species isolated from the blood culture of a hemodialysis patient. Archives of Microbiology, Springer Verlag, 2019, 201 (3), pp.305-312. ⟨10.1007/s00203-018-1612-1⟩. ⟨hal-02202136⟩

Sory Ibrahima Traore, Melhem Bilen, Mamadou Beye, Awa Diop, Maxime Descartes Mbogning Fonkou, et al.. Noncontiguous finished genome sequence and description of Raoultibacter massiliensis gen. nov., sp. nov. and Raoultibacter timonensis sp. nov, two new bacterial species isolated from the human gut. MicrobiologyOpen, Wiley, 2019, 8 (6), pp.e00758. ⟨10.1002/mbo3.758⟩. ⟨hal-02262558⟩

Melhem Bilen, Maxime Descartes Mbogning Fonkou, Saber Khelaifia, Enora Tomei, Frederic Cadoret, et al.. Taxonogenomics description of Parabacteroides timonensis sp. nov. isolated from a human stool sample. MicrobiologyOpen, Wiley, 2018, pp.e00702. ⟨10.1002/mbo3.702⟩. ⟨hal-02006029⟩

Linda Hadjadj, Tawisa Jiyipong, Fadi Bittar, Serge Morand, Jean-Marc Rolain. First Draft Genome Sequences of Two Bartonella tribocorum Strains from Laos and Cambodia. Genome Announcements, American Society for Microbiology, 2018, 6 (2), ⟨10.1128/genomeA.01435-17⟩. ⟨hal-02006202⟩

Estelle Menu, Charles Mary, Isabelle Toga, Didier Raoult, Stéphane Ranque, et al.. Evaluation of two DNA extraction methods for the PCR-based detection of eukaryotic enteric pathogens in fecal samples. BMC Research Notes, BioMed Central, 2018, 11 (1), ⟨10.1186/s13104-018-3300-2⟩. ⟨hal-02006222⟩

Amadou H. Togo, Awa Diop, Matthieu Million, Marie M. Maraninchi, Jean-Christophe J.-C. Lagier, et al.. Draft Genome and Description of Eisenbergiella massiliensis Strain AT11(T): A New Species Isolated from Human Feces After Bariatric Surgery. Current Microbiology, Springer Verlag, 2018, 75 (10), pp.1274-1281. ⟨10.1007/s00284-018-1520-2⟩. ⟨hal-01910318⟩

Ibrahim Hamad, Rita Abou Abdallah, Isabelle Ravaux, Saadia Mokhtari, Herve Tissot-Dupont, et al.. Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients. PLoS ONE, Public Library of Science, 2018, 13 (1), ⟨10.1371/journal.pone.0191913⟩. ⟨hal-01765832⟩

El Hadji Seck, Mamadou Beye, Sory Ibrahima Traore, Saber Khelaifia, Caroline Michelle, et al.. Bacillus kwashiorkori sp nov., a new bacterial species isolated from a malnourished child using culturomics. MicrobiologyOpen, Wiley, 2018, 7 (1), pp.e00535. ⟨10.1002/mbo3.535⟩. ⟨hal-01780644⟩

Khoudia Diop, Claudia Andrieu, Caroline Michelle, Nicholas Armstrong, Fadi Bittar, et al.. Characterization of a New Ezakiella Isolated from the Human Vagina: Genome Sequence and Description of Ezakiella massiliensis sp nov.. Current Microbiology, Springer Verlag, 2018, 75 (4), pp.456-463. ⟨10.1007/s00284-017-1402-z⟩. ⟨hal-01780663⟩

Doudou Sow, Philippe Parola, Khadime Sylla, Magatte Ndiaye, Pascal Delaunay, et al.. Performance of Real-Time Polymerase Chain Reaction Assays for the Detection of 20 Gastrointestinal Parasites in Clinical Samples from Senegal. American Journal of Tropical Medicine and Hygiene, American Society of Tropical Medicine and Hygiene, 2017, 97 (1), pp.173-182. ⟨10.4269/ajtmh.16-0781⟩. ⟨hal-01774347⟩

Jean-Christophe J.-C. Lagier, Michel Drancourt, Remi Charrel, Fadi Bittar, Bernard La Scola, et al.. Many More Microbes in Humans: Enlarging the Microbiome Repertoire. Clinical Infectious Diseases, Oxford University Press (OUP), 2017, 65 (1), pp.S20-S29. ⟨10.1093/cid/cix404⟩. ⟨hal-01730977⟩

Ziena Elsawi, Amadou Hamidou Togo, Mamadou Beye, Gregory Dubourg, Claudia Andrieu, et al.. Hugonella massiliensis gen. nov., sp nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut. MicrobiologyOpen, Wiley, 2017, 6 (4), ⟨10.1002/mbo3.458⟩. ⟨hal-01774691⟩

Rita Abou Abdallah, Teresa Cimmino, Sophie Baron, Frederic Cadoret, Caroline Michelle, et al.. Description of Chryseobacterium timonianum sp nov., isolated from a patient with pneumonia. Antonie van Leeuwenhoek, Springer Verlag, 2017, 110 (9), pp.1121-1132. ⟨10.1007/s10482-017-0885-8⟩. ⟨hal-01730980⟩

Djamel Tahir, Fadi Bittar, Hélène Barré-Cardi, Doudou Sow, Mustapha Dahmani, et al.. Molecular survey of Dirofilaria immitis and Dirofilaria repens by new real-time TaqMan® PCR assay in dogs and mosquitoes (Diptera: Culicidae) in Corsica (France). Veterinary Parasitology, Elsevier, 2017, 235, pp.1-7. ⟨10.1016/j.vetpar.2017.01.002⟩. ⟨hal-01478585⟩

Perrine Hugon, Jean-Christophe J.-C. Lagier, Philippe Colson, Fadi Bittar, Didier Raoult. Repertoire of human gut microbes. Microbial Pathogenesis, Elsevier, 2017, 106 (103-112), ⟨10.1016/j.micpath.2016.06.020⟩. ⟨hal-01478556⟩

Stephane Ranque, Fadi Bittar. Virtual special section `new challenges in antifungal therapy'. International Journal of Antimicrobial Agents, Elsevier, 2017, 50 (6), pp.699. ⟨10.1016/j.ijantimicag.2017.10.005⟩. ⟨hal-01729790⟩

Ibrahim Hamad, Stephane Ranque, Esam I. Azhar, Muhammad Yasir, Asif A. Jiman-Fatani, et al.. Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.16788. ⟨10.1038/s41598-017-17132-4⟩. ⟨hal-01729796⟩

Jean-Christophe J.-C. Lagier, Saber Khelaifia, Maryam Tidjani Alou, Sokhna Ndongo, Niokhor Dione, et al.. Culture of previously uncultured members of the human gut microbiota by culturomics. Nature Microbiology, Nature Publishing Group, 2016, 1 (12), ⟨10.1038/NMICROBIOL.2016.203⟩. ⟨hal-01453324⟩

M Mailhe, Davide Ricaboni, V. Vitton, A. Benezech, Grégory Dubourg, et al.. Noncontiguous finished genome sequence and description of Fusobacterium massiliense sp. nov. isolated from human duodenum. . New Microbes and New Infections, Wiley Online Library 2016, 16, pp.3-12. ⟨10.1016/j.nmni.2016.12.003⟩. ⟨hal-01475451⟩

Maryam Tidjani Alou, Cheikh Sokhna, Fadi Bittar, Saber Khelaifia, Pierre-Edouard Fournier, et al.. ‘Clostridium massiliodielmoense’, a new species isolated from the human gut microbiota. New Microbes and New Infections, Wiley Online Library 2016, 13, pp.27 - 28. ⟨10.1016/j.nmni.2016.05.014⟩. ⟨hal-01478544⟩

Linda Hadjadj, Jaishriram Rathored, Mamadou Bhoye Keita, Caroline Michelle, Anthony Levasseur, et al.. Non contiguous-finished genome sequence and description of Microbacterium gorillae sp. nov.. Standards in Genomic Sciences, 2016, 11 (1), ⟨10.1186/s40793-016-0152-z⟩. ⟨hal-01478559⟩

S Ndongo, Grégory Dubourg, Fadi Bittar, Cheikh Sokhna, Pierre-Edouard Fournier, et al.. Marseillibacter massiliensis gen. nov., sp. nov., a new bacterial genus isolated from the human gut. . New Microbes and New Infections, Wiley Online Library 2016, 16, pp.30-31. ⟨10.1016/j.nmni.2016.12.006⟩. ⟨hal-01474968⟩

Maryam Tidjani Alou, Saber Khelaifia, Caroline Michelle, Claudia Andrieu, Nicholas Armstrong, et al.. Anaerococcus rubiinfantis sp nov., isolated from the gut microbiota of a Senegalese infant with severe acute malnutrition. Anaerobe, Elsevier Masson, 2016, 40, pp.85-94. ⟨10.1016/j.anaerobe.2016.06.007⟩. ⟨hal-01455591⟩

Frédérique Gouriet, Farida Ghiab, Carine Couderc, Fadi Bittar, Hervé Tissot Dupont, et al.. Evaluation of a new extraction protocol for yeast identification by mass spectrometry. Journal of Microbiological Methods, Elsevier, 2016, 129, pp.61-65. ⟨10.1016/j.mimet.2016.08.001⟩. ⟨hal-01478536⟩

Fadi Bittar, Fehmida Bibi, Dhamodharan Ramasamy, Jean-Christophe J.-C. Lagier, Esam I. Azhar, et al.. Non contiguous-finished genome sequence and description of Bacillus jeddahensis sp. nov.. Standards in Genomic Sciences, 2015, 10 (1), ⟨10.1186/s40793-015-0024-y⟩. ⟨hal-01478581⟩

Ibrahim Hamad, Claire-Lise Forestier, Martine Peeters, Eric Delaporte, Didier Raoult, et al.. Wild Gorillas as a Potential Reservoir of Leishmania major. Journal of Infectious Diseases, Oxford University Press (OUP), 2015, 211 (2), pp.267 - 273. ⟨10.1093/infdis/jiu380⟩. ⟨hal-01478638⟩

Ibrahim Hamad, Claire-Lise Forestier, Gilbert Greub, Katia Jaton, Didier Raoult, et al.. Reply to Bastien et al.. Journal of Infectious Diseases, Oxford University Press (OUP), 2015, 212 (3), pp.506 - 508. ⟨10.1093/infdis/jiv130⟩. ⟨hal-01478605⟩

Gaël Mourembou, Florence Fenollar, Jean Bernard Lekana-Douki, Angelique Ndjoyi Mbiguino, Sydney Maghendji Nzondo, et al.. Mansonella, including a Potential New Species, as Common Parasites in Children in Gabon. PLoS Neglected Tropical Diseases, Public Library of Science, 2015, 9 (10), pp.e0004155. ⟨10.1371/journal.pntd.0004155⟩. ⟨hal-01478563⟩

Mamadou Bhoye Keita, Roshan Padhmanabhan, Aurélia Caputo, Catherine Robert, Eric Delaporte, et al.. Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae. Standards in Genomic Sciences, BioMedCentral, 2014, 9 (3), pp.807 - 820. ⟨10.4056/sigs.5199182⟩. ⟨hal-01478632⟩

Fadi Bittar, Mamadou B. Keita, Jean-Christophe J.-C. Lagier, Martine Peeters, Eric Delaporte, et al.. Gorilla gorilla gorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools. Scientific Reports, Nature Publishing Group, 2014, 4 (7174 ), ⟨10.1038/srep07174⟩. ⟨hal-01241992⟩

Ibrahim Hamad, Eric Delaporte, Didier Raoult, Fadi Bittar. Detection of Termites and Other Insects Consumed by African Great Apes using Molecular Fecal Analysis. Scientific Reports, Nature Publishing Group, 2014, 4, ⟨10.1038/srep04478⟩. ⟨hal-01478646⟩

Mamadou Bhoye Keita, Roshan Padhmananabhan, Aurélia Caputo, Catherine Robert, Eric Delaporte, et al.. Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov.. Standards in Genomic Sciences, BioMedCentral, 2014, 9 (3), pp.1031 - 1045. ⟨10.4056/sigs.5189179⟩. ⟨hal-01478628⟩

Mamadou B. Keita, Ibrahim Hamad, Fadi Bittar. Looking in apes as a source of human pathogens. Microbial Pathogenesis, Elsevier, 2014, 77, pp.149-154. ⟨10.1016/j.micpath.2014.09.003⟩. ⟨hal-01478622⟩

Ibrahim Hamad, Mamadou B. Keita, Martine Peeters, Eric Delaporte, Didier Raoult, et al.. Pathogenic Eukaryotes in Gut Microbiota of Western Lowland Gorillas as Revealed by Molecular Survey. Scientific Reports, Nature Publishing Group, 2014, 4, ⟨10.1038/srep06417⟩. ⟨hal-01478617⟩

Poonam Sharma, Seydina M Diene, Sandrine Thibeaut, Fadi Bittar, Véronique Roux, et al.. Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France. BMC Microbiology, BioMed Central, 2013, 13 (1), ⟨10.1186/1471-2180-13-97⟩. ⟨hal-01478651⟩

Mamadou Bhoye Keita, Seydina M. Diene, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier, et al.. Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov.. Standards in Genomic Sciences, 2013, 9 (1), pp.93 - 105. ⟨10.4056/sigs.4388124⟩. ⟨hal-01478647⟩

Xavier Benoit d'Journo, Fadi Bittar, Delphine Trousse, Francoise Gaillat, Christophe Doddoli, et al.. Molecular Detection of Microorganisms in Distal Airways of Patients Undergoing Lung Cancer Surgery. Annals of Thoracic Surgery, Elsevier, 2012, 93 (2), pp.413-422. ⟨10.1016/j.athoracsur.2011.09.049⟩. ⟨hal-01478660⟩

Ibrahim Hamad, Cheikh Sokhna, Didier Raoult, Fadi Bittar. Molecular Detection of Eukaryotes in a Single Human Stool Sample from Senegal. PLoS ONE, Public Library of Science, 2012, 7 (7), ⟨10.1371/journal.pone.0040888⟩. ⟨hal-01478657⟩

Fadi Bittar, Nathalie Stremler, Jean-Pierre Audié, Jean-Christophe Dubus, Jacques Sarles, et al.. Nocardia farcinica lung infection in a patient with cystic fibrosis: a case report. Journal of Medical Case Reports, BioMed Central, 2010, 4 (1), ⟨10.1186/1752-1947-4-84⟩. ⟨hal-01478680⟩

Fadi Bittar, Carole Cassagne, Emmanuelle Bosdure, Nathalie Stremler, Jean-Christophe Dubus, et al.. Outbreak of Corynebacterium pseudodiphtheriticum Infection in Cystic Fibrosis Patients, France. Emerging Infectious Diseases, Centers for Disease Control and Prevention, 2010, 16 (8), pp.1231 - 1236. ⟨10.3201/eid1608.100193⟩. ⟨hal-01478672⟩

Fadi Bittar, Zoulikha Ouchenane, Farida Smati, Didier Raoult, Jean-Marc Rolain. MALDI-TOF-MS for rapid detection of staphylococcal Panton–Valentine leukocidin. International Journal of Antimicrobial Agents, Elsevier, 2009, 34 (5), pp.467. ⟨10.1016/j.ijantimicag.2009.03.017⟩. ⟨hal-00556340⟩

Jean-Marc Rolain, Patrice Francois, David Hernandez, Fadi Bittar, Herve Richet, et al.. Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage. Biology Direct, BioMed Central, 2009, 4 (1), ⟨10.1186/1745-6150-4-1⟩. ⟨hal-01478692⟩

Fadi Bittar, Anne Leydier, Emmanuelle Bosdure, Alexandre Toro, Martine Reynaud-Gaubert, et al.. Inquilinus limosus and Cystic Fibrosis. Emerging Infectious Diseases, Centers for Disease Control and Prevention, 2008, 14 (6), pp.993 - 995. ⟨10.3201/eid1406.071355⟩. ⟨hal-01478698⟩

Fadi Bittar, Hervé Richet, Jean-Christophe Dubus, Martine Reynaud-Gaubert, Nathalie Stremler, et al.. Molecular Detection of Multiple Emerging Pathogens in Sputa from Cystic Fibrosis Patients. PLoS ONE, Public Library of Science, 2008, 3 (8), ⟨10.1371/journal.pone.0002908⟩. ⟨hal-01477648⟩

Magalie Menuet, Fadi Bittar, Nathalie Stremler, Jean-Christophe Dubus, Jacques Sarles, et al.. First isolation of two colistin-resistant emerging pathogens, Brevundimonas diminuta and Ochrobactrum anthropi, in a woman with cystic fibrosis: a case report. Journal of Medical Case Reports, BioMed Central, 2008, 2 (1), ⟨10.1186/1752-1947-2-373⟩. ⟨hal-01478694⟩

Fadi Bittar, Martine Reynaud-Gaubert, Pascal Thomas, Stéphanie Boniface, Didier Raoult, et al.. Acetobacter indonesiensis Pneumonia after Lung Transplant. Emerging Infectious Diseases, Centers for Disease Control and Prevention, 2008, 14 (6), pp.997 - 998. ⟨10.3201/eid1406.071236⟩. ⟨hal-01478697⟩