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Adaptation Strategies to High Hydrostatic Pressures in Pseudothermotoga species Revealed by Transcriptional Analyses

 Romain Fenouil , Nathalie Pradel , Hassiba Belahbib , Marie Roumagnac , Manon Bartoli , et al.
Microorganisms, 2023, 11 (3), pp.773. ⟨10.3390/microorganisms11030773⟩
Article dans une revue hal-04037893v1
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Mesopelagic microbial carbon production correlates with diversity across different marine particle fractions

 Chloé Baumas , Frédéric Le Moigne , Marc Garel , Nagib Bhairy , Sophie Guasco , et al.
The International Society of Microbiologial Ecology Journal, 2021, ⟨10.1038/s41396-020-00880-z⟩
Article dans une revue hal-03113293v1
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Microbial Diversity in Sulfate-Reducing Marine Sediment Enrichment Cultures Associated with Anaerobic Biotransformation of Coastal Stockpiled Phosphogypsum (Sfax, Tunisia)

 Hana Zouch , Fatma Karray , Fabrice Armougom , Sandrine Chifflet , Agnès Hirschler-Réa , et al.
Frontiers in Microbiology, 2017, 8, pp.1583 ⟨10.3389/fmicb.2017.01583⟩
Article dans une revue hal-01622007v1

Identification of Bacterial Strains Isolated from the Mediterranean Sea Exhibiting Different Abilities of Biofilm Formation

 Florence Brian-Jaisson , Annick Ortalo-Magné , Linda Guentas-Dombrowsky , Fabrice Armougom , Yves Blache , et al.
Microbial ecology, 2014, 68 (1), pp.94--110. ⟨10.1007/s00248-013-0342-9⟩
Article dans une revue hal-01364373v1
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Comparative meta-analysis of the effect of Lactobacillus species on weight gain in humans and animals

 Matthieu Million , Emmanouil Angelakis , Mical Paul , Fabrice Armougom , Leonard Leibovici , et al.
Microbial Pathogenesis, 2012, 53 (2), pp.100-108. ⟨10.1016/j.micpath.2012.05.007⟩
Article dans une revue hal-01773004v1

Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies

 Emmanouil Angelakis , Dipankar Bachar , Bernard Henrissat , Fabrice Armougom , Gilles Audoly , et al.
Scientific Reports, 2016, 6, ⟨10.1038/srep26276⟩
Article dans une revue hal-01439071v1
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Genomotyping of Coxiella burnetii using microarrays reveals a conserved genomotype for hard tick isolates

 Quentin Leroy , Fabrice Armougom , Pascal Barbry , Didier Raoult
PLoS ONE, 2011, 6 (10), pp.e25781. ⟨10.1371/journal.pone.0025781⟩
Article dans une revue hal-00724260v1
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Polyphasic analysis of a middle ages coprolite microbiota, Belgium

 Sandra Appelt , Fabrice Armougom , Matthieu Le Bailly , Catherine Robert , Michel Drancourt
PLoS ONE, 2014, 9 (2), pp.e88376. ⟨10.1371/journal.pone.0088376⟩
Article dans une revue hal-00958070v1

Abundance and diversity of prokaryotes in ephemeral hypersaline lake Chott El Jerid using Illumina Miseq sequencing, DGGE and qPCR assays

 Manel Ben Abdallah , Fatma Karray , Najwa Kallel , Fabrice Armougom , Najla Mhiri , et al.
Extremophiles, 2018, 22 (5), pp.811-823. ⟨10.1007/s00792-018-1040-9⟩
Article dans une revue hal-01981823v1
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Obligate sugar oxidation in Mesotoga spp., phylum Thermotogae , in the presence of either elemental sulfur or hydrogenotrophic sulfate-reducers as electron acceptor

 Khaled Fadhlaoui , Wagdi Ben Hania , Fabrice Armougom , Manon Joseph , Marie-Laure Fardeau , et al.
Environmental Microbiology, 2018, 20 (1), pp.281-292. ⟨10.1111/1462-2920.13995⟩
Article dans une revue hal-01976008v1
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Increasing Hydrostatic Pressure Impacts the Prokaryotic Diversity during Emiliania huxleyi Aggregates Degradation

 Christian Tamburini , Marc Garel , Aude Barani , Dominique Boeuf , Patricia Bonin , et al.
Water, 2021, 13 (19), pp.2616. ⟨10.3390/w13192616⟩
Article dans une revue hal-03356668v1
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Coxiella burnetii transcriptional analysis reveals serendipity clusters of regulation in intracellular bacteria

 Quentin Leroy , Kevin Lebrigand , Fabrice Armougom , Pascal Barbry , Richard Thiéry , et al.
PLoS ONE, 2010, 5 (12), pp.e15321. ⟨10.1371/journal.pone.0015321⟩
Article dans une revue hal-00626159v1

Dental pulp as a source of low-contaminated DNA

 Michel Drancourt , Gerard Aboudharam , Olivier Croce , Fabrice Armougom , Catherine Robert , et al.
Microbial Pathogenesis, 2017, 105, pp.63-67. ⟨10.1016/j.micpath.2017.02.007⟩
Article dans une revue hal-01521247v1
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Towards a congruent reclassification and nomenclature of the thermophilic species of the genus Pseudothermotoga within the order Thermotogales

 Hassiba Belahbib , Zarath Summers , Marie-Laure Fardeau , Manon Joseph , Christian Tamburini , et al.
Systematic and Applied Microbiology, 2018, 41 (6), pp.555-563. ⟨10.1016/J.SYAPM.2018.04.007⟩
Article dans une revue hal-01975970v1
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Responses to the Hydrostatic Pressure of Surface and Subsurface Strains of Pseudothermotoga elfii Revealing the Piezophilic Nature of the Strain Originating From an Oil-Producing Well

 Marie Roumagnac , Nathalie Pradel , Manon Bartoli , Marc Garel , Aaron Jones , et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.588771⟩
Article dans une revue hal-03152104v1
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Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome

 Abdessamad El Kaoutari , Fabrice Armougom , Quentin Leroy , Bernard Vialettes , Matthieu Million , et al.
PLoS ONE, 2013, 8 (12), pp.e84033. ⟨10.1371/journal.pone.0084033⟩
Article dans une revue hal-01769722v1

Microbial culturomics: paradigm shift in the human gut microbiome study

 J. -C. J. -C. Lagier , Fabrice Armougom , M. M. Million , P. P. Hugon , I. I. Pagnier , et al.
Clinical Microbiology and Infection, 2012, 18 (12), pp.1185 - 1193. ⟨10.1111/1469-0691.12023⟩
Article dans une revue hal-00964466v1

Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing

 Fabrice Armougom , F. Bittar , N. Stremler , J. Rolain , Cédric Robert Robert , et al.
European Journal of Clinical Microbiology and Infectious Diseases, 2009, 28 (9), pp.1151 - 1154. ⟨10.1007/s10096-009-0749-x⟩
Article dans une revue istex hal-01478682v1
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Pressure-Retaining Sampler and High-Pressure Systems to Study Deep-Sea Microbes Under in situ Conditions

 Marc Garel , Patricia Bonin , Severine Martini , Sophie Guasco , Marie Roumagnac , et al.
Frontiers in Microbiology, 2019, 10, pp.453. ⟨10.3389/fmicb.2019.00453⟩
Article dans une revue hal-02094373v1
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Bacterial diversity and lipid biomarkers in sea ice and sinking particulate organic material during the melt season in the Canadian Arctic

 Rémi Amiraux , Jean-Francois Rontani , Fabrice Armougom , Eléonore Frouin , Marcel Babin , et al.
Elementa: Science of the Anthropocene, 2021, 9 (1), ⟨10.1525/elementa.2019.040⟩
Article dans une revue hal-03424293v1
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Prokaryotic Diversity and Distribution Along Physical and Nutrient Gradients in the Tunisian Coastal Waters (South Mediterranean Sea)

 Marianne Quemeneur , Malika Bel Hassen , Fabrice Armougom , Yosra Khammeri , Rim Lajnef , et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.593540⟩
Article dans une revue hal-03033038v1
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Salinity shifts in marine sediment: Importance of number of fluctuation rather than their intensities on bacterial denitrifying community

 Imen Zaghmouri , Valerie Michotey , Fabrice Armougom , Sophie Guasco , Patricia Bonin
Marine Pollution Bulletin, 2018, 130, pp.76 - 83. ⟨10.1016/j.marpolbul.2018.03.020⟩
Article dans une revue hal-01735881v1

Evidence of the megavirome in humans

 Philippe Colson , Laura Fancello , Gregory Gimenez , Fabrice Armougom , Christelle Desnues , et al.
Journal of Clinical Virology, 2013, 57 (3), pp.191-200
Article dans une revue hal-02007257v1

Microbial culturomics: paradigm shift in the human gut microbiome study

 C. Lagier , Fabrice Armougom , M. Million , P. Hugon , I. Pagnier , et al.
Clinical Microbiology and Infection, 2012, 18 (12), pp.1185 - 1193. ⟨10.1111/1469-0691.12023⟩
Article dans une revue hal-01478655v1
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Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon Sequencing

 Harilanto Felana Andrianjakarivony , Yvan Bettarel , Fabrice Armougom , Christelle Desnues
Viruses, 2023, 15 (1), pp.76. ⟨10.3390/v15010076⟩
Article dans une revue hal-04032690v1
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Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

 Matthieu Million , Maryam Tidjani Alou , Saber Khelaifia , Dipankar Bachar , Jean-Christophe J.-C. Lagier , et al.
Scientific Reports, 2016, 6 (1), pp.26051. ⟨10.1038/srep26051⟩
Article dans une revue hal-01439070v1
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Genomic Insights into a new Citrobacter koseri strain revealed gene exchanges with the virulence-associated Yersinia pestis pPCP1 plasmid

 Fabrice Armougom , Idir Bitam , Olivier Croce , Vicky Merhej , Lina Barassi , et al.
Frontiers in Microbiology, 2016, 7, pp.340. ⟨10.3389/fmicb.2016.00340⟩
Article dans une revue hal-01459560v1
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A novel Thermotoga strain TFO isolated from a Californian petroleum reservoir phylogenetically related to Thermotoga petrophila and T. naphthophila, two thermophilic anaerobic isolates from a Japanese reservoir: Taxonomic and genomic considerations

 Zara M Summers , Hassiba Belahbib , Nathalie Pradel , Manon Bartoli , Pooja Mishra , et al.
Systematic and Applied Microbiology, 2020, 43 (6), pp.126132. ⟨10.1016/j.syapm.2020.126132⟩
Article dans une revue hal-03007670v1
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In situ observations and modelling revealed environmental factors favouring occurrence of Vibrio in microbiome of the pelagic Sargassum responsible for strandings

 Valerie Michotey , Aurelie Blanfuné , Cristele Chevalier , Marc Garel , Frédéric Diaz , et al.
Science of the Total Environment, 2020, 748, pp.141216. ⟨10.1016/j.scitotenv.2020.141216⟩
Article dans une revue hal-02933822v1
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The nature of electron acceptor (MnIV/NO3) triggers differential expression of genes associated with stress and ammonium limitation responses in Shewanella algae C6G3

 Axel Aigle , Patricia Bonin , Nicolas Fernandez -Nunez , Béatrice B. Loriod , Sophie Guasco , et al.
FEMS Microbiology Letters, In press, ⟨10.1093/femsle/fny068⟩
Article dans une revue hal-01766209v1
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