Skip to Main content
Number of documents

87

CV Fab


Journal articles35 documents

  • Méline Saubin, Clémentine Louet, Lydia Bousset, Frédéric Fabre, Pascal Frey, et al.. Improving sustainable crop protection using population genetics concepts. Molecular Ecology, Wiley, In press, ⟨10.1111/mec.16634⟩. ⟨hal-03746299⟩
  • Antoine Persoons, Agathe Maupetit, Clémentine Louet, Axelle Andrieux, Anna Lipzen, et al.. Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2022, 14 (1), 14 p. ⟨10.1093/gbe/evab279⟩. ⟨hal-03606205⟩
  • Clémentine Louet, Méline Saubin, Axelle Andrieux, Antoine Persoons, Mathilde Gorse, et al.. A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown. Molecular Ecology, Wiley, In press, ⟨10.1111/mec.16294⟩. ⟨hal-03510966⟩
  • Méline Saubin, Stéphane de Mita, Xujia Zhu, Bruno Sudret, Fabien Halkett. Impact of ploidy and pathogen life cycle on resistance durability. Peer Community in Evolutionary Biology, Peer Community in, 2021, ⟨10.24072/pcjournal.10⟩. ⟨hal-03610230⟩
  • Agathe Maupetit, Bénédicte Fabre, Jérémy Pétrowski, Axelle Andrieux, Stéphane de Mita, et al.. Evolution of morphological but not aggressiveness‐related traits following a major resistance breakdown in the poplar rust fungus, Melampsora larici‐populina. Evolutionary Applications, Blackwell, 2020, ⟨10.1111/eva.13136⟩. ⟨hal-03052529⟩
  • Ivan Yegorov, Frédéric Grognard, Ludovic L. Mailleret, Fabien Halkett, Pierre Bernhard. A dynamic game approach to uninvadable strategies for biotrophic pathogens. Dynamic Games and Applications, Springer Verlag, 2020, 10, pp.257-296. ⟨10.1007/s13235-019-00307-1⟩. ⟨hal-02147836⟩
  • Agathe Maupetit, Romain Larbat, Michaël Pernaci, Axelle Andrieux, Cécile Guinet, et al.. Defense Compounds Rather Than Nutrient Availability Shape Aggressiveness Trait Variation Along a Leaf Maturity Gradient in a Biotrophic Plant Pathogen. Frontiers in Plant Science, Frontiers, 2018, 9, pp.1-13. ⟨10.3389/fpls.2018.01396⟩. ⟨hal-01901489⟩
  • Pascal Frey, Katherine J. Hayden, Fabien Halkett. Émergence de maladies sur peupliers ou la course aux armements entre l’améliorateur et les maladies (Résumé). Revue forestière française, AgroParisTech, 2018, 70 (6), pp.643-644. ⟨10.4267/2042/70315⟩. ⟨hal-03447441⟩
  • Herminia de La Varga Pastor, François Le Tacon, Mélanie Lagoguet, Flora Todesco, Torda Varga, et al.. Five years investigation of female and male genotypes in périgord black truffle (Tuber melanosporum Vittad.) revealed contrasted reproduction strategies. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (7), pp.2604-2615. ⟨10.1111/1462-2920.13735⟩. ⟨hal-01595244⟩
  • Antoine Persoons, Katherine Hayden, Bénédicte Fabre, Pascal Frey, Stéphane de Mita, et al.. The escalatory Red Queen: Population extinction and replacement following arms race dynamics in poplar rust. Molecular Ecology, Wiley, 2017, 26 (7), pp.1902-1918. ⟨10.1111/mec.13980⟩. ⟨hal-01564550⟩
  • Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Molecular Ecology Resources, Wiley/Blackwell, 2017, 17 (6), pp.e251-e267. ⟨10.1111/1755-0998.12698⟩. ⟨hal-01608371⟩
  • Ronan Becheler, Constance Xhaard, Etienne K. Klein, Katherine J. Hayden, Pascal Frey, et al.. Genetic signatures of a range expansion in natura: when clones play leapfrog. Ecology and Evolution, Wiley Open Access, 2016, 6 (18), pp.6625-6632. ⟨10.1002/ece3.2392⟩. ⟨hal-01512000⟩
  • Jaime Aguayo, Fabien Halkett, Claude Husson, András Szigethy, József Bakonyi, et al.. Genetic Diversity and Origins of the Homoploid-Type Hybrid Phytophthora ×alni. Applied and Environmental Microbiology, American Society for Microbiology, 2016, 82 (24), pp.7142-7153. ⟨10.1128/AEM.02221-16⟩. ⟨hal-01494736⟩
  • Christel Leyronas, Fabien Halkett, Philippe C. Nicot. Relationship between the genetic characteristics of Botrytis sp. airborne inoculum and meteorological parameters, seasons and the origin of air masses. Aerobiologia, Springer Verlag, 2015, 31 (3), pp.367-380. ⟨10.1007/s10453-015-9370-x⟩. ⟨hal-01268891⟩
  • Antoine Persoons, Emmanuelle Morin, Christine Delaruelle, Thibaut Payen, Fabien Halkett, et al.. Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors. Frontiers in Plant Science, Frontiers, 2014, 5, ⟨10.3389/fpls.2014.00450⟩. ⟨hal-01269012⟩
  • Claude Murat-Furminieux, Herminia de La Varga Pastor, Emila Akroume, François Le Tacon, Christophe Robin, et al.. Dynamique de la reproduction sexuée.. Le Trufficulteur, 2014, 87 (2), pp.14. ⟨hal-01269190⟩
  • Michaël Pernaci, Stéphane de Mita, Axelle Andrieux, Jeremy Petrowski, Fabien Halkett, et al.. Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina. Frontiers in Plant Science, Frontiers, 2014, 5, ⟨10.3389/fpls.2014.00454⟩. ⟨hal-01269013⟩
  • Jaime Aguayo-Silva, Gerard C. Adams, Fabien Halkett, Mursel Catal, Claude Husson, et al.. Strong Genetic Differentiation Between North American and European Populations of Phytophthora alni subsp. uniformis.. Phytopathology, American Phytopathological Society, 2013, 103 (2), pp.190-199. ⟨10.1094/PHYTO-05-12-0116-R⟩. ⟨hal-01136978⟩
  • Claude Murat-Furminieux, Andrea Rubini, Claudia Riccioni, Herminia de La Varga Pastor, Emila Akroume, et al.. Fine-scale spatial genetic structure of the black truffle (Tuber melanosporum) investigated with neutral microsatellites and functional mating type genes. New Phytologist, Wiley, 2013, 199 (1), pp.176-187. ⟨10.1111/nph.12264⟩. ⟨hal-01268448⟩
  • Bénédicte Pariaud, Henriette Goyeau, Fabien Halkett, Corinne Robert, Christian Lannou. Variation in aggressiveness is detected among Puccinia triticina isolates of the same pathotype and clonal lineage in the adult plant stage. European Journal of Plant Pathology, Springer Verlag, 2012, 134 (4), pp.733-743. ⟨10.1007/s10658-012-0049-7⟩. ⟨hal-01000751⟩
  • Constance Xhaard, Benoît Barres, Axelle Andrieux, Lydia Bousset-Vaslin, Fabien Halkett, et al.. Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach. Molecular Ecology, Wiley, 2012, 21 (10), pp.2383-2398. ⟨10.1111/j.1365-294X.2012.05556.x⟩. ⟨hal-01191214⟩
  • Adrien Rieux, Fabien Halkett, L. de Lapeyre de Bellaire, M-F. Zapater, F. Rousset, et al.. Inferences on pathogenic fungus population structures from microsatellite data: new insights from spatial genetics approaches. Molecular Ecology, Wiley, 2011, 20 (8), pp.1661 - 1674. ⟨10.1111/j.1365-294X.2011.05053.x⟩. ⟨hal-02651924⟩
  • Constance Xhaard, Bénédicte Fabre, Axelle Andrieux, P. Gladieux, Benoît Barres, et al.. The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication. Molecular Ecology, Wiley, 2011, 20 (13), pp.2739-2755. ⟨10.1111/j.1365-294X.2011.05138.x⟩. ⟨hal-01136973⟩
  • Aurore A. Philibert, Marie Laure M. L. Desprez Loustau, Bénédicte Fabre, Pascal Frey, Fabien Halkett, et al.. Predicting invasion success of forest pathogenic fungi from species traits. Journal of Applied Ecology, Wiley, 2011, 48 (6), pp.1381 - 1390. ⟨10.1111/j.1365-2664.2011.02039.x⟩. ⟨hal-01000012⟩
  • Fabien Halkett, D. Coste, G.G. Rivas Platero, Marie-Françoise Zapater, Catherine Abadie, et al.. Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis. Molecular Ecology, Wiley, 2010, 19 (18), pp.3909-3923. ⟨10.1111/j.1365-294X.2010.04774.x⟩. ⟨hal-02656829⟩
  • Chabi Fabrice Elegbede, J-Claude Pierrat, Jaime Aguayo-Silva, Claude Husson, Fabien Halkett, et al.. A statistical model to detect asymptomatic infectious individuals with an application in the Phytophthora alni-induced alder decline. Phytopathology, American Phytopathological Society, 2010, 100 (11), pp.1262-1269. ⟨10.1094/PHYTO-05-10-0140⟩. ⟨hal-01195036⟩
  • Benedicte B. Pariaud, V. Ravigné, Fabien Halkett, Henriette H. Goyeau, Jean Carlier, et al.. Aggressiveness and its role in the adaptation of plant pathogens. Plant Pathology, Wiley, 2009, 58 (3), pp.409-424. ⟨10.1111/j.1365-3059.2009.02039.x⟩. ⟨hal-02668732⟩
  • Constance Xhaard, Axelle Andrieux, Fabien Halkett, Pascal Frey. Characterization of 41 microsatellite loci developed from the genome sequence of the poplar rust fungus, Melampsora larici-populina. Conservation Genetics Resources, Springer, 2009, 1 (1), pp.21-25. ⟨10.1007/s12686-009-9005-z⟩. ⟨hal-02667477⟩
  • Benoît Barres, Fabien Halkett, Christian Cyril Dutech, Axelle Andrieux, Jean Pinon, et al.. Genetic structure of the poplar rust fungus Melampsora larici-populina : Evidence for isolation by distance in Europe and recent founder effects overseas. Infection, Genetics and Evolution, Elsevier, 2008, 8 (5), pp.577-587. ⟨10.1016/j.meegid.2008.04.005⟩. ⟨hal-02669196⟩
  • Anne Dalmon, Fabien Halkett, Martine Granier, Hélène Delatte, Michel Peterschmitt. Genetic structure of the invasive pest Bemisia tabaci: evidence of limited but persistent genetic differentiation in glasshouse populations. Heredity, Nature Publishing Group, 2008, 100 (4), pp.316-325. ⟨10.1038/sj.hdy.6801080⟩. ⟨hal-02664416⟩
  • Henriette H. Goyeau, Fabien Halkett, Marie-Françoise Zapater, Jean Carlier, Christian C. Lannou. Clonality and host selection in the wheat pathogenic fungus Puccinia triticina. Fungal Genetics and Biology, Elsevier, 2007, 44 (6), pp.474-483. ⟨10.1016/j.fgb.2007.02.006⟩. ⟨hal-02666081⟩
  • Fabien Halkett, P. Kindlmann, Manuel Plantegenest, P. Sunnucks, Jean-Christophe Simon. Temporal differentiation and spatial coexistence of sexual and facultative asexual lineages of an aphid species at mating sites. Journal of Evolutionary Biology, Wiley, 2006, 19 (3), pp.809-815. ⟨10.1111/j.1420-9101.2005.01055.x⟩. ⟨hal-02663205⟩
  • Fabien Halkett, Jean-Christophe Simon, F. Balloux. Tackling the population genetics of clonal and partially clonal organisms. Trends in Ecology and Evolution, Elsevier, 2005, 20 (4), pp.194-201. ⟨10.1016/j.tree.2005.01.001⟩. ⟨hal-02682235⟩
  • Fabien Halkett, Manuel Plantegenest, Nathalie Prunier-Leterme, Lucie Mieuzet, François F. Delmotte, et al.. Admixed sexual and facultatively asexual aphid lineages at mating sites. Molecular Ecology, Wiley, 2005, 14 (1), pp.325-336. ⟨10.1111/j.1365-294X.2004.02358.x⟩. ⟨hal-02675684⟩
  • Fabien Halkett, Richard Harrington, Maurice Hulle, Pavel Kindlmann, Frédéric Menu, et al.. Dynamics of Production of Sexual Forms in Aphids: Theoretical and Experimental Evidence for Adaptive “Coin‐Flipping” Plasticity. American Naturalist, University of Chicago Press, 2004, 163 (6), pp.E112-E125. ⟨10.1086/383618⟩. ⟨hal-02683454⟩

Conference papers34 documents

  • Christel Leyronas, Fabien Halkett, Cindy E. Morris, Maria Choufany, Samuel Soubeyrand. White and grey molds, where do you come from? A comparative study on inoculum of B. cinerea and S. sclerotiorum. 18. International Botrytis Symposium & 17. International Sclerotinia Workshop, Unité de pathologie végétale, Avignon, INRAE; Unité de recherche Plantes et systèmes de culture horticoles, INRAE; Unité Biologie gestion des risques en agriculture, INRAE; Avignon université, Jun 2022, Avignon, France. ⟨hal-03695253⟩
  • Louet C, Méline Saubin, Axelle Andrieux, A. Persoons, Gorce M, et al.. Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance gene. Molecular Mechanism & Structure— Zooming in on Plant Immunity, Jul 2021, e-symposia, Germany. ⟨hal-03588311⟩
  • Clémentine Louet, Méline Saubin, Antoine Persoons, Axelle Andrieux, Bénédicte Fabre, et al.. From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populina. Réunion 2020 du groupe "champignons phytopathogènes", Nov 2020, aucune (visio), France. ⟨hal-03336539⟩
  • Fabien Halkett, Ivan Yegorov, Frédéric Fabre, Virginie Ravigné, Pascal Frey, et al.. Optimal infection dynamics in spore producing pathogens: reconciling theory with experiment for the study of host-parasite interactions. 3rd Wild Plant Pathosystems Conference, Sep 2019, Frankfurt, Germany. ⟨hal-03336458⟩
  • Frédéric Grognard, Ivan Yegorov, Julien Guegan, Ludovic Mailleret, Fabien Halkett, et al.. Uninvadable strategies for biotrophic pathogens, from dynamic games to adaptive dynamics. 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Jul 2018, Lisbon, Portugal. ⟨hal-01940820⟩
  • Agathe Maupetit, Katherine Hayden, Pascal Frey, Stéphane de Mita, Fabien Halkett. Evolutionary potential of aggressiveness related traits in the poplar rust fungus, Melampsora larici-populina. 12. Rencontres de Phytopathologie - Mycologie - JJC 2018 Journée Jean Chevaugeon, Jan 2018, Aussois, France. ⟨hal-03336266⟩
  • Pascal Frey, Katherine Hayden, Fabien Halkett. Emergence de maladies sur peupliers ou la course aux armements entre l’améliorateur et les maladies. Regefor Atelier Recherche et Gestion Forestières. Emergence de bioagresseurs en forêt : Comment identifier et atténuer les risques ?, Jun 2017, Champenoux, France. ⟨hal-02791243⟩
  • Pascal Frey, Constance Xhaard, Michaël Pernaci, Ronan Becheler, Katherine Hayden, et al.. When a plant pathogen runs down a river: Population genetics of the poplar rust epidemics in the Durance River valley. 12. European Foundation for Plant Pathology (EFPP) ; 10. French Society for Plant Pathology (SFP) Conference, May 2017, Dunkerque Malo-les-Bains, France. ⟨hal-02788429⟩
  • Michaël Pernaci, Agathe Maupetit, Stéphane de Mita, Bénédicte Fabre, Sébastien Duplessis, et al.. Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungus. International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Monte Verità Conference Center, Ascona, Switzerland. ⟨hal-02785090⟩
  • Agathe Maupetit, Antoine Persoons, Vincent Segura, Thomas Coudoux, Pascal Frey, et al.. Conséquences génomiques de l’adaptation à l’hôte chez l’agent de la rouille du peuplier. 38. colloque Le Petit Pois Déridé, réunion du Groupe de Génétique et Biologie des Populations, Jun 2017, Saclay, France. 1 p. ⟨hal-02788070⟩
  • Fabien Halkett, Antoine Persoons, Agathe Maupetit, Sébastien Duplessis, Pascal Frey, et al.. Demographic and genomic consequences of a major selective event in the poplar rust. International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland. ⟨hal-02790211⟩
  • Ivan Yegorov, Frédéric Grognard, Ludovic Mailleret, Fabien Halkett. Optimal resource allocation for biotrophic plant pathogens. IFAC 2017 - 20th World Congress of the International Federation of Automatic Control, International Federation of Automatic Control (IFAC). AUT., Jul 2017, Toulouse, France. pp.1-6, ⟨10.1016/j.ifacol.2017.08.328⟩. ⟨hal-01572090⟩
  • Katherine Hayden, Bénédicte Fabre, Fabien Halkett, Pascal Frey. Adaptation of poplar rust to the poplar varietal landscape. 11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. ⟨hal-01604529⟩
  • Ronan Becheler, Henriette Goyeau, Solenn Stoeckel, Fabien Halkett. Exemple de « vieilles » lignées asexuées chez les rouilles : Effet Meselson ou dérive ?. Réunion 2016 du groupe "champignons phytopathogènes", Nov 2016, Paris, France. ⟨hal-02795478⟩
  • Michaël Pernaci, Stéphane de Mita, Bénédicte Fabre, Sébastien Duplessis, Fabien Halkett, et al.. Mapping QTL of aggressiveness traits in the poplar rust fungus. 9eme Colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France. ⟨hal-02792933⟩
  • Katherine Hayden, Bénédicte Fabre, Jeremy Petrowski, Fabien Halkett, Pascal Frey. Quantitative trait evolution within a qualitative resistance breakdown. 5. International Conference on Genetics of Tree-Parasite Interactions: Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France. ⟨hal-02794919⟩
  • Antoine Persoons, Fabien Halkett, Stéphane de Mita, Sébastien Duplessis. Identification of candidate effectors in the poplar rust fungus Melampsora larici-populina through a population genomics approach. 28. Fungal Genetics Conference, Mar 2015, Asilomar, Pacific Grove, CA, United States. ⟨hal-02792660⟩
  • Michaël Pernaci, Stéphane de Mita, Bénédicte Fabre, Sébastien Duplessis, Fabien Halkett, et al.. Mapping QTL of aggressiveness traits in the poplar rust fungus. 5. International Conference on Genetics of Tree-Parasite Interactions : Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France. ⟨hal-02793206⟩
  • Michaël Pernaci, Stéphane de Mita, Bénédicte Fabre, Sébastien Duplessis, Fabien Halkett, et al.. On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus. Réunion annuelle 2015 du Réseau Ecologie des Interactions Durables, Mar 2015, Lyon, France. ⟨hal-02792666⟩
  • Michaël Pernaci, Stéphane de Mita, Bénédicte Fabre, Axelle Andrieux, Fabien Halkett, et al.. On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus. IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States. ⟨hal-02792679⟩
  • Antoine Persoons, Stéphane de Mita, Fabien Halkett, Sébastien Duplessis. Identification d’effecteurs de Melampsora larici-populina par une approche originale : de la génomique des populations à la génomique fonctionnelle. 10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France. 116 p. ⟨hal-02742734⟩
  • Benjamin Petre, Stéphane S. Hacquard, Antoine Persoons, Emilie Tisserant, Emmanuelle Morin, et al.. Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina. IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States. ⟨hal-02801804⟩
  • Michaël Pernaci, Stéphane de Mita, Bénédicte Fabre, Axelle Andrieux, Fabien Halkett, et al.. Étude du déterminisme génétique des traits de vie qualitatifs et quantitatifs de Melampsora larici-populina, agent de la rouille foliaire du peuplier. 10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France. ⟨hal-02800971⟩
  • Katherine Hayden, Constance Xhaard, Bénédicte Fabre, Fabien Halkett, Pascal Frey. Adaptation de la rouille du peuplier au paysage variétal populicole en France. 14. Rencontres du Groupe Français de Pathologie Forestière, Oct 2014, Hendaye, France. ⟨hal-01606751⟩
  • Katherine Hayden, Bénédicte Fabre, Jeremy Petrowski, Fabien Halkett, Pascal Frey. Pathogen adaptation to a shifting host landscape: Qualitative and quantitative trait interactions in the poplar-poplar rust pathosystem. Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Max Planck Institute for Terrestrial Microbiology. DEU., Nov 2014, Nancy, France. ⟨hal-02800432⟩
  • Antoine Persoons, Emmanuelle Morin, Christine Delaruelle, Thibaut Payen, Fabien Halkett, et al.. Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors. Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France. ⟨hal-02794927⟩
  • Katherine Hayden, Constance Xhaard, Bénédicte Fabre, Fabien Halkett, Pascal Frey. Adaptation of poplar rust to the poplar varietal landscape. IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States. ⟨hal-02792367⟩
  • Christel Leyronas, Samuel Soubeyrand, Olivier Martin, Fabien Halkett, Philippe C. Nicot. Origine de l'inoculum aérien de [i]Botrytis cinerea[/i] : sources locales vs introduction à partir de sources éloignées ?. Journée sur la biologie des populations introduites, Nov 2013, Sophia-Antipolis, France. ⟨hal-01268386⟩
  • Constance Xhaard, Frédéric Fabre, Jérôme Coville, Fabien Halkett, Samuel Soubeyrand. Modélisation spatio-temporelle du déroulement d’une épidémie de rouille du peuplier dans la vallée de la Durance. 7. Rencontres Statistiques au Sommet de Rochebrune, Apr 2012, Megève, France. ⟨hal-01267965⟩
  • Fabien Halkett, Audrey Andanson, Bénédicte Fabre, Elisabeth E. Fournier, Pascal Frey, et al.. Un cadre théorique pour étudier les interactions plantes - champignons pathogènes foliaires. 8. Congrès national de la Société Française de Phytopathologie, Jun 2012, Paris, France. p.54. ⟨hal-02802411⟩
  • Marie Laure Desprez Loustau, Pascal Frey, Fabien Halkett, Claude Husson, Brigitte Lung, et al.. Predicting invasion success in forest pathogenic fungi from species traits?. Conference Jacques Monod on ‘New and Emerging Fungal Diseases of Animals and Plants”, Jun 2011, Roscoff, France. ⟨hal-01173287⟩
  • Audrey Andanson, Elisabeth E. Fournier, F. Grognard, Fabien Halkett, Ludovic Mailleret, et al.. Un cadre théorique pour étudier les interactions plantes - champignons pathogènes foliaires. 8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France. ⟨hal-02756003⟩
  • Virginie Ravigné, Audrey Andanson, Bénédicte Fabre, Pascal Frey, Elisabeth Fournier, et al.. Un cadre théorique pour étudier les interactions plantes-champignons pathogènes foliaires. Premier Colloque National d'Ecologie Scientifique, 2010, Montpellier, France. ⟨hal-00853204⟩
  • Cyril Dutech, Virginie Ravigné, Fabien Halkett, Elisabeth Fournier, Jean Carlier. Que nous raconte l'analyse des structures génétiques sur la dispersion des champignons phytopathogènes ?. 7. Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie. Journées Jean Chevaugeon, Jan 2008, Aussois, France. 14 diapositives. ⟨hal-02816891⟩

Poster communications10 documents

  • Méline Saubin, Stéphane de Mita, Fabien Halkett. Impact of ploidy and pathogen life cycle on resistance durability. 18th Ecology and Evolution of Infectious Diseases, Jun 2021, (Online), France. ⟨hal-03336582⟩
  • Méline Saubin, Clémentine Louet, Stéphane de Mita, Antoine Persoons, Axelle Andrieux, et al.. Evolutionary dynamics of virulence spread: effects of life cycle, genetic determinism and host resistance deployment. Sex and Asex: The Genetics of Complex Life-Cycles, Jun 2019, Portland (Oregon), United States. ⟨hal-03336443⟩
  • Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time steps. Jacques Monod conference "Sex uncovered: the evolutionary biology of reproductive systems", Apr 2018, Roscoff, France. ⟨hal-03336667⟩
  • Agathe Maupetit, Katherine Hayden, Vincent Segura, Romain Larbat, Stéphane de Mita, et al.. Genetic architecture of pathogenicity-associated traits in the poplar rust fungus, Melampsora larici-populina. Evolution 2018 Montpellier, Aug 2018, Montpellier, France. ⟨hal-03336361⟩
  • Agathe Maupetit, Michaël Pernaci, Bénédicte Fabre, Sébastien Duplessis, Stéphane de Mita, et al.. Genetic architecture of pathogenicity-related life history traits in the poplar rust fungus. 11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. 96 p., 2016, 11èmes Journées Jean Chevaugeon. 25–29 janvier 2016. Centre Paul Langevin, Aussois (France). ⟨hal-02740999⟩
  • Sébastien Duplessis, Stéphane de Mita, Fabien Halkett, Pascal Frey. Update on Melampsora larici-populina genomics. 13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France. ⟨hal-03253579⟩
  • Christel Leyronas, Philippe C. Nicot, Fabien Halkett, Olivier Martin, Samuel Soubeyrand. Caractérisation de l'inoculum aérien de[i] Botrytis cinerea[/i] pour la prévision des épidémies de pourriture grise. 9. colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France. 2015, 9. Colloque de la société française de phytopathologie. Livre des résumés. Du 2 au 5 juin 2015, Colmar, "la cité de Bartholdi". ⟨hal-01269044⟩
  • Katherine Hayden, Bénédicte Fabre, Fabien Halkett, Pascal Frey. Adaptation of poplar rust to the poplar varietal landscape. 10. Rencontres de Phytopathologie - Mycologie. Journées Jean Chevaugeon, Jan 2014, Aussois, France. 2014, Journées Jean Chevaugeon 2014. 10es Rencontres de phytopathologie-mycologie de la Société Française de Phytopahologie (SFP). 27 au 31 janvier 2014. Centre Paul Langevin, CAES du CNRS Aussois (Savoie) – France. ⟨hal-02739666⟩
  • Claude Murat, Herminia de La Varga, Emila Akroume, François Le Tacon, Christophe Robin, et al.. Structure génétique spatiale de la truffe noire du Périgord (Tuber melanosporum) dans une plantation productive analysée par marqueurs microsatellites et les gènes de compatibilité sexuelle. 10. Rencontres de Phytopathologie - Mycologie. Journées Jean Chevaugeon, Jan 2014, Aussois, France. 2014, Journées Jean Chevaugeon 2014. 10es Rencontres de phytopathologie-mycologie de la Société Française de Phytopahologie (SFP). 27 au 31 janvier 2014. Centre Paul Langevin, CAES du CNRS Aussois (Savoie) – France. ⟨hal-02743213⟩
  • Christel Leyronas, Philippe C. Nicot, Fabien Halkett. Evolution temporelle des caractéristiques génétiques de l’inoculum aérien de Botrytis cinerea un champignon pathogène extrêmement polyphage. 34. Réunion annuelle du Groupe d’Etude de Biologie et Génétique des Populations (Petit Pois Déridé 2012), Aug 2012, Avignon, France. 2012, Petit Pois Déridé 2012. Avignon, du 28 au 31 août 2012. Actes du colloque. Session 7 «Dispersion, épidémiologie et biologie des invasions». ⟨hal-01267798⟩

Book sections3 documents

  • Bénédicte Fabre, Catherine Bastien, Claude Husson, Benoit Marçais, Pascal Frey, et al.. Un effet papillon dans les peupleraies françaises : les répercussions d’un contournement de résistance sur les méthodes de sélection variétale. L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.329-339, 2021, 9782759232338. ⟨hal-03324138⟩
  • Fabien Halkett, Christian Lannou, Christophe Le May, Josselin Montarry, Julien J. Papaix, et al.. L'adaptation des agents pathogènes de plantes aux systèmes cultivés : une évolution sous contraintes anthropiques. L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.125-134, 2021, 9782759232338. ⟨hal-03316033⟩
  • Henriette Goyeau, Fabien Halkett, Bruno Le Cam, Josselin Montarry, Christophe Le May. Les contournements de résistance : Mécanismes, dynamiques et conséquences. L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, 2021, 9782759232338. ⟨hal-03316038⟩

Other publications1 document

  • Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate 1.01. 2016. ⟨hal-01608300⟩

Preprints, Working Papers, ...1 document

  • Méline Saubin, Clémentine Louet, Lydia Bousset, Frédéric Fabre, Isabelle Fudal, et al.. Improving the design of sustainable crop protection strategies thanks to population genetics concepts. 2021. ⟨hal-03394837⟩

Reports1 document

  • Catherine Bastien, Jose-Luis Almeida Falcon, Nicolas Chenault, Arnaud A. Dowkiw, Vanina Guérin, et al.. INTERPOPGER Interactions entre peupleraies naturelles et cultivées et pressions évolutives liées à leurs modes de gestion. Bilan scientifique 2005‐2008. 2008. ⟨hal-02824228⟩

Lectures2 documents

  • Fabien Halkett, Stéphane de Mita. Introduction à la génétique et à la génomique des populations. Master FAGE UE8.16 (Introduction à la génétique des populations), 2017, 68 p. ⟨hal-02789805⟩
  • Fabien Halkett, Jacominus van Baalen, Manuel Plantegenest. Evolution et Adaptation des agents pathogènes. Master Biologie et écologie pour la Forêt, l’Agronomie et la Gestion des Ecosystèmes (FAGE) : UE8.16 (Evolution et Adaptation des agents pathogènes), 2017, 79 p. ⟨hal-02788489⟩