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Fabien Crauste - CV


Directeur de Recherches CNRS (depuis 2019) - Section 41 & CID 51

Chargé de Recherches CNRS (2006 - 2019) - Section 41 & CID 51

Directeur du GDR MathSAV (Mathématiques, Santé, Sciences de la Vie)

Affiliation (2020 - ...) : Laboratoire MAP5 UMR 8145, Université Paris Cité, Paris

Affiliation (2018 - 2020) : Institut de Mathématiques de Bordeaux UMR 5251, Université de Bordeaux, Bordeaux

Affiliation (2006 - 2018) : Institut Camille Jordan UMR 5208, Université de Lyon, Lyon

Affiliation (2011 - 2018) : Equipe projet Inria DRACULA, Centre Inria Grenoble Rhône Alpes, Lyon


Journal articles52 documents

  • Elena Merino Tejero, Danial Lashgari, Rodrigo García-Valiente, Xuefeng Gao, Fabien Crauste, et al.. Multiscale Modeling of Germinal Center Recapitulates the Temporal Transition From Memory B Cells to Plasma Cells Differentiation as Regulated by Antigen Affinity-Based Tfh Cell Help. Frontiers in Immunology, Frontiers, 2021, 11, ⟨10.3389/fimmu.2020.620716⟩. ⟨hal-03153711⟩
  • Chloe Audebert, Daphné Laubreton, Christophe Arpin, Olivier Gandrillon, Jacqueline Marvel, et al.. Modeling and characterization of inter-individual variability in CD8 T cell responses in mice. In Silico Biology, IOS Press, 2021, 14 (1-2), pp.13-39. ⟨10.3233/ISB-200205⟩. ⟨hal-03136073⟩
  • Ronan Duchesne, Anissa Guillemin, Olivier Gandrillon, Fabien Crauste. Practical identifiability in the frame of nonlinear mixed effects models: the example of the in vitro erythropoiesis. BMC Bioinformatics, BioMed Central, 2021, pp.1-21. ⟨10.1186/s12859-021-04373-4⟩. ⟨hal-03364480⟩
  • Irene Balelli, Chloé Pasin, Mélanie Prague, Fabien Crauste, Thierry van Effelterre, et al.. A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus. Journal of Theoretical Biology, Elsevier, 2020, 495, pp.110254. ⟨10.1016/j.jtbi.2020.110254⟩. ⟨hal-03160892v2⟩
  • Ronan Duchesne, Anissa Guillemin, Fabien Crauste, Olivier Gandrillon. Calibration, Selection and Identifiability Analysis of a Mathematical Model of the in vitro Erythropoiesis in Normal and Perturbed Contexts. In Silico Biology, IOS Press, 2019, 13 (1-2), pp.55-69. ⟨10.3233/ISB-190471⟩. ⟨hal-02309925⟩
  • Simon Girel, Christophe Arpin, Jacqueline Marvel, Olivier Gandrillon, Fabien Crauste. Model-based assessment of the Role of Uneven Partitioning of Molecular Content on Heterogeneity and Regulation of Differentiation in CD8 T-cell Immune Responses. Frontiers in Immunology, Frontiers, In press, pp.1-41. ⟨10.3389/fimmu.2019.00230⟩. ⟨hal-02008705⟩
  • Anissa Guillemin, Ronan Duchesne, Fabien Crauste, Sandrine Gonin-Giraud, Olivier Gandrillon. Drugs modulating stochastic gene expression affect the erythroid differentiation process. PLoS ONE, Public Library of Science, 2019, 14 (11), pp.1-19. ⟨10.1371/journal.pone.0225166⟩. ⟨hal-02375801⟩
  • Loïs Boullu, Mostafa Adimy, Fabien Crauste, Laurent Pujo-Menjouet. Oscillations and asymptotic convergence for a delay differential equation modeling platelet production. Discrete and Continuous Dynamical Systems - Series B, American Institute of Mathematical Sciences, 2019, 24 (6), pp.2417-2442. ⟨10.3934/dcdsb.2018259⟩. ⟨hal-01835435v2⟩
  • Loic Barbarroux, Philippe Michel, Mostafa Adimy, Fabien Crauste. A multiscale model of the CD8 T cell immune response structured by intracellular content. Discrete and Continuous Dynamical Systems - Series B, American Institute of Mathematical Sciences, 2018, 23 (9), pp.3969-4002. ⟨10.3934/dcdsb.2018120⟩. ⟨hal-01969237⟩
  • Oscar Angulo, Olivier Gandrillon, Fabien Crauste. Investigating the role of the experimental protocol in phenylhydrazine-induced anemia on mice recovery. Journal of Theoretical Biology, Elsevier, 2018, 437, pp.286 - 298. ⟨10.1016/j.jtbi.2017.10.031⟩. ⟨hal-01646792⟩
  • Simon Girel, Fabien Crauste. Existence and stability of periodic solutions of an impulsive differential equation and application to CD8 T-cell differentiation. Journal of Mathematical Biology, Springer Verlag (Germany), 2018, 76 (7), pp.1765-1795. ⟨10.1007/s00285-018-1220-3⟩. ⟨hal-01721728⟩
  • Oscar Angulo, Fabien Crauste, Juan Carlos López-Marcos. Numerical integration of an erythropoiesis model with explicit growth factor dynamics. Journal of Computational and Applied Mathematics, Elsevier, 2018, 330, pp.770 - 782. ⟨10.1016/j.cam.2017.01.033⟩. ⟨hal-01646786⟩
  • Fabien Crauste, Julien Mafille, Lilia Boucinha, Sophia Djebali, Olivier Gandrillon, et al.. Identification of Nascent Memory CD8 T Cells and Modeling of Their Ontogeny. Cell Systems, Elsevier, 2017, 4 (3), pp.306-317. ⟨10.1016/j.cels.2017.01.014⟩. ⟨hal-01409637⟩
  • Xuefeng Gao, Christophe Arpin, Jacqueline Marvel, Sotiris A. Prokopiou, Olivier Gandrillon, et al.. IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8+ T cell-APC: a multiscale modeling study. BMC Systems Biology, BioMed Central, 2016, 10 (1), pp.77. ⟨10.1186/s12918-016-0323-y⟩. ⟨inserm-01354185⟩
  • Samuel Bernard, Fabien Crauste. Optimal linear stability condition for scalar differential equations with distributed delay. Discrete and Continuous Dynamical Systems - Series B, American Institute of Mathematical Sciences, 2015, 20 (7), ⟨10.3934/dcdsb.2015.20.1855⟩. ⟨hal-00997528⟩
  • Fabien Crauste, Emmanuelle Terry, I Le Mercier, Julien Mafille, Sophie Djebali, et al.. Predicting pathogen-specific CD8 T cell immune responses from a modeling approach.. Journal of Theoretical Biology, Elsevier, 2015, 374, pp.66-82. ⟨10.1016/j.jtbi.2015.03.033⟩. ⟨hal-00717406v2⟩
  • Marine Jacquier, Hédi A. Soula, Fabien Crauste. A mathematical model of leptin resistance. Mathematical Biosciences, Elsevier, 2015, 267, ⟨10.1016/j.mbs.2015.06.008⟩. ⟨hal-01233483⟩
  • Marine Jacquier, Fabien Crauste, Christophe Soulage, Hédi A Soula. A predictive model of the dynamics of body weight and food intake in rats submitted to caloric restrictions.. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e100073. ⟨10.1371/journal.pone.0100073⟩. ⟨hal-01017357⟩
  • Sotiris Prokopiou, Loic Barbarroux, Samuel Bernard, Julien Mafille, Yann Leverrier, et al.. Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study. Computation, MDPI, 2014, 2 (4), pp.159-181. ⟨10.3390/computation2040159⟩. ⟨hal-01074736⟩
  • Mostafa Adimy, Fabien Crauste. Delay Differential Equations and Autonomous Oscillations in Hematopoietic Stem Cell Dynamics Modeling. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2012, 7 (6), pp.1-22. ⟨10.1051/mmnp/20127601⟩. ⟨hal-00766339⟩
  • Emmanuelle Terry, Jacqueline Marvel, Christophe Arpin, Olivier Gandrillon, Fabien Crauste. Mathematical model of the primary CD8 T cell immune response: stability analysis of a nonlinear age-structured system.. Journal of Mathematical Biology, Springer Verlag (Germany), 2012, 65, pp.263-291. ⟨10.1007/s00285-011-0459-8⟩. ⟨hal-00649219⟩
  • S. Fischer, P. Kurbatova, N. Bessonov, Olivier Gandrillon, Vitaly Volpert, et al.. Modeling erythroblastic islands: using a hybrid model to assess the function of central macrophage.. Journal of Theoretical Biology, Elsevier, 2012, 298, pp.92-106. ⟨10.1016/j.jtbi.2012.01.002⟩. ⟨hal-00596682v2⟩
  • Polina Kurbatova, Samuel Bernard, Nikolai Bessonov, Fabien Crauste, Ivan Demin, et al.. HYBRID MODEL OF ERYTHROPOIESIS AND LEUKEMIA TREATMENT WITH CYTOSINE ARABINOSIDE. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2011, 71 (6), pp.2246-2268. ⟨10.1137/100815517⟩. ⟨hal-00538496v2⟩
  • Nikolai Bessonov, Fabien Crauste, Vitaly Volpert. Modelling of Plant Growth with Apical or Basal Meristem. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2011, 6 (2), pp.107-132. ⟨10.1051/mmnp/20116204⟩. ⟨hal-00649218⟩
  • Nikolai Bessonov, Fabien Crauste, Stephan Fisher, Polina Kurbatova, Vitaly Volpert. Application of Hybrid Models to Blood Cell Production in the Bone Marrow. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2011, 6 (7), pp.2-12. ⟨10.1051/mmnp/20116701⟩. ⟨hal-00649217⟩
  • Fabien Crauste. A review on local asymptotic stability analysis for mathematical models of hematopoiesis with delay and delay-dependent coefficients. Annals of the Tiberiu Popoviciu Seminar of functional equations, approximation and convexity, Zentralblatt fur Mathematik / Mathematical Reviews, 2011, 9, pp.121-143. ⟨hal-00750271⟩
  • Mostafa Adimy, Fabien Crauste, Abderrahim El Abdllaoui. Boundedness and Lyapunov Function for a Nonlinear System of Hematopoietic Stem Cell Dynamics. Comptes Rendus. Mathématique, Académie des sciences (Paris), 2010, 348 (7-8), pp.373-377. ⟨10.1016/j.crma.2010.02.018⟩. ⟨hal-00542477⟩
  • Fabien Crauste, Ivan Demin, Olivier Gandrillon, Vitaly Volpert. Mathematical study of feedback control roles and relevance in stress erythropoiesis.. Journal of Theoretical Biology, Elsevier, 2010, 263 (3), pp.303-16. ⟨10.1016/j.jtbi.2009.12.026⟩. ⟨hal-00542457⟩
  • Ivan Demin, Fabien Crauste, Olivier Gandrillon, Vitaly Volpert. A multi-scale model of erythropoiesis. Journal of Biological Dynamics, Taylor & Francis Open, 2010, 4 (1), pp.59-70. ⟨10.1080/17513750902777642⟩. ⟨hal-00542669⟩
  • Fabien Crauste, Ivan Demin, Olivier Gandrillon, Vitaly Volpert. Mathematical study of feedback control roles and relevance in stress erythropoiesis. Journal of Theoretical Biology, Elsevier, 2010, 263 (3), pp.303. ⟨10.1016/j.jtbi.2009.12.026⟩. ⟨hal-00567288⟩
  • Mostafa Adimy, Fabien Crauste, Hassan Hbid, Redouane Qesmi. Stability and Hopf bifurcation for a cell population model with state-dependent delay. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2010, 70 (5), pp.1611-1633. ⟨10.1137/080742713⟩. ⟨hal-00542655⟩
  • Mostafa Adimy, Fabien Crauste, Catherine Marquet. Asymptotic behavior and stability switch for a mature-immature model of cell differentiation. Nonlinear Analysis: Real World Applications, Elsevier, 2010, 11 (4), pp.2913-2929. ⟨10.1016/j.nonrwa.2009.11.001⟩. ⟨hal-00542644⟩
  • Fabien Crauste, Mostafa Adimy. Mathematical model of hematopoiesis dynamics with growth factor-dependent apoptosis and proliferation regulation. Mathematical and Computer Modelling, Elsevier, 2009, 49, pp.2128-2137. ⟨10.1016/j.mcm.2008.07.014⟩. ⟨hal-00542665⟩
  • Fabien Crauste. Delay Model of Hematopoietic Stem Cell Dynamics: Asymptotic Stability and Stability Switch. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2009, 4 (2), pp.28-47. ⟨10.1051/mmnp/20094202⟩. ⟨hal-00542663⟩
  • Nikolai Bessonov, Fabien Crauste, Ivan Demin, Vitaly Volpert. Dynamics of erythroid progenitors and erythroleukemia. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2009, Cancer modelling (Part 2), 4 (3), pp.210-232. ⟨10.1051/mmnp/20094309⟩. ⟨hal-00542660⟩
  • Mostafa Adimy, Samuel Bernard, Jean Clairambault, Fabien Crauste, Stéphane Génieys, et al.. Modélisation de la dynamique de l'hématopoïèse normale et pathologique. Hématologie, John Libbey Eurotext, 2008, 14 (5), pp.339-350. ⟨10.1684/hma.2008.0282⟩. ⟨hal-00750278⟩
  • Mostafa Adimy, Fabien Crauste, Abderrahim El Abdllaoui. Discrete maturity-structured model of cell differentiation with applications to acute myelogenous leukemia. Journal of Biological Systems, World Scientific Publishing, 2008, 16 (3), pp.395-424. ⟨10.1142/S0218339008002599⟩. ⟨hal-00750276⟩
  • Mostafa Adimy, Oscar Angulo, Fabien Crauste, Juan Carlos Lopez-Marcos. Numerical integration of a mathematical model of hematopoietic stem cell dynamics. Computers & Mathematics with Applications, Elsevier, 2008, 56, pp.594-606. ⟨10.1016/j.camwa.2008.01.003⟩. ⟨hal-00750283⟩
  • Fabien Crauste, M Lhassan Hbid, Abdelaziz Kacha. A delay reaction-diffusion model of the dynamics of botulinum in fish.. Mathematical Biosciences, Elsevier, 2008, 216 (1), pp.17-29. ⟨10.1016/j.mbs.2008.07.012⟩. ⟨hal-00542466⟩
  • Fabien Crauste, Laurent Pujo-Menjouet, Stéphane Génieys, Clément Molina, Olivier Gandrillon. Adding self-renewal in committed erythroid progenitors improves the biological relevance of a mathematical model of erythropoiesis.. Journal of Theoretical Biology, Elsevier, 2008, 250, pp.322-338. ⟨10.1016/j.jtbi.2007.09.041⟩. ⟨hal-00194422⟩
  • Mostafa Adimy, Fabien Crauste. Modelling and Asymptotic Stability of a Growth Factor-Dependent Stem Cells Dynamics Model with Distributed Delay. Discrete and Continuous Dynamical Systems - Series B, American Institute of Mathematical Sciences, 2007, 8 (1), pp.19-38. ⟨10.3934/dcdsb.2007.8.19⟩. ⟨hal-00258392⟩
  • Mostafa Adimy, Fabien Crauste, Abderrahim El Abdllaoui. Asymptotic Behavior of a Discrete Maturity Structured System of Hematopoietic Stem Cells Dynamics with Several Delays. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2006, 1 (2), pp.1-22. ⟨10.1051/mmnp:2008001⟩. ⟨hal-00750285⟩
  • Mostafa Adimy, Fabien Crauste, Andrei Halanay, Mihaela Neamtu, Dumitru Opris. Stability of limit cycles in a pluripotent stem cell dynamics model. Chaos, Solitons & Fractals, Elsevier, 2006, 27 (4), pp.1091-1107. ⟨10.1016/j.chaos.2005.04.083⟩. ⟨hal-00376002⟩
  • Mostafa Adimy, Fabien Crauste, Shigui Ruan. Periodic Oscillations in Leukopoiesis Models with Two Delays. Journal of Theoretical Biology, Elsevier, 2006, 242, pp.288-299. ⟨10.1016/j.jtbi.2006.02.020⟩. ⟨hal-00258393⟩
  • Fabien Crauste. Global Asymptotic Stability and Hopf Bifurcation for a Blood Cell Production Model. Mathematical Biosciences and Engineering, AIMS Press, 2006, 3 (2), pp.325-346. ⟨hal-00376070v2⟩
  • Mostafa Adimy, Fabien Crauste, Shigui Ruan. Modelling hematopoiesis mediated by growth factors with applications to periodic hematological diseases. Bulletin of Mathematical Biology, Springer Verlag, 2006, 68 (8), pp.2321-2351. ⟨10.1007/s11538-006-9121-9⟩. ⟨hal-00376087⟩
  • Mostafa Adimy, Fabien Crauste, Shigui Ruan. A mathematical study of the hematopoiesis process with applications to chronic myelogenous leukemia. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2005, 65 (4), pp.1328-1352. ⟨10.1137/040604698⟩. ⟨hal-00375977⟩
  • Mostafa Adimy, Fabien Crauste, Shigui Ruan. Stability and Hopf bifurcation in a mathematical model of pluripotent stem cell dynamics. Nonlinear Analysis: Real World Applications, Elsevier, 2005, 6 (4), pp.651-670. ⟨10.1016/j.nonrwa.2004.12.010⟩. ⟨hal-00375966⟩
  • Mostafa Adimy, Fabien Crauste. Existence, positivity and stability for a nonlinear model of cellular proliferation. Nonlinear Analysis: Real World Applications, Elsevier, 2005, 6 (2), pp.337-366. ⟨10.1016/j.nonrwa.2004.09.001⟩. ⟨hal-00375934⟩
  • Mostafa Adimy, Fabien Crauste, Laurent Pujo-Menjouet. On the stability of a maturity structured model of cellular proliferation. Discrete and Continuous Dynamical Systems - Series A, American Institute of Mathematical Sciences, 2005, 12 (3), pp.501-522. ⟨10.3934/dcds.2005.12.501⟩. ⟨hal-00375940⟩
  • Mostafa Adimy, Fabien Crauste. Global stability of a partial differential equation with distributed delay due to cellular replication. Nonlinear Analysis: Theory, Methods and Applications, Elsevier, 2003, 54 (8), pp.1469-1491. ⟨10.1016/S0362-546X(03)00197-4⟩. ⟨hal-00375926⟩
  • Mostafa Adimy, Fabien Crauste. Un modèle non-linéaire de prolifération cellulaire : extinction des cellules et invariance. Comptes Rendus. Mathématique, Académie des sciences (Paris), 2003, 336 (7), pp.559-564. ⟨10.1016/S1631-073X(03)00125-0⟩. ⟨hal-00375916⟩

Book sections2 documents

Theses1 document

  • Fabien Crauste. Etude mathématique d'équations aux dérivées partielles hyperboliques modélisant les processus de régulation des cellules sanguines - Applications aux maladies hématologiques cycliques. Mathématiques [math]. Université de Pau et des Pays de l'Adour, 2005. Français. ⟨tel-00009632⟩

Habilitation à diriger des recherches1 document

  • Fabien Crauste. Equations à Retard et Modèles de Dynamiques de Populations Cellulaires. Mathématiques générales [math.GM]. Université Claude Bernard Lyon 1, 2014. ⟨tel-01092352⟩