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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.

Jean-Marc Aury , Olivier Jaillon , L. Duret , Benjamin Noel , Claire Jubin , et al.
Nature, 2006, 444 (7116), pp.171-8. ⟨10.1038/nature05230⟩
Article dans une revue hal-00132091v1
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Universal trends of post-duplication evolution revealed by the genomes of 13 Paramecium species sharing an ancestral whole-genome duplication

Jean-Francois Gout , Parul Johri , Olivier Arnaiz , Thomas Doak , Simran Bhullar , et al.
2021
Pré-publication, Document de travail hal-02990778v1

Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia

Jean-Marc Aury , Olivier Jaillon , * Laurent Duret , Benjamin Noel , Claire Jubin , et al.
Nature, 2006, 444 (7116), pp.171-178. ⟨10.1038/nature05230⟩
Article dans une revue hal-00090904v1
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Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling

Khaled Bouhouche , Jean Gout , Aurélie Kapusta , Mireille Bétermier , Eric Meyer
Nucleic Acids Research, 2011, 39 (10), pp.4249 - 4264. ⟨10.1093/nar/gkq1283⟩
Article dans une revue hal-02647264v1

Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia.

S. Duharcourt , A Butler , E. Meyer
Genes and Development, 1995, 9 (16), pp.2065-2077. ⟨10.1101/gad.9.16.2065⟩
Article dans une revue hal-02147046v1

Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia.

G. Lepère , M. Nowacki , Serrano V Gout Jf , G. Duharcourt S , E. Meyer
Nucleic Acids Research, 2009, 37, pp.903-915
Article dans une revue hal-00405847v1
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Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.

Olivier Arnaiz , Jean-François Goût , Mireille Bétermier , Khaled Bouhouche , Jean Cohen , et al.
BMC Genomics, 2010, 11 (1), pp.547. ⟨10.1186/1471-2164-11-547⟩
Article dans une revue inserm-00617225v1

Developmentally programmed DNA splicing in Paramecium reveals short-distance crosstalk between DNA cleavage sites

A. Gratias , G. Lepère , O. Garnier , S. Rosa , S. Duharcourt , et al.
Nucleic Acids Research, 2008, 36, pp.3244-3251
Article dans une revue hal-00333039v1

Loss of a Fragile Chromosome Region leads to the Screwy Phenotype in Paramecium tetraurelia

Irina Nekrasova , Vera Nikitashina , Simran Bhullar , Olivier Arnaiz , Deepankar P. Singh , et al.
Genes, 2019, 10 (7), ⟨10.3390/genes10070513⟩
Article dans une revue hal-02183793v1

Epigenetics of ciliates

E. Meyer , Chalker Dl
Allis CD et al. Epigenetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York., pp.127-150, 2007
Chapitre d'ouvrage hal-00091641v1

Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia

G. Lepère , M. Nowacki , V. Serrano , Gout Jf , S. Duharcourt , et al.
Genes and Development, 2008, 22, pp.1501-1512
Article dans une revue hal-00333042v1
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Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining.

Aurélie Kapusta , Atsushi Matsuda , Antoine Marmignon , Michael Ku , Aude Silve , et al.
PLoS Genetics, 2011, 7 (4), pp.e1002049. ⟨10.1371/journal.pgen.1002049⟩
Article dans une revue inserm-00715296v1

Epigenetic Regulation of Programmed Genomic Rearrangements in Paramecium aurelia

Eric Meyer , S. Duharcourt
Journal of Eukaryotic Microbiology, 1996, 43 (6), pp.453-461. ⟨10.1111/j.1550-7408.1996.tb04504.x⟩
Article dans une revue istex hal-02147057v1

Silencing-associated and meiosis-specific small RNA pathways in TextitParamecium tetraurelia

G. Lepère , M. Nowacki , S. Serrano , J.-F. Gout , G. Guglielmi , et al.
Nucleic Acids Research, 2009, 37(3), pp.903-915
Article dans une revue hal-00428345v1

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline

L. Duret , J. Cohen , C. Jubin , P. Dessen , J.-F. Gout , et al.
Genome Research, 2008, 18, pp.585-596. ⟨10.1101/gr.074534.107⟩
Article dans une revue hal-00428190v1

The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.

Olivier Arnaiz , Nathalie Mathy , Céline Baudry , Sophie Malinsky , Jean-Marc Aury , et al.
PLoS Genetics, 2012, 8 (10), pp.e1002984. ⟨10.1371/journal.pgen.1002984⟩
Article dans une revue hal-00759182v1
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Relationship between genome and epigenome - challenges and requirements for future research

Geneviève Almouzni , Lucia Altucci , Bruno Amati , Neil Ashley , David Baulcombe , et al.
BMC Genomics, 2014, 15 (1), pp.487. ⟨10.1186/1471-2164-15-487⟩
Article dans une revue hal-02365238v1
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Primary and secondary siRNA synthesis triggered by RNAs from food bacteria in the ciliate Paramecium tetraurelia

Quentin Carradec , U. Gotz , O. Arnaiz , J. Pouch , M. Simon , et al.
Nucleic Acids Research, 2015, 43 (3), pp.1818-1833. ⟨10.1093/nar/gku1331⟩
Article dans une revue hal-01279181v1

Paramecium tetraurelia: The Renaissance of an Early Unicellular Model

J. Beisson , M. Bétermier , M.-H. Bré , J. Cohen , S. Duharcourt , et al.
Emerging Model Organisms, 2010, 2010(1), pp.1-55
Article dans une revue hal-00539398v1

Paramecium tetraurelia: The Renaissance of an Early Unicellular Model

J. Beisson , M. Bétermier , M-H. Bré , J. Cohen , S. Duharcourt , et al.
Emerging Model Organisms, 2010, 2010, pp.1-55
Article dans une revue hal-02305011v1
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Translational control of intron splicing in eukaryotes

Olivier Jaillon , Khaled Bouhouche , Jean-François Gout , Jean-Marc Aury , Benjamin Noel , et al.
Nature, 2008, 451 (7176), pp.359-362. ⟨10.1038/nature06495⟩
Article dans une revue cea-00945555v1

Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements

Frédéric Guérin , Olivier Arnaiz , Nicole Boggetto , Cyril Denby Wilkes , Eric Meyer , et al.
BMC Genomics, 2017, 18 (1), ⟨10.1186/s12864-017-3713-7⟩
Article dans une revue hal-02146952v1

A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium

Simran Bhullar , Cyril Denby Wilkes , Olivier Arnaiz , Mariusz Nowacki , Linda Sperling , et al.
Nucleic Acids Research, 2018, 46 (18), pp.9550--9562. ⟨10.1093/nar/gky772⟩
Article dans une revue hal-02176489v1

Sequence-specific epigenetic effects of the maternal somatic genome on developmental rearrangements of the zygotic genome in Paramecium primaurelia.

E. Meyer , A Butler , K Dubrana , S. Duharcourt , F. Caron
Molecular and Cellular Biology, 1997, 17 (7), pp.3589-3599. ⟨10.1128/mcb.17.7.3589⟩
Article dans une revue hal-02147010v1

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

Baptiste Saudemont , Alexandra Popa , Joanna Parmley , Vincent Rocher , Corinne Blugeon , et al.
Genome Biology, 2017, 18 (1), ⟨10.1186/s13059-017-1344-6⟩
Article dans une revue hal-02321589v1

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

L. Duret , Jean Cohen , Claire Jubin , Philippe Dessen , Jean-François Goût , et al.
Genome Research, 2008, 18 (4), pp.585-96. ⟨10.1101/gr.074534.107⟩
Article dans une revue hal-00282468v1

Homology-Dependent Maternal Inhibition of Developmental Excision of Internal Eliminated Sequences in Paramecium tetraurelia

Sandra Duharcourt , Anne-Marie Keller , Eric Meyer
Molecular and Cellular Biology, 1998, 18 (12), pp.7075-7085. ⟨10.1128/MCB.18.12.7075⟩
Article dans une revue hal-02147008v1

Paramecium genome survey: a pilot project.

P. Dessen , M. Zagulski , R. Gromadka , H. Plattner , R. Kissmehl , et al.
Trends in Genetics, 2001, 17 (6), pp.306-308
Article dans une revue hal-02674863v1

Genome-defence small RNAs exapted for epigenetic mating-type inheritance.

Deepankar Pratap Singh , Baptiste Saudemont , Gérard Guglielmi , Olivier Arnaiz , Jean-François Goût , et al.
Nature, 2014, 509 (7501), pp.447-52. ⟨10.1038/nature13318⟩
Article dans une revue hal-01015302v1

ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology

Olivier Arnaiz , Eric Meyer , Linda Sperling
Nucleic Acids Research, 2019, ⟨10.1093/nar/gkz948⟩
Article dans une revue hal-02379386v1