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Towards a more accurate metabarcoding approach for studying fungal communities of fermented foods
Olivier Rué
,
Monika Coton
,
Eric Dugat-Bony
,
Kate Howell
,
Françoise Irlinger
Article dans une revue
hal-04234976v1
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Comparison of metabarcoding taxonomic markers to describe fungal communities in fermented foods
Olivier Rué
,
Monika Coton
,
Eric Dugat-Bony
,
Kate Howell
,
Françoise Irlinger
Article dans une revue
hal-04237955v2
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Genetic and technological diversity of Streptococcus thermophilus isolated from the Saint-Nectaire PDO cheese-producing area.
Anna Grizon
,
Sébastien Theil
,
Cécile Callon
,
Pauline Gerber
,
Sandra Helinck
Article dans une revue
hal-04271384v1
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Protein Sources Alternative to Meat: State of the Art and Involvement of Fermentation
Mariagrazia Molfetta
,
Etiele Morais
,
Luisa Barreira
,
Giovanni Luigi Bruno
,
Francesco Porcelli
Article dans une revue
hal-03721991v1
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Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach
Annick Raymond-Fleury
,
Marie-Hélène Lessard
,
Julien Chamberland
,
Yves Pouliot
,
Eric Dugat-Bony
Article dans une revue
hal-03721977v1
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Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory
Thomas Paillet
,
Julien Lossouarn
,
Clarisse Figueroa
,
Cédric Midoux
,
Olivier Rué
Article dans une revue
hal-03738602v1
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The microbial community associated with pea seeds (Pisum sativum) of different geographical origins
Valentine Chartrel
,
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Sophie Huchette
,
Pascal Bonnarme
Article dans une revue
hal-03359046v1
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Bacteriophage ecology of fermented foods: anything new under the sun?
Thomas Paillet
,
Eric Dugat-Bony
Article dans une revue
hal-03298690v1
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Analysis of bacterial and archaeal communities associated with Fogo volcanic soils of different ages
Corinne Biderre-Petit
,
Corentin Hochart
,
Hélène Gardon
,
Eric Dugat-Bony
,
Sébastien Terrat
Article dans une revue
hal-02996360v1
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Phenotypic and Genetic Characterization of the Cheese Ripening Yeast Geotrichum candidum
Vincent Perkins
,
Stéphanie Vignola
,
Marie-Helene Lessard
,
Pier-Luc Plante
,
Jacques Corbeil
Article dans une revue
hal-02873333v1
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Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles
Eric Dugat-Bony
,
Julien Lossouarn
,
Marianne de Paepe
,
Anne-Sophie Sarthou
,
Yasmina Fedala
Article dans une revue
hal-02623156v1
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Influence of feed temperature to biofouling of ultrafiltration membrane during skim milk processing
Julien Chamberland
,
Thomas Messier
,
Eric Dugat-Bony
,
Marie-Helene Lessard
,
Steve Labrie
Article dans une revue
hal-02629063v1
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Design of microbial consortia for the fermentation of pea-protein-enriched emulsions
Salma Ben-Harb
,
Anne Saint-Eve
,
Maud Panouillé
,
Isabelle Souchon
,
Pascal Bonnarme
Article dans une revue
hal-04413334v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding
Hélène Falentin
,
Lucas Auer
,
Mahendra Mariadassou
,
Géraldine Pascal
,
Olivier Rué
Cahier des Techniques de l'INRA, 2019, 2019 (97), pp.1-23
Article dans une revue
hal-02311421v1
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Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses
Eric Dugat-Bony
,
Pascal Bonnarme
,
Sébastien Fraud
,
Jessie Catellote
,
Anne-Sophie Sarthou
Article dans une revue
hal-02349939v1
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Effect of dairy matrices on the survival of Streptococcus thermophilus, Brevibacterium aurantiacum and Hafnia alvei during digestion
Leticia Hernandez Galan
,
Thomas Cattenoz
,
Steven Le Feunteun
,
Alexis Canette
,
Romain Briandet
Article dans une revue
hal-01607632v1
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Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat
Nguyen Phuong Pham
,
Séverine Layec
,
Eric Dugat-Bony
,
Marie Vidal
,
Francoise Irlinger
Article dans une revue
hal-02628710v1
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Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine
Rahat Zaheer
,
Eric Dugat-Bony
,
Devon Holman
,
Elodie Cousteix
,
Yong Xu
Article dans une revue
hal-01465156v1
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Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk
Julie Meneghel
,
Eric Dugat-Bony
,
Françoise Irlinger
,
Valentin Loux
,
Marie Vidal
Article dans une revue
hal-03649172v1
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The effect of reduced sodium chloride content on the microbiological and biochemical properties of a soft surface-ripened cheese
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Marie-Claire Perello
,
Gilles de Revel
,
Pascal Bonnarme
Article dans une revue
hal-01532552v1
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Investigation of the activity of the microorganisms in a reblochon-style cheese by metatranscriptomic analysis
Christophe C. Monnet
,
Eric Dugat-Bony
,
Dominique Swennen
,
Jean-Marie Beckerich
,
Francoise F. Irlinger
Article dans une revue
hal-02633875v1
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Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk
Julie Meneghel
,
Eric Dugat-Bony
,
Françoise Irlinger
,
Valentin Loux
,
Marie Vidal
Article dans une revue
hal-01511494v1
|
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Highlighting the microbial diversity of 12 French cheese varieties
Eric Dugat-Bony
,
Lucille Garnier
,
Jeremie Denonfoux
,
Stéphanie Ferreira
,
Anne-Sophie Sarthou
Article dans une revue
hal-01389685v1
|
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Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes
Corinne Biderre-Petit
,
Eric Dugat-Bony
,
Mickaël Mege
,
Nicolas Parisot
,
Lorenz Adrian
Article dans une revue
hal-01599389v2
|
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Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Valentin Loux
,
Marie Vidal
,
Pascal Bonnarme
Article dans une revue
hal-03649175v1
|
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Draft genome sequence of Corynebacterium variabile Mu292, isolated from Munster, a french smear-ripened cheese
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Valentin Loux
,
Marie Vidal
,
Pascal Bonnarme
Article dans une revue
hal-01480898v1
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Overview of a surface-ripened cheese community functioning by meta-omics analyses
Eric Dugat-Bony
,
Cecile Straub
,
Aurélie Teissandier
,
Djamila Onesime
,
Valentin Loux
Article dans une revue
hal-01195505v1
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Cheese rind microbial communities: diversity, composition and origin
Francoise Irlinger
,
Séverine Layec
,
Sandra Hélinck
,
Eric Dugat-Bony
Article dans une revue
hal-01535274v1
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Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities
Yong Xu
,
Eric Dugat-Bony
,
Rahat Zaheer
,
Lorna Selinger
,
Ruth Barbieri
Article dans une revue
hal-01195479v1
|
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Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments
Frédéric Plewniak
,
Sandrine Koechler
,
Benjamin Navet
,
Eric Dugat-Bony
,
Olivier Bouchez
Article dans une revue
hal-01026453v1
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Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration
Jérémie Denonfoux
,
Nicolas Parisot
,
Eric Dugat-Bony
,
Corinne Petit
,
Delphine Boucher
Article dans une revue
hal-00783545v1
|
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Detecting unknown sequences with DNA microarrays: explorative probe design strategies.
Eric Dugat-Bony
,
Eric Peyretaillade
,
Nicolas Parisot
,
Corinne Biderre-Petit
,
Faouzi Jaziri
Article dans une revue
hal-00822134v1
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In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes
Eric Dugat-Bony
,
Corinne Biderre-Petit
,
Faouzi Jaziri
,
Maude M. David
,
Jérémie Denonfoux
Article dans une revue
hal-00747255v1
|
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KASpOD a web service for highly specific and explorative oligonucleotide design
Nicolas Parisot
,
Jérémie Denonfoux
,
Eric Dugat-Bony
,
Pierre Peyret
,
Eric Peyretaillade
Article dans une revue
hal-02651992v1
|
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Annotation of microsporidian genomes using transcriptional signals.
Eric Peyretaillade
,
Nicolas Parisot
,
Valérie Polonais
,
Sébastien Terrat
,
Jérémie Denonfoux
Article dans une revue
hal-00813939v1
|
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Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria
Sandrine Demanèche
,
Jean-Michel Monier
,
Eric Dugat-Bony
,
Pascal Simonet
Article dans une revue
hal-00630134v1
|
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Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake.
Corinne Biderre-Petit
,
Didier Jézéquel
,
Eric Dugat-Bony
,
Filipa Lopes
,
Jan Kuever
Article dans une revue
hal-00842871v1
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HiSpOD: probe design for functional DNA microarrays.
Eric Dugat-Bony
,
Mohieddine Missaoui
,
Eric Peyretaillade
,
Corinne Biderre-Petit
,
Ourdia Bouzid
Article dans une revue
hal-00842882v1
|
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Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.
Sébastien Terrat
,
Eric Peyretaillade
,
Olivier Gonçalves
,
Eric Dugat-Bony
,
Fabrice Gravelat
Article dans une revue
hal-00529644v1
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Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Eric Peyretaillade
,
Olivier Gonçalves
,
Sébastien Terrat
,
Eric Dugat-Bony
,
Patrick Wincker
Article dans une revue
hal-01888038v1
|
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Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Eric Peyretaillade
,
Olivier Gonçalves
,
Sébastien Terrat
,
Eric Dugat-Bony
,
Patrick Wincker
Article dans une revue
hal-00461524v1
|