|
|
A Pluralistic Account of Homology: Adapting the Models to the Data
Leanne S. Haggerty
,
Pierre-Alain Jachiet
,
William P. Hanage
,
David A. Fitzpatrick
,
Philippe Lopez
,
et al.
Article dans une revue
hal-01544794v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?
Emmanuel J.P. Douzery
,
Elizabeth A Snell
,
Eric Bapteste
,
Frédéric Delsuc
,
Hervé Philippe
Proceedings of the National Academy of Sciences of the United States of America, 2004, 101 (43), pp.15386-91. ⟨10.1073/pnas.0403984101⟩
Article dans une revue
halsde-00193035v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Modeling the evolution of interconnected processes: It is the song and the singers: Tracking units of selection with interaction networks
Eric Bapteste
,
François Papale
Article dans une revue
hal-03015842v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
RRNPP_detector: a tool to detect RRNPP quorum sensing systems in chromosomes, plasmids and phages of gram-positive bacteria
Charles Bernard
,
Yanyan Li
,
Eric Bapteste
,
Philippe Lopez
2021
Pré-publication, Document de travail
hal-03384406v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm
Eva Boon
,
Sébastien Halary
,
Eric Bapteste
,
Mohamed Hijri
Article dans une revue
hal-01224215v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
Eduardo Corel
,
Philippe Lopez
,
Raphaël Méheust
,
Eric Bapteste
Article dans une revue
hal-01300043v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Highly divergent ancient gene families in metagenomic samples are compatible with additional divisions of life
Philippe Lopez
,
Sébastien Halary
,
Eric Bapteste
Article dans une revue
hal-01257771v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
EGN: a wizard for construction of gene and genome similarity networks
Sebastien Halary
,
James O. Mcinerney
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-01544799v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes
Jonathan Filée
,
Henry Krisch
,
E. Bapteste
,
E. Susko
Mol. Biol. Evol., 2006, 23, pp.1688-1696
Article dans une revue
hal-00119283v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Higher-level classification of the Archaea: on methanogenesis and methanogens
E. Bapteste
,
Céline Brochier - Armanet
,
Y. Boucher
Archaea, 2005, 1, pp.353--63
Article dans une revue
hal-02372549v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Sequence Comparative Analysis Using Networks: Software for Evaluating De Novo Transcript Assembly from Next-Generation Sequencing
Ian Misner
,
Cedric Bicep
,
Philippe Lopez
,
Sebastien Halary
,
Eric Bapteste
,
et al.
Article dans une revue
hal-01544800v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Philosophy and Evolution: Minding the Gap Between Evolutionary Patterns and Tree-Like Patterns
Eric Bapteste
,
Frederic Bouchard
,
Richard M. Burian
Anisimova, M. EVOLUTIONARY GENOMICS: STATISTICAL AND COMPUTATIONAL METHODS, VOL 2, 856 (2), HUMANA PRESS INC, pp.81-110, 2012, Methods in Molecular Biology, 978-1-61779-584-8. ⟨10.1007/978-1-61779-585-5_4⟩
Chapitre d'ouvrage
hal-01544801v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
. Integron-associated gene cassettes inHalifax Harbour: assessment of a mobile gene pool in marine sediments.
J. Koenig
,
Yann G. Boucher
,
R. Charlebois
,
C. Nesbo
,
O. Zhaxybayeva
,
et al.
Environmental Microbiology, 2008, 10(4), pp.1024-1038
Article dans une revue
hal-00418743v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny.
Eric Bapteste
,
E. Susko
,
Jessica Leigh
,
E. Ruiz-Trillo
,
J. Buckman
,
et al.
Molecular Biology and Evolution, 2008, 25 (1), pp.83-91
Article dans une revue
hal-00417274v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
The Distribution of Genes Associated With Regulated Cell Death Is Decoupled From the Mitochondrial Phenotypes Within Unicellular Eukaryotic Hosts
Jérôme Teulière
,
Guillaume Bernard
,
Eric Bapteste
Article dans une revue
hal-02947759v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Horizontal gene transfer and the evolution of cnidarian stinging cells.
Elsa Denker
,
Eric Bapteste
,
Hervé Le Guyader
,
Michaël Manuel
,
Nicolas Rabet
Current Biology - CB, 2008, 18 (18), pp.858-859
Article dans une revue
hal-00594717v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Interspecific interactions that affect ageing: age-distorters manipulate host ageing to their own evolutionary benefits
Jérôme Teulière
,
Charles Bernard
,
Eric Bapteste
Article dans une revue
hal-03250121v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Hundreds of Out-of-Frame Remodeled Gene Families in the Escherichia coli Pangenome
Andrew Watson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03820636v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Introducing Trait Networks to Elucidate the Fluidity of Organismal Evolution Using Palaeontological Data
Etienne Lord
,
Jananan S Pathmanathan
,
Eduardo L Corel
,
Vladimir Makarenkov
,
Philippe Lopez
,
et al.
Article dans une revue
hal-02324769v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
The two tempos of nuclear pore complex evolution: highly adapting proteins in an ancient frozen structure
E. Bapteste
,
R. L. Charlebois
,
D. Macleod
,
Céline Brochier - Armanet
Genome Biology, 2005, 6
Article dans une revue
hal-02372548v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
The Methodology Behind Network Thinking: Graphs to Analyze Microbial Complexity and Evolution
Andrew B. Watson
,
Romain Lannes
,
Jananan S Pathmanathan
,
Raphaël Méheust
,
Slim Karkar
,
et al.
Chapitre d'ouvrage
hal-02324786v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Interactomics: dozens of viruses, co-evolving with humans, including the influenza A virus, may actively distort human ageing
Jérôme Teulière
,
Charles Bernard
,
Hugo Bonnefous
,
Johannes Martens
,
Philippe Lopez
,
et al.
Article dans une revue
hal-03952038v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Evolution of genetic diversity using networks: the human gut microbiome as a case study
E. Bapteste
,
C. Bicep
,
P. Lopez
Article dans une revue
hal-01544804v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Hundreds of out-of-frame remodelled gene families in the E. coli pangenome
Andrew K Watson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03451955v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Retracing lineage history: time to emphasize genetic turn-over Authorship
Andrew K Watson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03341509v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Large-scale identification of viral quorum sensing systems reveals density-dependent sporulation-hijacking mechanisms in bacteriophages
Charles Bernard
,
Yanyan Li
,
Philippe Lopez
,
Eric Bapteste
2021
Pré-publication, Document de travail
hal-03384404v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Phylosystemics: Merging Phylogenomics, Systems Biology, and Ecology to Study Evolution
a K Watson
,
M Habib
,
E Bapteste
Article dans une revue
hal-03028125v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Marine Ultrasmall Prokaryotes Likely Affect the Cycling of Carbon, Methane, Nitrogen, and Sulfur
Romain Lannes
,
Louise Cavaud
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03380389v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms
Dominik Forster
,
Lucie Bittner
,
Slim Karkar
,
Micah Dunthorn
,
Sarah Romac
,
et al.
Article dans une revue
hal-01144173v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
“The Narrative Challenges of Microbiology: scale, actants and imagery in two scientific fables”
Liliane Campos
,
Eric Bapteste
“Narrative, Cognition & Science” Symposium, Erlangen-Nürnberg University, Oct 2016, Erlangen, Germany
Communication dans un congrès
hal-01434744v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|