Number of documents

34

Emmanuel Soubies


Journal articles10 documents

  • Emmanuel Soubies, Ferréol Soulez, Michael T. Mccann, Thanh-An Pham, Laurène Donati, et al.. Pocket Guide to Solve Inverse Problems with GlobalBioIm. Inverse Problems, IOP Publishing, 2019, 35 (10), pp.104006. ⟨10.1088/1361-6420/ab2ae9⟩. ⟨hal-02162546⟩
  • Quentin Denoyelle, Vincent Duval, Gabriel Peyré, Emmanuel Soubies. The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy. Inverse Problems, IOP Publishing, In press, ⟨10.1088/1361-6420/ab2a29⟩. ⟨hal-01921604⟩
  • Emmanuel Soubies, Agata Radwanska, Dominique Grall, Laure Blanc-Féraud, Ellen van Obberghen-Schilling, et al.. Nanometric axial resolution of fibronectin assembly units achieved with an efficient reconstruction approach for multi-angle-TIRF microscopy. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-018-36119-3⟩. ⟨hal-02017844⟩
  • Emmanuel Soubies, Michael Unser. Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy. IEEE Transactions on Computational Imaging, IEEE, 2019, 5 (2), pp.240-250. ⟨10.1109/TCI.2018.2887136⟩. ⟨hal-02428166⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. New Insights on the Optimality Conditions of the l2-l0 Minimization Problem. Journal of Mathematical Imaging and Vision, Springer Verlag, In press, ⟨10.1007/s10851-019-00917-9⟩. ⟨hal-02144528v2⟩
  • Thanh-An Pham, Emmanuel Soubies, Alexandre Goy, Joowon Lim, Ferréol Soulez, et al.. Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering. Optics Express, Optical Society of America, 2018, 26 (3), pp.2749-2763. ⟨insu-01690828⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. A Unified View of Exact Continuous Penalties for l2-l0 Minimization. SIAM Journal on Optimization, Society for Industrial and Applied Mathematics, 2017, 27 (3), ⟨10.1137/16M1059333⟩. ⟨hal-01267701v2⟩
  • Emmanuel Soubies, Thanh-An Pham, Michael Unser. Efficient inversion of multiple-scattering model for optical diffraction tomography. Optics Express, Optical Society of America, 2017, 25 (18), pp.21786. ⟨10.1364/OE.25.021786⟩. ⟨hal-02428165⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. ERRATUM: A Continuous Exact l0 penalty (CEL0) for least squares regularized problem. SIAM Journal on Imaging Sciences, Society for Industrial and Applied Mathematics, 2016, 9 (1), pp.490-494. ⟨10.1137/15M1038384⟩. ⟨hal-01267679⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. A Continuous Exact l0 penalty (CEL0) for least squares regularized problem. SIAM Journal on Imaging Sciences, Society for Industrial and Applied Mathematics, 2015, 8 (3), pp. 1607-1639 (33 p.). ⟨10.1137/151003714⟩. ⟨hal-01102492v2⟩

Conference papers22 documents

  • Laurène Donati, Emmanuel Soubies, Michael Unser. User-friendly Building of Reconstruction Algorithms with GlobalBioIm. Quantitative BioImaging Conference 2020, Jan 2020, Oxford, United Kingdom. ⟨hal-02433452⟩
  • Thanh-An Pham, Emmanuel Soubies, Michael Unser. Adaptive Regularization for Three-dimensional Optical Diffraction Tomography. Biomedical Imaging (ISBI), 2020 IEEE 16th International Symposium on, Apr 2020, Iowa City, United States. ⟨hal-02444659⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. On the Local Minimizers of the CEL0 Relaxation. SPARS 2019 - Signal Processing with Adaptive Sparse Structured Representations - Workshop, Jul 2019, Toulouse, France. ⟨hal-02263782⟩
  • Mona Zehni, Lauréne Donati, Emmanuel Soubies, Zhizhen Zhao, Minh Do, et al.. Joint density map and continuous angular refinement in cryo-electron microscopy. IS&T International Symposium on Electronic Imaging, Jan 2019, Burlingame, United States. pp.133-1-133-5, ⟨10.2352/ISSN.2470-1173.2019.13.COIMG-133⟩. ⟨hal-02428184⟩
  • Lauréne Donati, Emmanuel Soubies, Michael Unser. Inner-Loop Free ADMM for Cryo-EM. ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨hal-02048101⟩
  • Thanh-An Pham, Emmanuel Soubies, Daniel Sage, Michael Unser. Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy. ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨hal-02048083⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub, Ellen van Obberghen-Schilling. Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation. IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759103⟩. ⟨hal-02017862⟩
  • Thanh-An Pham, Emmanuel Soubies, Joowon Lim, Alexandre Goy, Ferréol Soulez, et al.. PHASELESS DIFFRACTION TOMOGRAPHY WITH REGULARIZED BEAM PROPAGATION. IEEE International Symposium on Biomedical Imaging (ISBI), 2018, Washington, United States. ⟨hal-01978525⟩
  • Michael Unser, Emmanuel Soubies, Ferréol Soulez, Michael Mccann, Laurène Donati. GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems. OSA Imaging and Applied Optics Congress on Computational Optical Sensing and Imaging (COSI'17), 2017, San Francisco, United States. ⟨insu-01632807⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. Quelles relaxations continues pour le critère $l2-l0$ ?. Colloque Gretsi, Sep 2017, Juan-Les-Pins, France. pp.4. ⟨hal-01560319⟩
  • Simon Gazagnes, Emmanuel Soubies, Laure Blanc-Féraud. High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation. ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.4, ⟨10.1109/ISBI.2017.7950460⟩. ⟨hal-01443565⟩
  • Laure Blanc-Féraud, Emmanuel Soubies, Gilles Aubert. Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties. Workshop ATLAS on mathematical and algorithmimcal approaches for high dimensional problems in data sciences. , GdR MaDICS, May 2016, Grenoble, France. ⟨hal-01358112⟩
  • Laure Blanc-Féraud, Emmanuel Soubies, Gilles Aubert. Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties. NCMIP 2016 - New Computational Methods for Inverse Problem , ENS Cachan, Apr 2016, Cachan, France. ⟨hal-01349670⟩
  • Emmanuel Soubies, Sébastien Schaub, Agata Radwanska, Ellen van Obberghen-Schilling, Laure Blanc-Féraud, et al.. A Framework for Multi-angle Tirf Microscope Calibration. ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2016.7493355⟩. ⟨hal-01257736⟩
  • Emmanuelle Poulain, Sylvain Prigent, Emmanuel Soubies, Xavier Descombes. Cells Detection Using Segmentation Competition. ISBI - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States. ⟨10.1109/ISBI.2015.7164090⟩. ⟨hal-01113167⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. CEL0: a continuous alternative to l0 penalty. Signal Processing with Adaptive Sparse Structured Representations (SPARS), Jul 2015, Cambridge, United Kingdom. ⟨hal-01167192⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Gilles Aubert. Seuillage CEL0 pour la minimisation l2- l0 : comparaisons avec IHT. Colloque Gretsi, Sep 2015, Lyon, France. pp.4. ⟨hal-01169557⟩
  • Adilson Chinatto, Emmanuel Soubies, Cynthia Junqueira, Joâo M. T. Romano, Pascal Larzabal, et al.. L0-Optimization for Channel and DOA Sparse Estimation. International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), Dec 2015, Cancun, Mexico. pp.305-308, ⟨10.1109/CAMSAP.2015.7383797⟩. ⟨hal-01212042⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub, Gilles Aubert. Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy. ICIP - International Conference on Image Processing, Oct 2014, Paris, France. pp.2844 - 2848, ⟨10.1109/ICIP.2014.7025575 ⟩. ⟨hal-01037895⟩
  • Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub, Gilles Aubert. A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy. ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩. ⟨hal-00914998⟩
  • Cachan Satie, Thi Huyen Trang Nguyen, Jean-Pierre Barbot, Adilson Chinatto, Emmanuel Soubies, et al.. Secret key management and dynamic security coding system. 2014 IEEE Fifth International Conference on Communications and Electronics (ICCE), Jul 2014, Danang, France. ⟨10.1109/CCE.2014.6916762⟩. ⟨hal-01797044⟩
  • Emmanuel Soubiès, Pierre Weiss, Xavier Descombes. A 3D segmentation algorithm for ellipsoidal shapes. Application to nuclei extraction.. ICPRAM - International Conference on Pattern Recognition Applications and Methods, Feb 2013, Barcelona, Spain. pp.97-105. ⟨hal-00733187⟩

Book sections1 document

  • Emmanuel Soubies, Pierre Weiss, Xavier Descombes. Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging. Pattern Recognition Applications and Methods., 318, Springer-Verlag, pp.153-170, 2015, Advances in Intelligent Systems and Computing, 978-3-319-12610-4. ⟨10.1007/978-3-319-12610-4_10⟩. ⟨hal-01088384⟩

Theses1 document

  • Emmanuel Soubies. Sur quelques problèmes de reconstruction en imagerie MA-TIRF et en optimisation parcimonieuse par relaxation continue exacte de critères pénalisés en norme-l0. Autre. Université Côte d'Azur, 2016. Français. ⟨NNT : 2016AZUR4082⟩. ⟨tel-01479054⟩