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Emmanuel Soubies

Chargé de Recherche CNRS à l'IRIT.
53
Documents
Identifiants chercheurs

Publications

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Automatic Tuning of Denoising Algorithms Parameters without Ground Truth

Arthur Floquet , Sayantan Dutta , Emmanuel Soubies , Duong-Hung Pham , Denis Kouamé
IEEE Signal Processing Letters, 2024, 31, pp.381 - 385. ⟨10.1109/LSP.2024.3354554⟩
Article dans une revue hal-04344047v1
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Sphere Refinement in Gap Safe Screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
IEEE Signal Processing Letters, 2023, ⟨10.1109/LSP.2023.3277792⟩
Article dans une revue hal-03891840v2
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The MLE is a reliable source: sharp performance guarantees for localization problems

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss
Inverse Problems, 2023, ⟨10.1088/1361-6420/ad0dbb⟩
Article dans une revue hal-03811028v2

Leveraging Joint-Diagonalization in Transform-Learning NMF

Sixin Zhang , Emmanuel Soubies , Cédric Févotte
IEEE Transactions on Signal Processing, 2022, ⟨10.1109/TSP.2022.3188177⟩
Article dans une revue hal-03481041v1
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Optical diffraction tomography from single-molecule localization microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
Optics Communications, 2021, 499, pp.127290. ⟨10.1016/j.optcom.2021.127290⟩
Article dans une revue hal-03290069v1
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Direction-of-Arrival Estimation through Exact Continuous l20-Norm Relaxation

Emmanuel Soubies , Adilson Chinatto , Pascal Larzabal , João M T Romano , Laure Blanc-Féraud
IEEE Signal Processing Letters, 2021, 28, pp.16-20. ⟨10.1109/LSP.2020.3042771⟩
Article dans une revue hal-03047201v1
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Expanding boundaries of Gap Safe screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
Journal of Machine Learning Research, 2021, 22 (236), pp.1-57
Article dans une revue hal-03147502v3

Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM

Mona Zehni , Laurène Donati , Emmanuel Soubies , Zhizhen J. Zhao , Michael Unser
IEEE Transactions on Image Processing, 2020, ⟨10.1109/TIP.2020.2984313⟩
Article dans une revue hal-02516898v1
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New Insights on the Optimality Conditions of the l2-l0 Minimization Problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Journal of Mathematical Imaging and Vision, 2020, Special Issue on Memory of Mila Nikolova, 62, pp.808-824. ⟨10.1007/s10851-019-00917-9⟩
Article dans une revue hal-02144528v2

Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Joowon Lim , Demetri Psaltis
IEEE Transactions on Computational Imaging, 2020, 6 (1), pp.727-738. ⟨10.1109/TCI.2020.2969070⟩
Article dans une revue hal-02457399v1
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On the Identifiability of Transform Learning for Non-negative Matrix Factorization

Sixin Zhang , Emmanuel Soubies , Cédric Févotte
IEEE Signal Processing Letters, 2020, 27, pp.1555 - 1559. ⟨10.1109/LSP.2020.3020431⟩
Article dans une revue hal-02542653v5

Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy

Emmanuel Soubies , Michael Unser
IEEE Transactions on Computational Imaging, 2019, 5 (2), pp.240-250. ⟨10.1109/TCI.2018.2887136⟩
Article dans une revue hal-02428166v1
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The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies
Inverse Problems, inPress, ⟨10.1088/1361-6420/ab2a29⟩
Article dans une revue hal-01921604v1
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Pocket Guide to Solve Inverse Problems with GlobalBioIm

Emmanuel Soubies , Ferréol Soulez , Michael T. Mccann , Thanh-An Pham , Laurène Donati
Inverse Problems, 2019, 35 (10), pp.104006. ⟨10.1088/1361-6420/ab2ae9⟩
Article dans une revue hal-02162546v1

Nanometric axial resolution of fibronectin assembly units achieved with an efficient reconstruction approach for multi-angle-TIRF microscopy

Emmanuel Soubies , Agata Radwanska , Dominique Grall , Laure Blanc-Féraud , Ellen van Obberghen-Schilling
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-36119-3⟩
Article dans une revue hal-02017844v1
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Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering

Thanh-An Pham , Emmanuel Soubies , Alexandre Goy , Joowon Lim , Ferréol Soulez
Optics Express, 2018, 26 (3), pp.2749-2763. ⟨10.1364/OE.26.002749⟩
Article dans une revue insu-01690828v1

Efficient inversion of multiple-scattering model for optical diffraction tomography

Emmanuel Soubies , Thanh-An Pham , Michael Unser
Optics Express, 2017, 25 (18), pp.21786. ⟨10.1364/OE.25.021786⟩
Article dans une revue hal-02428165v1
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A Unified View of Exact Continuous Penalties for l2-l0 Minimization

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Optimization, 2017, 27 (3), ⟨10.1137/16M1059333⟩
Article dans une revue hal-01267701v2
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ERRATUM: A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Imaging Sciences, 2016, 9 (1), pp.490-494. ⟨10.1137/15M1038384⟩
Article dans une revue hal-01267679v1
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A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Imaging Sciences, 2015, 8 (3), pp. 1607-1639 (33 p.). ⟨10.1137/151003714⟩
Article dans une revue hal-01102492v2
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Optical Diffraction Tomography Meets Fluorescence Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
1st International Symposium on Computational Sensing (ISCS 2023), Jun 2023, Luxembourg, Luxembourg
Communication dans un congrès hal-04132428v1
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Deep Unrolling for Nonconvex Robust Principal Component Analysis

Elizabeth Z. C. Tan , Caroline Chaux , Emmanuel Soubies , Vincent y F Tan
IEEE MLSP 2023, Sep 2023, Rome, France. ⟨10.1109/MLSP55844.2023.10285962⟩
Communication dans un congrès hal-04160961v1
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MAP-informed Unrolled Algorithms for Hyper-parameter Estimation

Pascal Nguyen , Emmanuel Soubies , Caroline Chaux
2023 IEEE International Conference on Image Processing (ICIP), Oct 2023, Kuala Lumpur, Malaysia. pp.2160-2164, ⟨10.1109/ICIP49359.2023.10222154⟩
Communication dans un congrès hal-04153083v1
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Algorithmes de visualisation de non-identifiabilité

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss
XXIXème Colloque Francophone de Traitement du Signal et des Images (GRETSI 2023), Groupe de Recherche et d'Etudes de Traitement du Signal et des Images, Aug 2023, Grenoble, France
Communication dans un congrès hal-04138308v2
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Safe screening for sparse regression with the Kullback-Leibler divergence

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Jun 2021, Toronto (virtual), Canada
Communication dans un congrès hal-03147345v2
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Dictionary Learning with Statistical Sparsity in the Presence of Noise

Shayan Aziznejad , Emmanuel Soubies , Michael Unser
28th European Signal Processing Conference - EUSIPCO 2020, Jan 2021, Amsterdam, Netherlands. pp.2026-2029
Communication dans un congrès hal-02966135v1
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DIFFRACTION TOMOGRAPHY FROM SINGLE-MOLECULE LOCALIZATION MICROSCOPY: NUMERICAL FEASIBILITY

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice (Virtual), France
Communication dans un congrès hal-03184774v1
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Adaptive Regularization for Three-dimensional Optical Diffraction Tomography

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Demetri Psaltis , Michael Unser
, 2020 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020.9098523⟩
Communication dans un congrès hal-02444659v2

User-friendly Building of Reconstruction Algorithms with GlobalBioIm

Laurène Donati , Emmanuel Soubies , Michael Unser
Quantitative BioImaging Conference 2020, Jan 2020, Oxford, United Kingdom
Communication dans un congrès hal-02433452v1
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On the Local Minimizers of the CEL0 Relaxation

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SPARS 2019 - Signal Processing with Adaptive Sparse Structured Representations - Workshop, Jul 2019, Toulouse, France
Communication dans un congrès hal-02263782v1
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Inner-Loop Free ADMM for Cryo-EM

Lauréne Donati , Emmanuel Soubies , Michael Unser
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
Communication dans un congrès hal-02048101v1

Joint density map and continuous angular refinement in cryo-electron microscopy

Mona Zehni , Lauréne Donati , Emmanuel Soubies , Zhizhen Zhao , Minh Do
IS&T International Symposium on Electronic Imaging, Jan 2019, Burlingame, United States. pp.133-1-133-5, ⟨10.2352/ISSN.2470-1173.2019.13.COIMG-133⟩
Communication dans un congrès hal-02428184v1
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Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Ellen van Obberghen-Schilling
IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759103⟩
Communication dans un congrès hal-02017862v1
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Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Daniel Sage , Michael Unser
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
Communication dans un congrès hal-02048083v1
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The Sliding Frank-Wolfe Algorithm for the BLASSO

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies
Workshop on Signal Processing with Adaptative Sparse Structured Representations - SPARS 2019, Sep 2019, Toulouse, France
Communication dans un congrès hal-03012568v1
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PHASELESS DIFFRACTION TOMOGRAPHY WITH REGULARIZED BEAM PROPAGATION

Thanh-An Pham , Emmanuel Soubies , Joowon Lim , Alexandre Goy , Ferréol Soulez
IEEE International Symposium on Biomedical Imaging (ISBI), 2018, Washington, United States
Communication dans un congrès hal-01978525v1

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems

Michael Unser , Emmanuel Soubies , Ferréol Soulez , Michael Mccann , Laurène Donati
OSA Imaging and Applied Optics Congress on Computational Optical Sensing and Imaging (COSI'17), 2017, San Francisco, United States
Communication dans un congrès insu-01632807v1
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Quelles relaxations continues pour le critère $l2-l0$ ?

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Colloque Gretsi, Sep 2017, Juan-Les-Pins, France. pp.4
Communication dans un congrès hal-01560319v1
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High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation

Simon Gazagnes , Emmanuel Soubies , Laure Blanc-Féraud
ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.4, ⟨10.1109/ISBI.2017.7950460⟩
Communication dans un congrès hal-01443565v1
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A Framework for Multi-angle Tirf Microscope Calibration

Emmanuel Soubies , Sébastien Schaub , Agata Radwanska , Ellen van Obberghen-Schilling , Laure Blanc-Féraud
ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2016.7493355⟩
Communication dans un congrès hal-01257736v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert
NCMIP 2016 - New Computational Methods for Inverse Problem , ENS Cachan, Apr 2016, Cachan, France
Communication dans un congrès hal-01349670v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert
Workshop ATLAS on mathematical and algorithmimcal approaches for high dimensional problems in data sciences. , GdR MaDICS, May 2016, Grenoble, France
Communication dans un congrès hal-01358112v1
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Seuillage CEL0 pour la minimisation l2- l0 : comparaisons avec IHT

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Colloque Gretsi, Sep 2015, Lyon, France. pp.4
Communication dans un congrès hal-01169557v1
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Cells Detection Using Segmentation Competition

Emmanuelle Poulain , Sylvain Prigent , Emmanuel Soubies , Xavier Descombes
ISBI - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States. ⟨10.1109/ISBI.2015.7164090⟩
Communication dans un congrès hal-01113167v1
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L0-Optimization for Channel and DOA Sparse Estimation

Adilson Chinatto , Emmanuel Soubies , Cynthia Junqueira , Joâo M. T. Romano , Pascal Larzabal
International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), Dec 2015, Cancun, Mexico. pp.305-308, ⟨10.1109/CAMSAP.2015.7383797⟩
Communication dans un congrès hal-01212042v1
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CEL0: a continuous alternative to l0 penalty

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Signal Processing with Adaptive Sparse Structured Representations (SPARS), Jul 2015, Cambridge, United Kingdom
Communication dans un congrès hal-01167192v1
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Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert
ICIP - International Conference on Image Processing, Oct 2014, Paris, France. pp.2844 - 2848, ⟨10.1109/ICIP.2014.7025575⟩
Communication dans un congrès hal-01037895v1
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A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert
ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩
Communication dans un congrès hal-00914998v1
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A 3D segmentation algorithm for ellipsoidal shapes. Application to nuclei extraction.

Emmanuel Soubiès , Pierre Weiss , Xavier Descombes
ICPRAM - International Conference on Pattern Recognition Applications and Methods, Feb 2013, Barcelona, Spain. pp.97-105
Communication dans un congrès hal-00733187v1

Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging

Emmanuel Soubies , Pierre Weiss , Xavier Descombes
Pattern Recognition Applications and Methods., 318, Springer-Verlag, pp.153-170, 2015, Advances in Intelligent Systems and Computing, 978-3-319-12610-4. ⟨10.1007/978-3-319-12610-4_10⟩
Chapitre d'ouvrage hal-01088384v1