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Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications

 Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest-Crollius , et al.
2020
Pré-publication, Document de travail hal-02791038v1

Synteny-guided resolution of gene trees clarifies the functional impact of whole-genome duplications

 Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest Crollius , et al.
Molecular Biology and Evolution, 2020, 37 (11), pp.3324-3337. ⟨10.1093/molbev/msaa149⟩
Article dans une revue hal-03038540v1
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Genome structures resolve the early diversification of teleost fishes

 Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques , et al.
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1
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Meet-U: educating through research immersion

 Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon , et al.
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Article dans une revue hal-01722019v1

The bowfin genome illuminates the developmental evolution of ray-finned fishes

 Andrew Thompson , M. Brent Hawkins , Elise Parey , Dustin Wcisel , Tatsuya Ota , et al.
Nature Genetics, 2021, ⟨10.1038/s41588-021-00914-y⟩
Article dans une revue hal-03329977v1
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Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits

 Elise Parey , Stephanie Frost , Ainhoa Uribarren , Thomas J Park , Markus Zoettl , et al.
2023
Pré-publication, Document de travail pasteur-04008255v1

Evolution of the Drosophila melanogaster Chromatin Landscape and Its Associated Proteins

 Elise Parey , Anton Crombach
Genome Biology and Evolution, 2019, 11 (3), pp.660-677. ⟨10.1093/gbe/evz019⟩
Article dans une revue hal-02064719v1
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An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

 Elise Parey , Alexandra Louis , Jérôme Montfort , Yann Guiguen , Hugues Roest Crollius , et al.
Genome Research, 2022, 32 (9), pp.1685 - 1697. ⟨10.1101/gr.276953.122⟩
Article dans une revue hal-03876769v1

SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event

 Elise Parey , Hugues Roest Crollius , Camille Berthelot
Yves Van de Peer. Polyploidy. Methods and Protocols, 2545, Springer US, pp.155-173, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2561-3_8⟩
Chapitre d'ouvrage hal-04345139v1
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Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications

 Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest Crollius , et al.
Molecular Biology and Evolution, 2020, 37, pp.3324 - 3337. ⟨10.1093/molbev/msaa149⟩
Article dans une revue hal-03457579v1

Meet-U: Educating through research immersion

 Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon , et al.
PLoS Computational Biology, 2018, 14 (3), pp.e1005992. ⟨10.1371/journal.pcbi.1005992⟩
Article dans une revue hal-04011118v1
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Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs

 Silke Jensen , Emilie Brasset , Elise Parey , Hugues Roest Crollius , Igor Sharakhov , et al.
Cells, 2020, 9 (6), pp.1491. ⟨10.3390/cells9061491⟩
Article dans une revue hal-02935810v1
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The bowfin genome illuminates the developmental evolution of ray-finned fishes

 Andrew W Thompson , M Brent Hawkins , Elise Parey , Dustin J Wcisel , Tatsuya Ota , et al.
Nature Genetics, 2021, 53, pp.1373 - 1384. ⟨10.1038/s41588-021-00914-y⟩
Article dans une revue hal-03457561v1
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