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Data from crosslinking and analysis of cDNAs (CRAC) of Nab3 in yeast cells expressing a circular ncRNA decoy

 Tommaso Villa , Yan Jaszczyszyn , Domenico Libri
Data in Brief, 2021, 35, pp.106951. ⟨10.1016/j.dib.2021.106951⟩
Article dans une revue hal-03390365v1
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Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.

 Wenhua Zhang , Bruno Collinet , Marc Graille , Marie-Claire Daugeron , Noureddine Lazar , et al.
Nucleic Acids Research, 2015, 43 (6), pp.3358-3372. ⟨10.1093/nar/gkv155⟩
Article dans une revue hal-01220993v1

Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts

 Romy Honorine , Christine Mosrin-Huaman , Nadege Hervouet-Coste , Domenico Libri , Rachid A. Rahmouni
Nucleic Acids Research, 2011, 39 (7), pp.2809-2820. ⟨10.1093/nar/gkq1192⟩
Article dans une revue hal-00602376v1
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Intronic sequence with both negative and positive effects on the regulation of alternative transcripts of the chicken β trophmyosin transcripts

 Laurent Balvay , Domenico Libri , Maria E. Gallego , Marc Fizman
Nucleic Acids Research, 1992, 20 (15), pp.3987 - 3992. ⟨10.1093/nar/20.15.3987⟩
Article dans une revue inserm-01907509v1
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Degradation of Non-coding RNAs Promotes Recycling of Termination Factors at Sites of Transcription

 Tommaso Villa , Mara Barucco , Maria-Jose Martin-Niclos , Alain Jacquier , Domenico Libri
Cell Reports, 2020, 32 (3), pp.107942. ⟨10.1016/j.celrep.2020.107942⟩
Article dans une revue hal-03025403v1

The Chromatin Remodeler ISW1 Is a Quality Control Factor that Surveys Nuclear mRNP Biogenesis

 Anna Babour , Qingtang Shen , Julien Dos-Santos , Struan Murray , Alexandre Gay , et al.
Cell, 2016, 167 (5), pp.1201 - 1214.e15. ⟨10.1016/j.cell.2016.10.048⟩
Article dans une revue hal-01725201v1
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Degradation of non-coding RNAs promotes recycling of termination factors at sites of transcription

 Tommaso Villa , Mara Barucco , Maria-Jose Martin-Niclos , Alain Jacquier , Domenico Libri
2019
Pré-publication, Document de travail hal-02406597v1
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An integrated model for termination of RNA polymerase III transcription

 Juanjuan Xie , Umberto Aiello , Yves Clement , Nouhou Haidara , Mathias Girbig , et al.
Science Advances , 2022, 8 (28), ⟨10.1126/sciadv.abm9875⟩
Article dans une revue hal-03853338v1

Yeast homolog of a cancer-testis antigen defines a new transcription complex.

 Elena Kisseleva-Romanova , Raffaele Lopreiato , Agnès Baudin-Baillieu , Jean-Claude Rousselle , Laila Ilan , et al.
EMBO Journal, 2006, 25 (15), pp.3576-85. ⟨10.1038/sj.emboj.7601235⟩
Article dans une revue hal-00133495v1

An autocrine loop involving ret and glial cell-derived neurotrophic factor mediates retinoic acid-induced neuroblastoma cell differentiation.

 Laura Cerchia , Amelia d'Alessio , Giovanni Amabile , Frederic Duconge , Carine Pestourie , et al.
Mol Cancer Res, 2006, 4 (7), pp.481-8. ⟨10.1158/1541-7786.MCR-06-0050⟩
Article dans une revue hal-00131571v1

Comparison of different strategies to select aptamers against a transmembrane protein target.

 Carine Pestourie , Laura Cerchia , Karine Gombert , Youssef Aissouni , Jocelyne Boulay , et al.
Oligonucleotides, 2006, 16 (4), pp.323-35. ⟨10.1089/oli.2006.16.323⟩
Article dans une revue hal-00168038v1
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Sen1 Is Recruited to Replication Forks via Ctf4 and Mrc1 and Promotes Genome Stability

 Rowin Appanah , Emma Claire Lones , Umberto Aiello , Domenico Libri , Giacomo de Piccoli
Cell Reports, 2020, 30 (7), pp.2094-2105.e9. ⟨10.1016/j.celrep.2020.01.087⟩
Article dans une revue hal-03453315v1

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants.

 Mathieu Rougemaille , Rajani Kanth Gudipati , Jens Raabjerg Olesen , Rune Thomsen , Bertrand Seraphin , et al.
EMBO Journal, 2007, 26 (9), pp.2317-26. ⟨10.1038/sj.emboj.7601669⟩
Article dans une revue hal-00167518v1

Binding to RNA regulates Set1 function

 Pierre Luciano , Jongcheol Jeon , Abdessamad El-Kaoutari , Drice Challal , Amandine Bonnet , et al.
Cell Discovery, 2017, 3, pp.17040. ⟨10.1038/celldisc.2017.40⟩
Article dans une revue hal-01787387v1

An integrated model for termination of RNA polymerase III transcription

 Juanjuan Xie , Umberto Aiello , Yves Clement , Nouhou Haidara , Mathias Girbig , et al.
2021
Pré-publication, Document de travail hal-03388729v1

Pervasive transcription fine-tunes replication origin activity

 Tito Candelli , Julien Gros , Domenico Libri
eLife, 2018, 7, ⟨10.7554/eLife.40802⟩
Article dans une revue hal-02406606v1

Extensive degradation of RNA precursors by the exosome in wild-type cells.

 Rajani Kanth Gudipati , Zhenyu Xu , Alice Lebreton , Bertrand Séraphin , Lars M Steinmetz , et al.
Molecular Cell, 2012, 48 (3), pp.409-21. ⟨10.1016/j.molcel.2012.08.018⟩
Article dans une revue hal-01350901v1
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Neutralizing aptamers from whole-cell SELEX inhibit the RET receptor tyrosine kinase.

 Laura Cerchia , Frederic Duconge , Carine Pestourie , Jocelyne Boulay , Youssef Aissouni , et al.
PLoS Biology, 2005, 3 (4), pp.e123. ⟨10.1371/journal.pbio.0030123⟩
Article dans une revue cea-00161297v1

General Regulatory Factors Control the Fidelity of Transcription by Restricting Non-coding and Ectopic Initiation

 Drice Challal , Mara Barucco , Slawomir Kubik , Frank Feuerbach , Tito Candelli , et al.
Molecular Cell, 2018, 72 (6), pp.955-969.e7. ⟨10.1016/j.molcel.2018.11.037⟩
Article dans une revue hal-02406559v1

Sleeping Beauty and the Beast (of pervasive transcription)

 Domenico Libri
RNA, 2015, 21 (4), pp.678-9. ⟨10.1261/rna.050948.115⟩
Article dans une revue hal-01221007v1

Ubiquitination-dependent control of sexual differentiation in fission yeast

 Fabrizio Simonetti , Tito Candelli , Sebastien Leon , Domenico Libri , Mathieu Rougemaille
eLife, 2017, 6, ⟨10.7554/eLife.28046⟩
Article dans une revue hal-02110287v1

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance.

 Marilyne Thiebaut , Elena Kisseleva-Romanova , Mathieu Rougemaille , Jocelyne Boulay , Domenico Libri
Molecular Cell, 2006, 23 (6), pp.853-64. ⟨10.1016/j.molcel.2006.07.029⟩
Article dans une revue hal-00130929v1

Transcription termination and the control of the transcriptome: why, where and how to stop.

 Odil Porrua , Domenico Libri
Nature Reviews Molecular Cell Biology, 2015, 16 (3), pp.190-202. ⟨10.1038/nrm3943⟩
Article dans une revue hal-01132404v1
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The S. cerevisiae m6A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts

 Jérémy Scutenaire , Damien Plassard , Mélody Matelot , Tommaso Villa , Julie Zumsteg , et al.
Nucleic Acids Research, In press, ⟨10.1093/nar/gkac640⟩
Article dans une revue hal-03824852v1

High-Frequency Promoter Firing Links THO Complex Function to Heavy Chromatin Formation

 John Mouaikel , Sebastien Z. Causse , Mathieu Rougemaille , Yves Daubenton-Carafa , Corinne Blugeon , et al.
Cell Reports, 2013, 5 (4), pp.1082-1094. ⟨10.1016/j.celrep.2013.10.013⟩
Article dans une revue hal-01528425v1

Endless Quarrels at the End of Genes.

 Domenico Libri
Molecular Cell, 2015, 60 (2), pp.192-4. ⟨10.1016/j.molcel.2015.10.004⟩
Article dans une revue hal-01269647v1

High-resolution transcription maps reveal the widespread impact of roadblock termination in yeast

 Tito Candelli , Drice Challal , Jean-Baptiste Briand , Jocelyne Boulay , Odil Porrua , et al.
EMBO Journal, 2018, ⟨10.15252/embj.201797490⟩
Article dans une revue hal-02176991v1
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Report of the Working Group on Electronic Lab Notebooks

 Gilles Mathieu , Tovo Rabemanantsoa , Christophe Chipeaux , Simon Duvillard , Jean-François Peyrat , et al.
Comité pour la science ouverte. 2021
Rapport hal-03959882v1
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Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs

 Marie-Claire Daugeron , Tineke L. Lenstra , Martina Frizzarin , Basma El Yacoubi , Xipeng Liu , et al.
Nucleic Acids Research, 2011, 39 (14), pp.6148--6160. ⟨10.1093/nar/gkr178⟩
Article dans une revue pasteur-01404019v1
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Termination of non‐coding transcription in yeast relies on both an RNA Pol II CTD interaction domain and a CTD‐mimicking region in Sen1

 Zhong Han , Olga Jasnovidova , Nouhou Haidara , Agnieszka Tudek , Karel Kubicek , et al.
EMBO Journal, 2020, 39 (7), ⟨10.15252/embj.2019101548⟩
Article dans une revue hal-03086464v1
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