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Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes

 Mylène Hugoni , Isabelle Domaizon , Najwa Taib , Corinne Biderre-Petit , Hélène Agogué , et al.
Environmental Microbiology Reports, 2015, 7 (2), pp.321-329. ⟨10.1111/1758-2229.12251⟩
Article dans une revue hal-01354841v1
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In vitro study of molecular weight, hydrophobicity and amino acid composition of peptides during breakdown of a casein hydrolysate by two strains of Prevotella ruminicola

 Nathalie Depardon , Didier Debroas , Gérard Blanchart
Reproduction Nutrition Development, 1998, 38 (5), pp.567-576
Article dans une revue hal-00900232v1

Chapitre XI: Fonctionnement des écosystèmes: métagénomique et intégration des omiques.

 Philippe Bertin , Télesphore Sime-Ngando , Didier Debroas , Denis Le Paslier , Roland Marmeisse , et al.
CNRS. Les cahiers prospectives Génomique environnementale (INEE-CNRS), les cahiers prospectives, pp.73-82, 2013
Chapitre d'ouvrage hal-00913463v1

Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments.

 Olga Savichtcheva , Didier Debroas , Rainer Kurmayer , Clement Villar , Jean-Philippe Jenny , et al.
Applied and Environmental Microbiology, 2011, 77 (24), pp.8744-53. ⟨10.1128/AEM.06106-11⟩
Article dans une revue hal-00840945v1
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Monitoring of enterovirus diversity in wastewater by ultra-deep sequencing: An effective complementary tool for clinical enterovirus surveillance

 Maxime Bisseux , Didier Debroas , Audrey Mirand , Christine Archimbaud , Hélène Peigue-Lafeuille , et al.
Water Research, 2020, 169, pp.115246. ⟨10.1016/j.watres.2019.115246⟩
Article dans une revue hal-02359343v1

Size-fractionated phytoplankton and relationships with metazooplankton in a newly flooded reservoir

 Remy D. Tadonleke , Antoine Thouvenot , D. Gilbert , Télesphore Sime-Ngando , Didier Debroas , et al.
International Review of Hydrobiology, 2003, 88 (6), pp.614-634
Article dans une revue hal-00527519v1

To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments

 Eric Capo , Isabelle Domaizon , Dominique Maier , Didier Debroas , Christian Bigler
Journal of Paleolimnology, 2017, 58 (4), pp.479 - 495. ⟨10.1007/s10933-017-0005-9⟩
Article dans une revue hal-01734500v1

Freshwater Perkinsea: diversity, ecology and genomic information

 M Jobard , I Wawrzyniak , G Bronner , D Marie , A Vellet , et al.
Journal of Plankton Research, 2020, 42 (1), pp.3-17. ⟨10.1093/plankt/fbz068⟩
Article dans une revue hal-02997226v1

Breakdown of peptides from a soya protein hydrolysate by rumen bacteria. Simultaneous study of enzyme activities and of two physico-chemical parameters: molecular weight and hydrophobicity

 N. Depardon , D. Debroas , Gérard Blanchart
Journal of the Science of Food and Agriculture, 1995, 68, pp.25-31
Article dans une revue hal-02705494v1
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Une nouvelle méthode de dosage des acides phénoliques dans les aliments

 N Jehl , D Debroas , G Blanchart
Annales de zootechnie, 1995, 44 (Suppl1), pp.33-33
Article dans une revue hal-00889197v1

Cinétique de la dégradation des protéines de soja par la pronase E et poids moléculaires des peptides libérés

 N. Depardon , D. Debroas , Gérard Blanchart
Annales de zootechnie, 1994, 43 (3), pp.269
Article dans une revue hal-02705477v1

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems

 Jean Francois Humbert , Ursula Dorigo , Philippe Cecchi , Brigitte Le Berre , Didier Debroas , et al.
Environmental Microbiology, 2009, 11 (9), pp.2339-2350. ⟨10.1111/j.1462-2920.2009.01960.x⟩
Article dans une revue istex hal-02663517v1

A strong link between marine microbial community composition and function challenges the idea of functional redundancy

 Pierre E. Galand , Olivier Pereira , Corentin Hochart , J.-C. Auguet , Didier Debroas
The International Society of Microbiologial Ecology Journal, 2018, 12 (10), pp.2470-2478. ⟨10.1038/s41396-018-0158-1⟩
Article dans une revue hal-02002181v1
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Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean

 Olivier Pereira , Corentin Hochart , J.-C. Auguet , Didier Debroas , Pierre Galand
MicrobiologyOpen, 2019, 8 (9), pp.e00852. ⟨10.1002/mbo3.852⟩
Article dans une revue hal-02283229v1

Seasonality of archaeal proteorhodopsin and associated Marine Group IIb ecotypes (Ca. Poseidoniales) in the North Western Mediterranean Sea

 Olivier Pereira , Corentin Hochart , Dominique Boeuf , Jean-Christophe Auguet , Didier Debroas , et al.
The International Society of Microbiologial Ecology Journal, 2021, 15 (5), pp.1302--1316. ⟨10.1038/s41396-020-00851-4⟩
Article dans une revue hal-03415635v1

Une diversité encore méconnue au sein des biofilms à Cyanobactéries benthiques dans les rivières

 Anouk Zancarini , Isidora Echenique-Subiabre , Didier Debroas , Catherine Quiblier , Jean-François Humbert
Génomique Environnementale, Nov 2013, Rennes, France
Poster de conférence hal-04080932v1

Genetic diversity of freshwater small eukaryotes in the largest french natural lake (Bourget)

 Cécile Lepère , Isabelle Domaizon , Didier Debroas
European Large Lakes Symposium 2006 - Ecosystem changes and their ecological and socioeconomic impacts, Sep 2006, Tartu, Estonia. 1 p., 2006
Poster de conférence hal-02811582v1
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How does environmental inter-annual variability shape aquatic microbial communities? A 40-year annual record of sedimentary DNA from a boreal lake (Nylandssjön, Sweden)

 Eric Capo , Johan Rydberg , Julie Tolu , Isabelle Domaizon , Didier Debroas , et al.
Frontiers in Ecology and Evolution, 2019, 7, ⟨10.3389/fevo.2019.00245⟩
Article dans une revue hal-02618844v1

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes.

 Jean-François Mangot , Isabelle Domaizon , Najwa Taib , Nemr Marouni , Emilie Duffaud , et al.
Environmental Microbiology, 2012, 15 (6), epub ahead of print. ⟨10.1111/1462-2920.12065⟩
Article dans une revue istex hal-00821927v1

Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web

 Jean-François Mangot , Cécile Lepère , Christophe Bouvier , Didier Debroas , Isabelle Domaizon
Applied and Environmental Microbiology, 2009, 75 (19), pp.6373-81. ⟨10.1128/AEM.00607-09⟩
Article dans une revue hal-00528240v1

Phage bacteriolysis, protistan bacterivory potential, and bacterial production in a freshwater reservoir : Coupling with temperature

 Angia Sriram Pradeep Ram , D. Boucher , Télesphore Sime-Ngando , Didier Debroas , J. C. Romagoux
Microbial ecology, 2005, 50 (1), pp.64-72
Article dans une revue hal-00527475v1

Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in lakes

 D. Debroas , F. Enault , I. Jouan-Dufournel , Gisèle Bronner , Jean Francois Humbert
Handbook of molecular microbial ecology II: Metagenomics in different habitats, Wiley-Blackwell, 2011, 978-0-470-64719-6
Chapitre d'ouvrage hal-02806048v1
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Breakdown of peptides from a casein hydrolysate by rumen bacteria. Simultaneous study of enzyme activities and physicochemical parameters

 N Depardon , D Debroas , G Blanchart
Reproduction Nutrition Development, 1996, 36 (5), pp.457-466
Article dans une revue hal-00899915v1

Evolution de la taille et du caractère hydrophobe des peptides (tryptone) au cours de la protéolyse par les bactéries du rumen

 N. Depardon , D. Debroas , Gérard Blanchart
Annales de zootechnie, 1994, 43, pp.11-64
Article dans une revue hal-02703843v1

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems

 Jf Humbert , U. Dorigo , P. Cecchi , B. Le Berre , D. Debroas , et al.
Environmental Microbiology, 2009, 11 (9), pp.2339-2350
Article dans une revue bioemco-00452832v1

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

 Simon Roux , Jeremy Tournayre , Antoine Mahul , Didier Debroas , François Enault
BMC Bioinformatics, 2014, 15 (1), pp.76. ⟨10.1186/1471-2105-15-76⟩
Article dans une revue hal-04446172v1

Relative importance of nutrients and mortality factors on prokaryotic community composition in two lakes of different trophic status: Microcosm experiments

 Ludwig Jardillier , Delphine Boucher , Denis Sargos , Christian Amblard , Didier Debroas
FEMS Microbiology Ecology, 2005, 53 (3), pp.429-443. ⟨10.1016/j.femsec.2005.01.011⟩
Article dans une revue istex hal-04262979v1
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Diel rhythm does not shape the vertical distribution of bacterial and archaeal 16S rRNA transcript diversity in intertidal sediments: a mesocosm study Running title: Diel activities of benthic Bacteria and Archaea

 Céline Lavergne , Mylène Hugoni , Cédric Hubas , Didier Debroas , Christine Dupuy , et al.
Microbial ecology, 2018, 75 (2), pp.364-374. ⟨10.1007/s00248-017-1048-1⟩
Article dans une revue hal-01573359v1
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Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

 David Singer , Christophe V W Seppey , Guillaume Lentendu , Micah Dunthorn , David Bass , et al.
Environment International, 2021, 146, pp.106262. ⟨10.1016/j.envint.2020.106262⟩
Article dans une revue hal-03028115v1
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Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

 Eric Capo , Charline Giguet-Covex , Alexandra Rouillard , Kevin Nota , Peter Heintzman , et al.
Quaternary, 2021, 4 (1), pp.6. ⟨10.3390/quat4010006⟩
Article dans une revue hal-03218984v1
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