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Novel classifier orthologs of bovine and human oocytes matured in different melatonin environments

Thanida Sananmuang , Denis Puthier , Catherine Nguyen , Kaj Chokeshaiusaha
Theriogenology, 2020, 156, pp.82-89. ⟨10.1016/j.theriogenology.2020.06.029⟩
Article dans une revue hal-03015699v1

An evaluation of the role of gene expression in the prediction and diagnosis of ventilator-associated pneumonia

J. Textoris , B. Loriod , L. Benayoun , P. A. Gourraud , Denis Puthier , et al.
Anesthesiology, 2011, 115 (2), pp.344--352. ⟨10.1097/ALN.0b013e318225ba26⟩
Article dans une revue hal-01595818v1
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Epigenetic regulation of transcription factor binding motifs promotes Th1 response in Chagas disease cardiomyopathy

Pauline Brochet , Barbara Maria Ianni , Laurie Laugier , Amanda Farage Frade , João Paulo Silva Nunes , et al.
Frontiers in Immunology, 2022, 13, ⟨10.3389/fimmu.2022.958200⟩
Article dans une revue hal-03831919v1

[Functions of lncRNA in development and diseases]

E. L. Mathieu , M. Belhocine , L. T. Dao , Denis Puthier , S. Spicuglia
Med Sci (Paris), 2014, 30 (8-9), pp.790--796. ⟨10.1051/medsci/20143008018⟩
Article dans une revue hal-01595813v1
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An innovative approach to predict immune-associated genes mutually targeted by cow and human milk microRNAs expression profiles

Kaj Chokeshaiusaha , Thanida Sananmuang , Denis Puthier , Catherine Nguyen
Veterinary World, 2018, 11 (9), pp.1203-1209. ⟨10.14202/vetworld.2018.1203-1209⟩
Article dans une revue hal-01977762v1

E2F transcription factors associated with up-regulated genes in glioblastoma

F. S. Donaires , P. R. Godoy , G. S. Leandro , Denis Puthier , E. T. Sakamoto-Hojo
Cancer Biomarkers, 2017, 18 (2), pp.199--208. ⟨10.3233/CBM-161628⟩
Article dans une revue hal-01595808v1

Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice

N. F. Delahaye , N. Coltel , Denis Puthier , M. Barbier , P. Benech , et al.
BMC Genomics, 2007, 8, pp.452
Article dans une revue hal-01595820v1

Thrombin-induced endothelial microparticle generation: identification of a novel pathway involving ROCK-II activation by caspase-2

Cedric Sapet , S. Simoncini , B. Loriod , Denis Puthier , J. Sampol , et al.
Blood, 2006, 108 (6), pp.1868 - 1876. ⟨10.1182/blood-2006-04-014175⟩
Article dans une revue hal-01595821v1
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A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation

Wiam Saadi , Yasmina Kermezli , Lan Dao , Evelyne Mathieu , David Santiago-Algarra , et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-41247-5⟩
Article dans une revue hal-02078114v1

Inspection of C-type lectin superfamily expression profile in chicken and mouse dendritic cells

Kaj Chokeshaiusaha , Roongroje Thanawongnuwech , Denis Puthier , Catherine Nguyen
THAI JOURNAL OF VETERINARY MEDICINE, 2016, 46 (3), pp.443-453
Article dans une revue hal-01460130v1

A general survey of thymocyte differentiation by transcriptional analysis of knockout mouse models

Denis Puthier , F. Joly , M. Irla , M. Saade , G. Victorero , et al.
Journal of Immunology, 2004, 173 (10), pp.6109--6118. ⟨10.4049/jimmunol.173.10.6109⟩
Article dans une revue hal-01595825v1
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Explore, edit and leverage genomic annotations using Python GTF toolkit

Fabrice Lopez , Guillaume Charbonnier , Yasmina Kermezli , Mohamed Belhocine , Quentin Ferré , et al.
Article dans une revue hal-02078147v1
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TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database

F. Lopez , J. Textoris , A. Bergon , G. Didier , E. Rémy , et al.
PLoS ONE, 2008, 3 (12), pp.e4001. ⟨10.1371/journal.pone.0004001⟩
Article dans une revue hal-01595819v1
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RNA-Guided Genomic Localization of H2A.L.2 Histone Variant

Naghmeh Hoghoughi , Sophie Barral , Sandrine Curtet , Florent Chuffart , Guillaume Charbonnier , et al.
Cells, 2020, 9 (2), pp.474. ⟨10.3390/cells9020474⟩
Article dans une revue hal-02773006v1

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters.

Afsaneh Goudarzi , Di Zhang , He Huang , Sophie Barral , Oh Kwang Kwon , et al.
Molecular Cell, 2016, 62 (2), pp.169-80. ⟨10.1016/j.molcel.2016.03.014⟩
Article dans une revue hal-01341099v1
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Nucleoside diphosphate kinases 1 and 2 regulate a protective liver response to a high-fat diet

Domenico Iuso , Isabel Garcia-Saez , Yohann Couté , Yoshiki Yamaryo-Botté , Elisabetta Boeri Erba , et al.
Science Advances , 2023, 9 (36), pp.eadh0140. ⟨10.1126/sciadv.adh0140⟩
Article dans une revue hal-04216158v1
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Entropy measures quantify global splicing disorders in cancer.

William Ritchie , Samuel Granjeaud , Denis Puthier , Daniel Gautheret
PLoS Computational Biology, 2008, 4 (3), pp.e1000011. ⟨10.1371/journal.pcbi.1000011⟩
Article dans une revue hal-00286322v1
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Widespread Enhancer Activity from Core Promoters

Alejandra Medina-Rivera , David Santiago-Algarra , Denis Puthier , Salvatore Spicuglia
Trends in Biochemical Sciences, 2018, 43 (6), pp.452 - 468. ⟨10.1016/j.tibs.2018.03.004⟩
Article dans une revue hal-01808594v1

Gene profiling approach to establish the molecular bases for partial versus full activation of naïve CD8 T lymphocytes

G. Verdeil , Denis Puthier , Cong Tu Nguyen , A. M. Schmitt-Verhulst , N. Auphan-Anezin
Annals of the New York Academy of Sciences, 2002, 975, pp.68--76
Article dans une revue hal-01595827v1

Adhesion molecules on human myeloma cells: significant changes in expression related to malignancy, tumor spreading, and immortalization

C. Pellat-Deceunynck , S. Barille , Denis Puthier , M. J. Rapp , J. L. Harousseau , et al.
Cancer Research, 1995, 55 (16), pp.3647--3653
Article dans une revue hal-01595839v1

Mcl-1 and Bcl-xL are co-regulated by IL-6 in human myeloma cells

Denis Puthier , S. Derenne , S. Barille , P. Moreau , J. L. Harousseau , et al.
Br. J. Haematol., 1999, 107 (2), pp.392--395
Article dans une revue hal-01595834v1
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The Contribution of Multiplexing Single Cell RNA Sequencing in Acute Myeloid Leukemia

Lamia Madaci , Charlyne Gard , Sébastien Nin , Geoffroy Venton , Pascal Rihet , et al.
Diseases, 2023, 11 (3), pp.96. ⟨10.3390/diseases11030096⟩
Article dans une revue hal-04161267v1

Genomic organization and the tissue distribution of alternatively spliced isoforms of the mouse Spatial gene

M. Irla , Denis Puthier , S. Granjeaud , M. Saade , G. Victorero , et al.
BMC Genomics, 2004, 5 (1), pp.41
Article dans une revue hal-01595824v1

Interferon alpha extends the survival of human myeloma cells through an upregulation of the Mcl-1 anti-apoptotic molecule

Denis Puthier , W. Thabard , M. Rapp , M. Etrillard , J. Harousseau , et al.
Br. J. Haematol., 2001, 112 (2), pp.358--363
Article dans une revue hal-01595829v1

Differential expression of Bcl-2 in human plasma cell disorders according to proliferation status and malignancy

Denis Puthier , Catherine Pellat-Deceunynck , S. Barille , N. Robillard , M. J. Rapp , et al.
Leukemia, 1999, 13 (2), pp.289--294
Article dans une revue hal-01595832v1

The gp 130 family cytokines IL-6, LIF and OSM but not IL-11 can reverse the anti-proliferative effect of dexamethasone on human myeloma cells

N. Juge-Morineau , S. François , Denis Puthier , A. Godard , R. Bataille , et al.
Br. J. Haematol., 1995, 90 (3), pp.707--710
Article dans une revue hal-01595838v1
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Divergent transcription is associated with promoters of transcriptional regulators.

Cyrille Lepoivre , Mohamed Belhocine , Aurélie Bergon , Aurélien Griffon , Miriam Yammine , et al.
BMC Genomics, 2013, 14 (1), pp.914. ⟨10.1186/1471-2164-14-914⟩
Article dans une revue inserm-00924629v1
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TranscriptomeBrowser 3.0 : introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Cyrille Lepoivre , Aurélie Bergon , Fabrice Lopez , Narayanan Perumal , Catherine Nguyen , et al.
BMC Bioinformatics, 2012, 13 (1), pp.19. ⟨10.1186/1471-2105-13-19⟩
Article dans une revue inserm-00676438v1
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Platelets Alter Gene Expression Profile in Human Brain Endothelial Cells in an In Vitro Model of Cerebral Malaria

Mathieu Barbier , Dorothée Faille , Béatrice B. Loriod , Julien Textoris , Claire Camus , et al.
PLoS ONE, 2011, 6 (5), pp.e19651. ⟨10.1371/journal.pone.0019651⟩
Article dans une revue hal-01743259v1
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Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene

Jaafar Alomairi , Anne Molitor , Nori Sadouni , Saadat Hussain , Magali Torres , et al.
PLoS ONE, 2020, 15 (5), pp.e0233191. ⟨10.1371/journal.pone.0233191⟩
Article dans une revue hal-02773600v1