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Empreinte du vivant L'ADN de l'environnement

Dominique D. Joly , Denis Faure , Sylvie Salamitou
2015
Ouvrages hal-02269003v1

Species Diversity of Dickeya and Pectobacterium Causing Potato Blackleg Disease in Pakistan

Sohaib Sarfraz , Shahbaz Talib Sahi , Saïd Oulghazi , Kashif Riaz , Nasir Ahmed Rajput , et al.
Plant Disease, 2020, pp.PDIS08191743RE. ⟨10.1094/PDIS-08-19-1743-RE⟩
Article dans une revue hal-02509021v1

Complete Genome Sequence of the Type Strain Pectobacterium punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms

Sohaib Sarfraz , Saïd Oulghazi , Jeremy Cigna , Shahbaz Talib Sahi , Kashif Riaz , et al.
Microbiology Resource Announcements, 2020, 9 (32), ⟨10.1128/MRA.00420-20⟩
Article dans une revue hal-02928171v1
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European population of $Pectobacterium\ punjabense$: Genomic diversity, tuber maceration capacity and a detection tool for this rarely occurring potato pathogen

Jeremy Cigna , Angélique Laurent , Malgorzata Waleron , Krzysztof Waleron , Pauline Dewaegeneire , et al.
Microorganisms, 2021, 9 (4), pp.781. ⟨10.3390/microorganisms9040781⟩
Article dans une revue hal-03285249v1

Integrative and deconvolution omics approaches to uncover the Agrobacterium tumefaciens lifestyle in plant tumors

Almudena Gonzalez-Mula , Marta Torres , Denis Faure
Plant Signaling and Behavior, 2019, 14 (3), pp.e1581562. ⟨10.1080/15592324.2019.1581562⟩
Article dans une revue hal-02171001v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot , et al.
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Article dans une revue hal-00135468v1

AHL-mediated quorum-sensing in Azospirillum: an exception rather than a rule.

L. Vial , C. Cuny , K. Gluchoff-Fiasson , G. Comte , Philippe M. Oger , et al.
Microbial ecology, 2006, 58, pp.155-168
Article dans une revue hal-00342700v1
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Is there a unique integration mechanism of $Agrobacterium $ T‐DNA into a plant genome?

Denis Faure
New Phytologist, 2021, 229, pp.2386-2388. ⟨10.1111/nph.17184⟩
Article dans une revue hal-03843954v1

Pectobacterium punjabense sp nov., isolated from blackleg symptoms of potato plants in Pakistan

Sohaib Sarfraz , Kashif Riaz , Said Oulghazi , Jeremy Cigna , Shahbaz Talib Sahi , et al.
International Journal of Systematic and Evolutionary Microbiology, 2018, 68 (11), pp.3551--3556. ⟨10.1099/ijsem.0.003029⟩
Article dans une revue hal-02183690v1

A gapA PCR-sequencing Assay for Identifying the Dickeya and Pectobacterium Potato Pathogens

Jeremy Cigna , Pauline Dewaegeneire , Amélie Beury , Virginie Gobert , Denis Faure
Plant Disease, 2017, 101 (7), pp.1278--1282. ⟨10.1094/PDIS-12-16-1810-RE⟩
Article dans une revue hal-02192067v1

La génomique environnementale: la révolution du séquençage à haut débit

Denis Faure , Dominique Joly
ISTE Editions, 2016, 978-1-78405-151-8
Ouvrages hal-02393768v1

Plant GABA:proline ratio modulates dissemination of the virulence Ti plasmid within the Agrobacterium tumefaciens hosted population.

Julien Lang , Denis Faure
Plant Signaling and Behavior, 2016, 11 (5), pp.e1178440. ⟨10.1080/15592324.2016.1178440⟩
Article dans une revue hal-01442044v1

Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone.

Cathy d'Angelo-Picard , Denis Faure , Aurélien Carlier , Stéphane Uroz , Aurélie Raffoux , et al.
FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩
Article dans une revue hal-00122912v1

Draft Genome Sequences of Pseudomonas fluorescens Strains PA4C2 and PA3G8 and Pseudomonas putida PA14H7, Three Biocontrol Bacteria against Dickeya Phytopathogens.

Jeremy Cigna , Yannick Raoul Des Essarts , Samuel Mondy , Valérie Hélias , Amélie Beury-Cirou , et al.
Genome Announcements, 2015, 3 (1), pp.e01503-14. ⟨10.1128/genomeA.01503-14⟩
Article dans une revue hal-01436131v1

Environmental microbiology reveals the Earth secret life.

Denis Faure , Patricia Bonin , Robert Duran
Environmental Science and Pollution Research, 2015, 22 (18), pp.13573-6
Article dans une revue hal-01201676v1

Efficient Biostimulation of Native and Introduced Quorum-Quenching Rhodococcus erythropolis Populations Is Revealed by a Combination of Analytical Chemistry, Microbiology, and Pyrosequencing.

Amélie Cirou , Samuel Mondy , Shu An , Amélie Charrier , Amélie Sarrazin , et al.
Applied and Environmental Microbiology, 2012, 78 (2), pp.481-92. ⟨10.1128/AEM.06159-11⟩
Article dans une revue hal-00658497v1

Biocontrol of the Potato Blackleg and Soft Rot Diseases Caused by Dickeya dianthicola.

Yannick Raoul Des Essarts , Jeremy Cigna , Angélique Quêtu-Laurent , Aline Caron , Euphrasie Munier , et al.
Applied and Environmental Microbiology, 2016, 82 (1), pp.268-78. ⟨10.1128/AEM.02525-15⟩
Article dans une revue hal-01430031v1

Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens

Nadia Mhedbi-Hajri , Noura Yahiaoui , Samuel Mondy , Nathalie Hue , Franck Pélissier , et al.
37. Annual Crown Gall Conference, Plate-forme de Gestion de Congrès Scientifique., Nov 2016, Bloomington, United States
Communication dans un congrès hal-01602219v1
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Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco

Saïd Oulghazi , Mohieddine Moumni , Slimane Khayi , Kévin Robic , Sohaib Sarfraz , et al.
Microorganisms, 2020, 8 (6), pp.895. ⟨10.3390/microorganisms8060895⟩
Article dans une revue hal-02877933v1

Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.

Loïc Marty , Armelle Vigouroux , Magali Aumont-Nicaise , Yves Dessaux , Denis Faure , et al.
Journal of Biological Chemistry, 2016, 291 (43), pp.22638-22649. ⟨10.1074/jbc.M116.745562⟩
Article dans une revue hal-01440866v1

[Violacein: a molecule of biological interest originating from the soil-borne bacterium Chromobacterium violaceum]. La violacéine : une molécule d'intérêt biologique, issue de la bactérie tellurique Chromobacterium violaceum.

Y. Dessaux , C. Elmerich , D. Faure
La Revue de Médecine Interne, 2004, 25 (9), pp.659-62. ⟨10.1016/j.revmed.2004.03.012⟩
Article dans une revue istex hal-00122746v1
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Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host

Julien Lang , Armelle Vigouroux , Sara Planamente , Abbas El Sahili , Pauline Blin , et al.
PLoS Pathogens, 2014, 10 (10), ⟨10.1371/journal.ppat.1004444⟩
Article dans une revue hal-02634348v1

Diversity to the function of low soil anthropised

Stéphane S. Uroz , Roland Marmeisse , Marc Buée , Yves Dessaux , Denis Faure , et al.
Biofutur, 2011, 319, pp.39 - 43
Article dans une revue hal-02642096v1

101 secrets de l’ADN

Denis Faure , Dominique Joly , Sylvie Salamitou
CNRS Editions. 368 p., 2019, 978-2-271-12323-7
Ouvrages hal-02370904v1
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Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens.

Nadia Mhedbi-Hajri , Noura Yahiaoui , Samuel Mondy , Nathalie Hue , Franck Pélissier , et al.
BMC Genomics, 2016, 17 (1), pp.661. ⟨10.1186/s12864-016-3007-5⟩
Article dans une revue hal-01440877v1

Insight on environmental genomics: the high-throughput sequencing revolution

Denis Faure , Dominique Joly
2016, 978-0-08-101091-4
Ouvrages hal-03754581v1
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Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani

Slimane Khayi , Pauline Blin , Jacques Pédron , Teik-Min Chong , Kok-Gan Chan , et al.
BMC Genomics, 2015, 16 (1), pp.788. ⟨10.1186/s12864-015-1997-z⟩
Article dans une revue hal-01217226v1

Lifestyle of the biotroph Agrobacterium tumefaciens in the ecological niche constructed on its host plant

Almudena Gonzalez-Mula , Julien Lang , Catherine Grandclément , Delphine Naquin , Mohammed Ahmar , et al.
New Phytologist, 2018, 219 (1), pp.350-362. ⟨10.1111/nph.15164⟩
Article dans une revue hal-02110550v1

The Ti Plasmid of Agrobacterium tumefaciens Harbors an attM-Paralogous Gene, aiiB, Also Encoding N-Acyl Homoserine Lactonase Activity

A. Carlier , Stephane Uroz , B. Smadja , R. Fray , X. Latour , et al.
Applied and Environmental Microbiology, 2003, 69 (8), pp.4989-4993. ⟨10.1128/AEM.69.8.4989-4993.2003⟩
Article dans une revue hal-02921665v1
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N,N'-alkylated Imidazolium-derivatives act as quorum-sensing inhibitors targeting the Pectobacterium atrosepticum-induced symptoms on potato tubers.

Yannick Raoul Des Essarts , Mohamad Sabbah , Arnaud Comte , Laurent Soulère , Yves Queneau , et al.
International Journal of Molecular Sciences, 2013, 14 (10), pp.19976-19986. ⟨10.3390/ijms141019976⟩
Article dans une revue hal-00919246v1