Davide Degli Esposti

Chargé de Recherche

Documents

Affiliations actuelles

1002498

Identifiants chercheurs

davide-degli-esposti
ResearcherId : M-1917-2015
0000-0003-1390-4845
IdRef : 153085479
ResearcherId : http://www.researcherid.com/rid/M-1917-2015

Domaines de recherche

Compétences

research coordination, data analysis, molecular biology

Publications

	Editorial trend: adverse outcome pathway (AOP) and computational strategy — towards new perspectives in ecotoxicology Damien Baudiffier , Karine Audouze , Olivier Armant , Sandrine Frelon , Sandrine Charles Environmental Science and Pollution Research, 2024, ⟨10.1007/s11356-023-30647-w⟩ Article dans une revue hal-04296774v1
	Concomitant investigation of crustacean amphipods lipidome and metabolome during the molting cycle by Zeno SWATH data-independent acquisition coupled with electron activated dissociation and machine learning Thomas Alexandre Brunet , Yohann Clément , Valentina Calabrese , Jérôme Lemoine , Olivier Geffard Analytica Chimica Acta, 2024, 1304, pp.342533. ⟨10.1016/j.aca.2024.342533⟩ Article dans une revue hal-04535105v1
	Identification and organ-specific patterns of expression of two metallothioneins in the sentinel species Gammarus fossarum Davide Degli Esposti , Auréline Lalouette , Karen Gaget , Louveline Lepeule , Zineb Chaabi Comparative Biochemistry and Physiology. Part B, Biochemistry and Molecular Biology, 2024, 269, pp.110907. ⟨10.1016/j.cbpb.2023.110907⟩ Article dans une revue hal-04372171v1
	Electron-activated dissociation (EAD) for the complementary annotation of metabolites and lipids through data-dependent acquisition analysis and feature-based molecular networking, applied to the sentinel amphipod Gammarus fossarum Valentina Calabrese , Thomas Alexandre Brunet , Davide Degli-Esposti , Arnaud Chaumot , Olivier Geffard Analytical and Bioanalytical Chemistry, 2024, ⟨10.1007/s00216-024-05232-w⟩ Article dans une revue hal-04507595v1
	Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants Maxime Leprêtre , Arnaud Chaumot , Rayan Aboud , Nicolas Delorme , Anabelle Espeyte Science of the Total Environment, 2023, 893, pp.164875. ⟨10.1016/j.scitotenv.2023.164875⟩ Article dans une revue hal-04358369v1
	Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species Maxime Leprêtre , Davide Degli Esposti , Kevin Sugier , Anabelle Espeyte , Jean-Charles Gaillard Scientific Data , 2023, 10 (1), pp.643. ⟨10.1038/s41597-023-02545-w⟩ Article dans une revue hal-04372093v1
	Determination of biomarkers threshold values and illustration of their use for the diagnostic in large-scale freshwater biomonitoring surveys Maxime Leprêtre , Alain Geffard , Mélissa Palos Ladeiro , Odile Dedourge-Geffard , Elise David Environmental Sciences Europe , 2022, 34 (1), pp.115. ⟨10.1186/s12302-022-00692-2⟩ Article dans une revue hal-04047998v1
	From Extrapolation to Precision Chemical Hazard Assessment: The Ecdysone Receptor Case Study Raquel Ruivo , João Sousa , Teresa Neuparth , Olivier Geffard , Arnaud Chaumot Toxics, 2022, 10 (1), pp.8. ⟨10.3390/toxics10010006⟩ Article dans une revue hal-03788309v1
	Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition Tingting Fu , Oskar Knittelfelder , Yohann Clément , Eric Testet , Nicolas Elie iScience, 2021, 24 (2), pp.1-44. ⟨10.1016/j.isci.2021.102115⟩ Article dans une revue hal-03134038v1
	Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum Natacha Koenig , Christine Almunia , Aurore Bonnal-Conduzorgues , Jean Armengaud , Arnaud Chaumot Aquatic Toxicology, 2021, 235, pp.105816. ⟨10.1016/j.aquatox.2021.105816⟩ Article dans une revue hal-04460510v1
	Des bioessais écotoxicologiques in situ pour évaluer les impacts biologiques de la contamination chimique des cours d'eau nationaux : l'expérience du gammare Arnaud Chaumot , Olivier Perceval , Rémi Recoura-Massaquant , Davide Degli Esposti , Olivier Geffard Sciences Eaux & Territoires, 2021, 37, pp.88-91. ⟨10.14758/SET-REVUE.2021.4.16⟩ Article dans une revue hal-03601759v1
	Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome Claudia Cosio , Davide Degli-Esposti , Christine Almunia , Véronique Gaillet , Hervé Sartelet Environmental Science and Technology, 2021, 55 (15), pp.10514 - 10523. ⟨10.1021/acs.est.1c02385⟩ Article dans une revue hal-03376460v1
	Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition Tingting Fu , Oskar Knittelfelder , Olivier Geffard , Yohann Clément , Eric Testet iScience, 2021, 24 (2), pp.102115. ⟨10.1016/j.isci.2021.102115⟩ Article dans une revue hal-04427014v1
	Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum Natacha Koenig , Christine Almunia , Aurore Bonnal-Conduzorgues , Jean Armengaud , Arnaud Chaumot Aquatic Toxicology, 2021, 235, ⟨10.1016/j.aquatox.2021.105816⟩ Article dans une revue hal-03487859v1
	A “Population Dynamics” Perspective on the Delayed Life-History Effects of Environmental Contaminations: An Illustration with a Preliminary Study of Cadmium Transgenerational Effects over Three Generations in the Crustacean Gammarus Pauline Cribiu , Alain Devaux , Laura Garnero , Khedidja Abbaci , Thérèse Bastide International Journal of Molecular Sciences, 2020, 21 (13), pp.4704. ⟨10.3390/ijms21134704⟩ Article dans une revue hal-02921628v1
	High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics Julien Faugere , Duarte Gouveia , Sophie Ayciriex , Arnaud Chaumot , Christine Almunia Journal of Proteomics, 2020, 226, ⟨10.1016/j.jprot.2020.103901⟩ Article dans une revue hal-02903090v1
	In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging Tingting Fu , Janina Oetjen , Manuel Chapelle , Alexandre Verdu , Matthias Szesny Journal of Mass Spectrometry, 2020, 55 (9), pp.e4531. ⟨10.1002/jms.4531⟩ Article dans une revue hal-03113280v1
	Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host Duarte Gouveia , Olivier Pible , Karen Culotta , Virginie Jouffret , Olivier Geffard npj Biofilms and Microbiomes, 2020, 6 (1), pp.7. ⟨10.1038/s41522-020-0133-2⟩ Article dans une revue hal-02922047v1
	Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms Yannick Cogne , Duarte Gouveia , Arnaud Chaumot , Davide Degli Esposti , Olivier Geffard Proteomics, 2020, 20 (10), pp.1-11. ⟨10.1002/pmic.201900261⟩ Article dans une revue hal-02922078v1
	De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups Yannick Cogne , Davide Degli Esposti , O. Pible , D. Gouveia , Adeline François Scientific Data , 2019, 6 (1), pp.7. ⟨10.1038/s41597-019-0192-5⟩ Article dans une revue hal-02610005v1
	Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques Stéphane Pesce , J.D. Ferrari , C. Bonnineau , C. Casado , L. Apotheloz Perret Gentil Sciences Eaux & Territoires, 2019, HS, pp.9. ⟨10.14758/SET-REVUE.2019.hs.04⟩ Article dans une revue hal-02609267v1
	Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum Davide Degli Esposti , C. Almunia , M.A. Guery , N. Koenig , J. Armengaud Scientific Reports, 2019, 9, pp.10. ⟨10.1038/s41598-019-44203-5⟩ Article dans une revue hal-02610032v1
	Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium Yannick Cogne , Christine Almunia , Duarte Gouveia , Olivier Pible , Adeline François Aquatic Toxicology, 2019, 214, pp.105244. ⟨10.1016/j.aquatox.2019.105244⟩ Article dans une revue hal-02922064v1
	Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment Duarte Gouveia , Christine Almunia , Yannick Cogne , Olivier Pible , Davide Degli Esposti Journal of Proteomics, 2019, 198, pp.66-77. ⟨10.1016/j.jprot.2018.12.001⟩ Article dans une revue hal-02109172v1
	The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region Nora Fernandez-Jimenez , Koldo Garcia-Etxebarria , Leticia Plaza-Izurieta , Irati Romero-Garmendia , Amaia Jauregi-Miguel Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-37746-6⟩ Article dans une revue hal-02983598v1
	Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum Davide Degli Esposti , Christine Almunia , Marc-Antoine Guery , Natacha Koenig , Jean Armengaud Scientific Reports, 2019, 9 (1), pp.7862. ⟨10.1038/s41598-019-44203-5⟩ Article dans une revue hal-04460506v1
	In vitro transformation of primary human hepatocytes: Epigenetic changes and stemness properties Floriane Pez , Patricia Gifu , Davide Degli-Esposti , Nadim Fares , Anaïs Lopez Experimental Cell Research, 2019, 384, pp.111643 -. ⟨10.1016/j.yexcr.2019.111643⟩ Article dans une revue hal-03488431v1
	Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild D. Gouveia , Yannick Cogne , J.C. Gaillard , C. Almunia , O. Pible Data in Brief, 2019, 27, pp.6. ⟨10.1016/j.dib.2019.104650⟩ Article dans une revue hal-02610033v1
	Co-expression network analysis identifies gonad- and embryo- associated protein modules in the sentinel species Gammarus fossarum Davide Degli Esposti , Christine Almunia , Marc-Antoine Guery , Natacha Koenig , J. Armengaud Scientific Reports, 2019, 9 (1), pp.1-10. ⟨10.1038/s41598-019-44203-5⟩ Article dans une revue hal-02622270v1
	Digging deeper into the pyriproxyfen-response of the amphipod Gammarus fossarum with a next-generation ultra-high-field Orbitrap analyser: new perspectives for environmental toxicoproteomics J. Trapp , D. Gouveia , C. Almunia , O. Pible , Davide Degli Esposti Frontiers in Environmental Science, 2018, 6, 31 p. ⟨10.3389/fenvs.2018.00054⟩ Article dans une revue hal-02074284v1
	Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum D. Gouveia , F. Bonneton , C. Almunia , J. Armengaud , H. Queau Scientific Reports, 2018, 8 (3793), ⟨10.1038/s41598-018-22235-7⟩ Article dans une revue hal-02073105v1
	Glycogen synthase kinase 3-mediated voltage-dependent anion channel phosphorylation controls outer mitochondrial membrane permeability during lipid accumulation. Cecile Martel , Maya Allouche , Davide Degli Esposti , Elena Fanelli , Céline Boursier Hepatology, 2013, 57 (1), pp.93-102. ⟨10.1002/hep.25967⟩ Article dans une revue hal-00734262v1
	First experimental evidence of peritoneal and pleural mesotheliomas induced by fluoro-edenite fibres present in Etnean volcanic material from Biancavilla (Sicily, Italy) Morando Soffritti , Franco Minardi , Luciano Bua , Davide Degli Esposti , Fiorella Belpoggi European Journal of Oncology, 2004 Article dans une revue hal-04359150v1

	Ecotoxicology, aquatic invertebrates Arnaud Chaumot , Davide Degli Esposti , Miguel Santos , Olivier Geffard Encyclopedia of Toxicology, Elsevier, pp.23-30, 2024, ⟨10.1016/B978-0-12-824315-2.00116-0⟩ Chapitre d'ouvrage hal-04372207v1
	New Challenges: Omics Technologies in Ecotoxicology Odette Prat , Davide Degli Esposti Ecotoxicology: New Challenges And New Approaches, inPress Chapitre d'ouvrage hal-02964531v1

	Concomitant investigation of crustacean amphipods lipidome and metabolome during molting stage by Zeno SWATH Data-Independent Acquisition coupled with Electron Activated Dissociation and machine learning Thomas Alexandre Brunet , Yohann Clement , Valentina Calabrese , Jerome Lemoine , Olivier Geffard 2023 Pré-publication, Document de travail hal-04328990v1

	Protéomique ciblée pour la quantification multiplexée de biomarqueurs, perspectives pour la surveillance environnementale Anabelle Espeyte , Davide Degli Esposti , Maxime Leprêtre , Hugo Detante , Kevin Sugier INRAE RiverLy. 2023 Rapport hal-04138910v1
	Protéomique ciblée pour la quantification multiplexée de biomarqueurs: perspectives pour la surveillance environnementale. Construction d'une stratégie partagée et généralisable entre espèces pour l'identification de protéines d'intérêt - Cas d'étude chez Gammarus fossarum (Rapport d'étape) Anabelle Espeyte , Davide Degli-Esposti , Julien Faugère , Sophie Ayciriex , Arnaud Salvador INRAE; OFB. 2019 Rapport hal-03971107v1

	Les mécanismes de réponse à l'inflammation chronique dans le foie stéatosique et les conséquences sur l'homéostasie cellulaire et la cancérogénèse Davide Degli Esposti Sciences agricoles. Université Paris Sud - Paris XI, 2011. Français. ⟨NNT : 2011PA114809⟩ Thèse tel-00652594v1

	Intérêt des approches -omiques en écotoxicologie moléculaire : démonstration chez une espèce sentinelle, le crustacé d’eau douce Gammarus fossarum. Davide Degli Esposti Ecotoxicologie. Université de Lyon, 2023 HDR tel-04358438v1

Davide Degli Esposti

Domaines de recherche

Compétences

Publications

Editorial trend: adverse outcome pathway (AOP) and computational strategy — towards new perspectives in ecotoxicology

Concomitant investigation of crustacean amphipods lipidome and metabolome during the molting cycle by Zeno SWATH data-independent acquisition coupled with electron activated dissociation and machine learning

Identification and organ-specific patterns of expression of two metallothioneins in the sentinel species Gammarus fossarum

Electron-activated dissociation (EAD) for the complementary annotation of metabolites and lipids through data-dependent acquisition analysis and feature-based molecular networking, applied to the sentinel amphipod Gammarus fossarum

Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants

Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species

Determination of biomarkers threshold values and illustration of their use for the diagnostic in large-scale freshwater biomonitoring surveys

From Extrapolation to Precision Chemical Hazard Assessment: The Ecdysone Receptor Case Study

Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition

Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum

Des bioessais écotoxicologiques in situ pour évaluer les impacts biologiques de la contamination chimique des cours d'eau nationaux : l'expérience du gammare

Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome

Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition

Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum

A “Population Dynamics” Perspective on the Delayed Life-History Effects of Environmental Contaminations: An Illustration with a Preliminary Study of Cadmium Transgenerational Effects over Three Generations in the Crustacean Gammarus

High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics

In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging

Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host

Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms

De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups

Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques

Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum

Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium

Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment

The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region

Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum

In vitro transformation of primary human hepatocytes: Epigenetic changes and stemness properties

Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild

Co-expression network analysis identifies gonad- and embryo- associated protein modules in the sentinel species Gammarus fossarum

Digging deeper into the pyriproxyfen-response of the amphipod Gammarus fossarum with a next-generation ultra-high-field Orbitrap analyser: new perspectives for environmental toxicoproteomics

Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum

Glycogen synthase kinase 3-mediated voltage-dependent anion channel phosphorylation controls outer mitochondrial membrane permeability during lipid accumulation.

First experimental evidence of peritoneal and pleural mesotheliomas induced by fluoro-edenite fibres present in Etnean volcanic material from Biancavilla (Sicily, Italy)

Ecotoxicology, aquatic invertebrates

New Challenges: Omics Technologies in Ecotoxicology

Concomitant investigation of crustacean amphipods lipidome and metabolome during molting stage by Zeno SWATH Data-Independent Acquisition coupled with Electron Activated Dissociation and machine learning

Protéomique ciblée pour la quantification multiplexée de biomarqueurs, perspectives pour la surveillance environnementale

Les mécanismes de réponse à l'inflammation chronique dans le foie stéatosique et les conséquences sur l'homéostasie cellulaire et la cancérogénèse

Intérêt des approches -omiques en écotoxicologie moléculaire : démonstration chez une espèce sentinelle, le crustacé d’eau douce Gammarus fossarum.