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UMD-Predictor: A High-Throughput Sequencing Compliant System for Pathogenicity Prediction of any Human cDNA Substitution

David Salgado , Jean-Pierre Desvignes , Ghadi Rai , Arnaud Blanchard , Morgane Miltgen , et al.
Human Mutation, 2016, 37 (5), pp.439 - 446. ⟨10.1002/humu.22965⟩
Article dans une revue hal-01670164v1
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Overview of the interactive task in BioCreative V

Qinghua Wang , Shabbir S. Abdul , Lara Almeida , Sophia Ananiadou , Yalbi I. Balderas-Martinez , et al.
Database - The journal of Biological Databases and Curation, 2016, 2016, ⟨10.1093/database/baw119⟩
Article dans une revue hal-01469079v1
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Transgenesis and web resources in quail

Olivier Serralbo , David Salgado , Nadège Véron , Caitlin Cooper , Marie-Julie Dejardin , et al.
Article dans une revue hal-03222583v1
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VarAFT: a variant annotation and filtration system for human next generation sequencing data

Jean-Pierre Desvignes , Marc Bartoli , Valérie Delague , Martin Krahn , Morgane Miltgen , et al.
Nucleic Acids Research, 2018, 46 (W1), pp.W545-W553. ⟨10.1093/nar/gky471⟩
Article dans une revue hal-01852493v1
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Identification of Splicing Defects Caused by Mutations in the Dysferlin Gene

Virginie Kergourlay , Ghadi Rai , Gaëlle Blandin , David Salgado , Christophe Béroud , et al.
Human Mutation, 2014, 35 (12), pp.1532-1541. ⟨10.1002/humu.22710⟩
Article dans une revue hal-01610021v1
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[OISO, automatic treatment of patients management in oncogenetics].

Celine Guien , Aurelie J Fabre , Arnaud Lagarde , David Salgado , Catherine Gensollen-Thiriez , et al.
Bulletin du Cancer, 2017, 104 (7-8), pp.602 - 607. ⟨10.1016/j.bulcan.2017.06.003⟩
Article dans une revue hal-01680483v1

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Martin Krallinger , Miguel Vazquez , Florian Leitner , David Salgado , Andrew Chatr-Aryamontri , et al.
BMC Bioinformatics, 2011, 12 (Suppl 8), ⟨10.1186/1471-2105-12-S8-S3⟩
Article dans une revue hal-01780325v1

Piezo1 is required for outflow tract and aortic valve development

Adèle Faucherre , Hamid Moha Ou Maati , Nathalie Nasr , Amélie Pinard , Alexis Theron , et al.
2019
Pré-publication, Document de travail hal-02404255v1
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IFB/ELIXIR-FR, the french node of ELIXIR

Anne-Françoise Adam-Blondon , Jacques van Helden , Gildas Le Corguillé , Christophe Blanchet , Hélène Chiapello , et al.
ISMB ECCB 2023, International Society for Computational Biology, Jul 2023, Lyon, France
Communication dans un congrès hal-04503051v1
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WES/WGS Reporting of Mutations from Cardiovascular "Actionable" Genes in Clinical Practice: A Key Role for UMD Knowledgebases in the Era of Big Databases

Amélie Pinard , David Salgado , Jean-Pierre Desvignes , Ghadi Rai , Nadine Hanna , et al.
Human Mutation, 2016, Next Generation Sequencing and Human Genetic Disease, 37 (12), pp.1308-1317. ⟨10.1002/humu.23119⟩
Article dans une revue hal-01457375v1

Mapping the differences in care for 5,000 Spinal Muscular Atrophy patients, a survey of 24 national registries in North America, Australasia and Europe

Catherine Bladen , Rachel Thompson , Jacqueline M Jackson , Connie Garland , Claire Wegel , et al.
Journal of Neurology, 2014, 261 (1), pp.152 - 163. ⟨10.1007/s00415-013-7154-1⟩
Article dans une revue hal-01681799v1
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Clinical Outcomes in Duchenne Muscular Dystrophy: A Study of 5345 Patients from the TREAT-NMD DMD Global Database

Zaïda Koeks , Catherine L Bladen , David Salgado , Erik van Zwet , Oksana Pogoryelova , et al.
Journal of Neuromuscular Diseases, 2017, 4 (4), pp.293 - 306. ⟨10.3233/JND-170280⟩
Article dans une revue hal-01681734v1

Neural crest regulates myogenesis through the transient activation of NOTCH

Anne Rios , Olivier Serralbo , David Salgado , Christophe Marcelle
Nature, 2011, 473 (7348), pp.532 - 535. ⟨10.1038/nature09970⟩
Article dans une revue istex hal-01780066v1
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Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Eric Deutsch , Catherine Ball , Jules Berman , G Steven Bova , Alvis Brazma , et al.
Nature Biotechnology, 2008, 26 (3), pp.305 - 312. ⟨10.1038/nbt1391⟩
Article dans une revue hal-01780056v1

Minimum information specification for in situ hybridization and immunohistochemistry experiments

E.W. Deutsch , C.A. Ball , J.J. Berman , G.S. Bova , A. Brazma , et al.
Nature Biotechnology, 2008, 26 (3), pp.305-12
Article dans une revue hal-00303113v1

Coverage analysis of lists of genes involved in heterogeneous genetic diseases following benchtop exome sequencing using the ion proton

Caroline Lacoste , Jean-Pierre Desvignes , David Salgado , Christophe Pecheux , Laurent Villard , et al.
Journal of Genetics, 2016, 95 (1), pp.203-208
Article dans une revue hal-01469051v1

The TREAT-NMD DMD Global Database: Analysis of More than 7,000 Duchenne Muscular Dystrophy Mutations

Catherine Bladen , David Salgado , Soledad Monges , Maria E Foncuberta , Kyriaki Kekou , et al.
Human Mutation, 2015, 36 (4), pp.395 - 402. ⟨10.1002/humu.22758⟩
Article dans une revue hal-01681769v1

TGFβ signalling acts as a molecular brake of myoblast fusion

Julie Melendez , Daniel Sieiro , David Salgado , Valérie Morin , Marie-Julie Dejardin , et al.
Nature Communications, 2021, 12 (1), pp.749. ⟨10.1038/s41467-020-20290-1⟩
Article dans une revue hal-03662775v1
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Novel heterozygous mutation in ANO3 responsible for craniocervical dystonia

Morgane Miltgen , Arnaud Blanchard , Hélène Mathieu , Alexandre Kreisler , Jean-Pierre Desvignes , et al.
Movement Disorders, 2016, 31 (8), pp.1251-1252. ⟨10.1002/mds.26717⟩
Article dans une revue hal-01670172v1
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New advances in DPYD genotype and risk of severe toxicity under capecitabine

Marie-Christine Etienne-Grimaldi , Christophe Boyer , Christophe Béroud , Litaty Mbatchi , André van Kuilenburg , et al.
PLoS ONE, 2017, 12 (5), pp.e0175998. ⟨10.1371/journal.pone.0175998⟩
Article dans une revue hal-01780001v1
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BRCA Share: A Collection of Clinical BRCA Gene Variants

Christophe Béroud , Stanley I Letovsky , Corey D Braastad , Sandrine M Caputo , Olivia Beaudoux , et al.
Human Mutation, 2016, Next Generation Sequencing and Human Genetic Disease, 37 (12), pp.1318-1328. ⟨10.1002/humu.23113⟩
Article dans une revue hal-01670197v1
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QUANTUM MECHANICS AND MAGIC: AN OPEN DISCUSSION

Miguel Ferrero , David Salgado , José Luís Sánchez-Gómez
2014
Pré-publication, Document de travail hal-01057583v1
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Actionable Genes, Core Databases, and Locus-Specific Databases

Amélie Pinard , Morgane Miltgen , Arnaud Blanchard , Hélène Mathieu , Jean-Pierre Desvignes , et al.
Human Mutation, 2016, 37 (12, SI), pp.1299-1307. ⟨10.1002/humu.23112⟩
Article dans une revue hal-01469071v1
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Whole Exome Sequencing Reveals a Large Genetic Heterogeneity and Revisits the Causes of Hypertrophic Cardiomyopathy

Karine Nguyen , Stéphane Roche , Erwan Donal , Sylvie Odent , Jean-Christophe Eicher , et al.
Circulation: Genomic and Precision Medicine, 2019, 12 (5), pp.e002500. ⟨10.1161/CIRCGEN.119.002500⟩
Article dans une revue hal-02140150v1
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The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program

O. Tassy , D. Dauga , F. Daian , D. Sobral , F. Robin , et al.
Genome Research, 2010, 20 (10), pp.1459-68. ⟨10.1101/gr.108175.110⟩
Article dans une revue hal-00555212v1
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Exome sequencing identifies recurrent BCOR alterations and the absence of KLF2, TNFAIP3 and MYD88 mutations in splenic diffuse red pulp small B-cell lymphoma.

Laurent Jallades , Lucile Baseggio , Pierre Sujobert , Sarah Huet , Kaddour Chabane , et al.
Haematologica, 2017, 102 (10), pp.1758 - 1766. ⟨10.3324/haematol.2016.160192⟩
Article dans une revue hal-01583112v1
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Piezo1 is required for outflow tract and aortic valve development.

Adèle Faucherre , Hamid Moha Ou Maati , Nathalie Nasr , Amélie Pinard , Alexis Theron , et al.
Journal of Molecular and Cellular Cardiology, 2020, 143, pp.51-62. ⟨10.1016/j.yjmcc.2020.03.013⟩
Article dans une revue hal-02863713v1
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Identification of a peripheral blood gene signature predicting aortic valve calcification

Donal Macgrogan , Beatriz Martínez-Poveda , Jean-Pierre Desvignes , Leticia Fernandez-Friera , Manuel José Gomez , et al.
Physiological Genomics, 2020, 52 (12), pp.563-574. ⟨10.1152/physiolgenomics.00034.2020⟩
Article dans une revue hal-02965646v1
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Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis

Tui Neri , Emilye Hiriart , Patrick P. Van Vliet , Emilie Faure , Russell A. Norris , et al.
Nature Communications, 2019, 10, pp.1929. ⟨10.1038/s41467-019-09459-5⟩
Article dans une revue hal-02461454v1

COMPARE, a multi-organism system for cross-species data comparison and transfer of information

David Salgado , G. Gimenez , F. Coulier , C. Marcelle
Bioinformatics, 2008, 24 (3), pp.447-449. ⟨10.1093/bioinformatics/btm599⟩
Article dans une revue hal-00305995v1