Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
Sabeur Aridhi
,
Rabie Saidi
,
Alexandre Renaux
,
et al.
Function-SIG ISMB/ECCB 2017 , Jul 2017, Prague, Czech Republic. 2017
Poster de conférence
hal-01573079v1
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HexServer: an FFT-based protein docking server powered by graphics processors
Gary Macindoe
,
Lazaros Mavridis
,
Vishwesh Venkatraman
,
Marie-Dominique Devignes
,
David Ritchie
Article dans une revue
inria-00522712v1
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DockTrina: Docking triangular protein trimers
Petr Popov
,
David Ritchie
,
Sergei Grudinin
Article dans une revue
hal-00880359v1
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Spherical polar Fourier assembly of protein complexes with arbitrary point group symmetry
David W. Ritchie
,
Sergei Grudinin
Article dans une revue
hal-01261402v1
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Integrated horn antenna for microstrip waveguide THz quantum cascade lasers
Stefano Barbieri
,
Jesse Alton
,
Sukhdeep S Dhillon
,
Carlo Sirtori
,
Jean-Francois Lampin
,
et al.
Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference , May 2007, Baltimore, MD, United States. pp.CWP4,
⟨10.1109/CLEO.2007.4453214⟩
Communication dans un congrès
hal-00284100v1
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KBDOCK 2013: A spatial classification of 3D protein domain family interactions
Anisah Ghoorah
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
Article dans une revue
hal-00920612v1
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PDB-wide identification of biological assemblies from conserved quaternary structure geometry
Sucharita Dey
,
David Ritchie
,
Emmanuel D Levy
Article dans une revue
hal-01652359v1
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Whole Number Recursion Formulae for High Order Clebsch-Gordan Coupling Coefficients
David Ritchie
2018
Pré-publication, Document de travail
hal-01851097v1
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Calculating and scoring high quality multiple flexible protein structure alignments
David Ritchie
Article dans une revue
hal-01371083v1
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Associating Gene Ontology Terms with Pfam Protein Domains
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
David Ritchie
5th International Work-Conference on Bioinformatics and Biomedical Engineering - IWBBIO 2017 , Apr 2017, Granada, Spain. pp.127-138,
⟨10.1007/978-3-319-56154-7_13⟩
Communication dans un congrès
hal-01531204v1
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EROS-DOCK and EROS-DOCK MULTI-BODY Approach
Maria-Elisa Ruiz-Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
CAPRI evaluation meeting , Apr 2019, Hinxton, United Kingdom
Communication dans un congrès
hal-02394484v1
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EROS: A Protein Docking Algorithm Using a Quaternion Pi-Ball Representation for Exhaustive and Accelerated Exploration of 3D Rotational Space
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
APIL 2018 - Journée d'automne de l'Ecole Doctorale IAEM-Lorraine , Nov 2018, Nancy, France
Poster de conférence
hal-01929546v1
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HIV-PDI: A Protein Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 2. Examples of Use and Proof-of-Concept
Leo Ghemtio
,
Michel Souchet
,
Appolinaire Djikeng
,
Lionel Keminse
,
Patricia Kelbert
,
et al.
Article dans une revue
hal-00642567v1
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Recent Trends and Applications in 3D Virtual Screening
Leo Ghemtio
,
Violeta I. Pérez-Nueno
,
Vincent Leroux
,
Yasmine Asses
,
Michel Souchet
,
et al.
Combinatorial Chemistry and High Throughput Screening , 2012, 15 (9), pp.749-769
Article dans une revue
hal-00756800v1
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Using Graphics Processors to Accelerate Protein Docking Calculations
David Ritchie
,
Vishwesh Venkatraman
,
Lazaros Mavridis
HealthGrid 2010 , 2010, Paris, France
Communication dans un congrès
inria-00537989v1
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Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection
Serena Ferraresso
,
Heiner Kuhl
,
Massimo Milan
,
David Ritchie
,
Christopher J. Secombes
,
et al.
Article dans une revue
inria-00434259v1
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Spatial clustering of protein binding sites for template based protein docking
Anisah Ghoorah
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
Article dans une revue
inria-00617921v1
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Fast Protein Structure Alignment using Gaussian Overlap Scoring of Backbone Peptide Fragment Similarity
David Ritchie
,
Anisah Ghoorah
,
Lazaros Mavridis
,
Vishwesh Venkatraman
Article dans une revue
hal-00756813v1
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GES Polypharmacology Fingerprints: A Novel Approach for Drug Repositioning
Violeta Pérez-Nueno
,
Arnaud Sinan Karaboga
,
Michel Souchet
,
David Ritchie
Article dans une revue
hal-01092928v1
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EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
David Ritchie
Communication dans un congrès
hal-01216743v1
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EROS-DOCK: Protein-Protein Docking Using Exhaustive Branch-and-Bound Rotational Search
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
Article dans une revue
hal-02269812v1
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SHREC'10 Track: Protein Models
Lazaros Mavridis
,
Vishwesh Venkatraman
,
David Ritchie
,
Naoto Morikawa
,
Rumen Andonov
,
et al.
Eurographics Workshop on 3D Object Retrieval - 3DOR 2010 , May 2010, Norrköping, Sweden
Communication dans un congrès
inria-00536680v1
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Modeling Beta-trefoil proteins using an object-oriented database
David Ritchie
,
Antonis Koussounadis
,
Christopher J. Secombes
Annual British National Conference on Databases (BNCOD21) , 2004, Edinburgh, United Kingdom. pp.59-67
Communication dans un congrès
inria-00434280v1
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A Comprehensive Comparison of Ligand-Based Virtual Screening Tools Against the DUD Data set Reveals Limitations of Current 3D Methods
Vishwesh Venkatraman
,
Violeta I. Pérez-Nueno
,
Lazaros Mavridis
,
David Ritchie
Article dans une revue
inria-00540762v1
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Terahertz plasmonic antennas for quantum cascade lasers
Tahsin Akalin
,
Wilfried Maineult
,
Pierre Gellie
,
Emilien Peytavit
,
Alessio Andronico
,
et al.
Communication dans un congrès
hal-00474429v1
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Beam shaping and ultrafast modulation of THz quantum cascade lasers
Stefano Barbieri
,
Wilfried Maineult
,
Sukhdeep S Dhillon
,
Carlo Sirtori
,
Jean-Francois Lampin
,
et al.
European Microwave Week, Workshop ‘From THz devices to systems : Design, Modeling, Processes and Characterization' , 2007, Munich, Germany
Communication dans un congrès
hal-00286314v1
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gEMfitter: A highly parallel FFT-based 3D density fitting tool with GPU texture memory acceleration
Thai V. Hoang
,
Xavier Cavin
,
David Ritchie
Article dans une revue
hal-00866871v1
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Naihui Zhou
,
Yuxiang Jiang
,
Timothy Bergquist
,
Alexandra Lee
,
Balint Kacsoh
,
et al.
Article dans une revue
hal-02393202v1
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Toward High Throughput 3D Virtual Screening Using Spherical Harmonic Surface Representations
Lazaros Mavridis
,
Brian D. Hudson
,
David Ritchie
Article dans une revue
istex
inria-00434267v1
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A Non-Atom-Based Paradigm for Modeling, QSAR and QSPR
Tim Clark
,
Martyn Ford
,
Jonathan Essex
,
W. Graham Richards
,
David Ritchie
EuroQSAR 2004 , 2004, Ankara, Turkey. pp.383-395
Communication dans un congrès
inria-00434279v1
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