Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
Sabeur Aridhi
,
Rabie Saidi
,
Alexandre Renaux
,
et al.
Function-SIG ISMB/ECCB 2017 , Jul 2017, Prague, Czech Republic. 2017
Poster de conférence
hal-01573079v1
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Spherical polar Fourier assembly of protein complexes with arbitrary point group symmetry
David W. Ritchie
,
Sergei Grudinin
Article dans une revue
hal-01261402v1
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DockTrina: Docking triangular protein trimers
Petr Popov
,
David Ritchie
,
Sergei Grudinin
Article dans une revue
hal-00880359v1
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Integrated horn antenna for microstrip waveguide THz quantum cascade lasers
Stefano Barbieri
,
Jesse Alton
,
Sukhdeep S Dhillon
,
Carlo Sirtori
,
Jean-Francois Lampin
,
et al.
Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference , May 2007, Baltimore, MD, United States. pp.CWP4,
⟨10.1109/CLEO.2007.4453214⟩
Communication dans un congrès
hal-00284100v1
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KBDOCK 2013: A spatial classification of 3D protein domain family interactions
Anisah Ghoorah
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
Article dans une revue
hal-00920612v1
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HexServer: an FFT-based protein docking server powered by graphics processors
Gary Macindoe
,
Lazaros Mavridis
,
Vishwesh Venkatraman
,
Marie-Dominique Devignes
,
David Ritchie
Article dans une revue
inria-00522712v1
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Whole Number Recursion Formulae for High Order Clebsch-Gordan Coupling Coefficients
David Ritchie
2018
Pré-publication, Document de travail
hal-01851097v1
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Calculating and scoring high quality multiple flexible protein structure alignments
David Ritchie
Article dans une revue
hal-01371083v1
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Associating Gene Ontology Terms with Pfam Protein Domains
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
David Ritchie
5th International Work-Conference on Bioinformatics and Biomedical Engineering - IWBBIO 2017 , Apr 2017, Granada, Spain. pp.127-138,
⟨10.1007/978-3-319-56154-7_13⟩
Communication dans un congrès
hal-01531204v1
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EROS-DOCK and EROS-DOCK MULTI-BODY Approach
Maria-Elisa Ruiz-Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
CAPRI evaluation meeting , Apr 2019, Hinxton, United Kingdom
Communication dans un congrès
hal-02394484v1
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EROS: A Protein Docking Algorithm Using a Quaternion Pi-Ball Representation for Exhaustive and Accelerated Exploration of 3D Rotational Space
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
APIL 2018 - Journée d'automne de l'Ecole Doctorale IAEM-Lorraine , Nov 2018, Nancy, France
Poster de conférence
hal-01929546v1
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HIV-PDI: A Protein Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 2. Examples of Use and Proof-of-Concept
Leo Ghemtio
,
Michel Souchet
,
Appolinaire Djikeng
,
Lionel Keminse
,
Patricia Kelbert
,
et al.
Article dans une revue
hal-00642567v1
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Recent Trends and Applications in 3D Virtual Screening
Leo Ghemtio
,
Violeta I. Pérez-Nueno
,
Vincent Leroux
,
Yasmine Asses
,
Michel Souchet
,
et al.
Combinatorial Chemistry and High Throughput Screening , 2012, 15 (9), pp.749-769
Article dans une revue
hal-00756800v1
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Using Graphics Processors to Accelerate Protein Docking Calculations
David Ritchie
,
Vishwesh Venkatraman
,
Lazaros Mavridis
HealthGrid 2010 , 2010, Paris, France
Communication dans un congrès
inria-00537989v1
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Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection
Serena Ferraresso
,
Heiner Kuhl
,
Massimo Milan
,
David Ritchie
,
Christopher J. Secombes
,
et al.
Article dans une revue
inria-00434259v1
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Spatial clustering of protein binding sites for template based protein docking
Anisah Ghoorah
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
Article dans une revue
inria-00617921v1
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Fast Protein Structure Alignment using Gaussian Overlap Scoring of Backbone Peptide Fragment Similarity
David Ritchie
,
Anisah Ghoorah
,
Lazaros Mavridis
,
Vishwesh Venkatraman
Article dans une revue
hal-00756813v1
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PDB-wide identification of biological assemblies from conserved quaternary structure geometry
Sucharita Dey
,
David Ritchie
,
Emmanuel D Levy
Article dans une revue
hal-01652359v1
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gEMpicker: a highly parallel GPU-accelerated particle picking tool for cryo-electron microscopy
Thai Hoang
,
Xavier Cavin
,
Patrick Schultz
,
David Ritchie
Article dans une revue
hal-00955580v1
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A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnip
Sandro Roselli
,
Alexandre Olry
,
Sonia Vautrin
,
Olivier O. Coriton
,
David Ritchie
,
et al.
Article dans une revue
hal-01531248v1
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Recent Progress and Future Directions in Protein-Protein Docking
David Ritchie
Article dans une revue
inria-00434268v1
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Protein-protein docking based on shape complementarity and Voronoi fingerprint
Thomas Bourquard
,
Jérôme Azé
,
Anne Poupon
,
David Ritchie
Journées Ouvertes Biologie Informatique Mathématiques , Jun 2011, Paris, France. pp.9-16
Communication dans un congrès
inria-00613186v1
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Using Consensus-Shape Clustering To Identify Promiscuous Ligands and Protein Targets and To Choose the Right Query for Shape-Based Virtual Screening
Violeta I. Pérez-Nueno
,
David Ritchie
Article dans une revue
inria-00617922v1
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Kbdock - Searching and organising the structural space of protein-protein interactions
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
ERCIM News , 2016, 104, pp.24-25
Article dans une revue
hal-01258117v1
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EROS-DOCK for Pairwise and Multi-body Protein-Protein Docking
Maria-Elisa Ruiz-Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
Journée MASIM2019 (Méthodes Algorithmiques pour les Structures et Interactions Macromoléculaires) , Nov 2019, Paris, France
Communication dans un congrès
hal-02391973v1
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Accelerating Protein Docking Calculations using the ATTRACT Coarse-Grained Force Field and 3D Rotation Maps
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
GGMM 2017 - Groupe de Graphisme et Modélisation Moléculaire , May 2017, Reims, France
Poster de conférence
hal-01927271v1
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Computational Discovery of Direct Associations between GO terms and Protein Domains
Seyed Ziaeddin Alborzi
,
David Ritchie
,
Marie-Dominique Devignes
Article dans une revue
hal-01777508v1
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Microwave modulation of terahertz quantum cascade lasers : a transmission-line approach
Wilfried Maineult
,
Lu Ding
,
Pierre Gellie
,
Pascal Filloux
,
Carlo Sirtori
,
et al.
Article dans une revue
hal-00548728v1
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Protein Docking Using Case-Based Reasoning
Anisah Ghoorah
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
Proteins - Structure, Function and Bioinformatics , 2013, 81 (12), pp.2150-2158.
⟨10.1002/prot.24433⟩
Article dans une revue
istex
hal-00880341v1
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Biological Profiling of Anti-HIV Agents and Insight into CCR5 Antagonist Binding Using in silico Techniques
Antonio Carrieri
,
Violeta I. Pérez-Nueno
,
Alessandra Fano
,
Carlo Pistone
,
David Ritchie
,
et al.
Article dans une revue
istex
inria-00434260v1
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