Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

96 résultats
Image document

Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations

Seyed Ziaeddin Alborzi , Marie-Dominique Devignes , Sabeur Aridhi , Rabie Saidi , Alexandre Renaux , et al.
Function-SIG ISMB/ECCB 2017, Jul 2017, Prague, Czech Republic. 2017
Poster de conférence hal-01573079v1
Image document

Spherical polar Fourier assembly of protein complexes with arbitrary point group symmetry

David W. Ritchie , Sergei Grudinin
Journal of Applied Crystallography, 2016, 49 (1), pp.158-167. ⟨10.1107/S1600576715022931⟩
Article dans une revue hal-01261402v1

DockTrina: Docking triangular protein trimers

Petr Popov , David Ritchie , Sergei Grudinin
Proteins: Structure, Function, and Genetics, 2014, 82 (1), pp.34-44. ⟨10.1002/prot.24344⟩
Article dans une revue hal-00880359v1

Integrated horn antenna for microstrip waveguide THz quantum cascade lasers

Stefano Barbieri , Jesse Alton , Sukhdeep S Dhillon , Carlo Sirtori , Jean-Francois Lampin , et al.
Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference, May 2007, Baltimore, MD, United States. pp.CWP4, ⟨10.1109/CLEO.2007.4453214⟩
Communication dans un congrès hal-00284100v1

KBDOCK 2013: A spatial classification of 3D protein domain family interactions

Anisah Ghoorah , Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
Nucleic Acids Research, 2014, 42 (D1), pp.389-395. ⟨10.1093/nar/gkt1199⟩
Article dans une revue hal-00920612v1
Image document

HexServer: an FFT-based protein docking server powered by graphics processors

Gary Macindoe , Lazaros Mavridis , Vishwesh Venkatraman , Marie-Dominique Devignes , David Ritchie
Nucleic Acids Research, 2010, 38, pp.W445-W449. ⟨10.1093/nar/gkq311⟩
Article dans une revue inria-00522712v1
Image document

Whole Number Recursion Formulae for High Order Clebsch-Gordan Coupling Coefficients

David Ritchie
2018
Pré-publication, Document de travail hal-01851097v1
Image document

Calculating and scoring high quality multiple flexible protein structure alignments

David Ritchie
Bioinformatics, 2016, 32 (17), pp.2650-2658. ⟨10.1093/bioinformatics/btw300⟩
Article dans une revue hal-01371083v1
Image document

Associating Gene Ontology Terms with Pfam Protein Domains

Seyed Ziaeddin Alborzi , Marie-Dominique Devignes , David Ritchie
5th International Work-Conference on Bioinformatics and Biomedical Engineering - IWBBIO 2017, Apr 2017, Granada, Spain. pp.127-138, ⟨10.1007/978-3-319-56154-7_13⟩
Communication dans un congrès hal-01531204v1
Image document

EROS-DOCK and EROS-DOCK MULTI-BODY Approach

Maria-Elisa Ruiz-Echartea , Isaure Chauvot de Beauchêne , David Ritchie
CAPRI evaluation meeting, Apr 2019, Hinxton, United Kingdom
Communication dans un congrès hal-02394484v1
Image document

EROS: A Protein Docking Algorithm Using a Quaternion Pi-Ball Representation for Exhaustive and Accelerated Exploration of 3D Rotational Space

Maria Elisa Ruiz­ Echartea , Isaure Chauvot de Beauchêne , David Ritchie
APIL 2018 - Journée d'automne de l'Ecole Doctorale IAEM-Lorraine, Nov 2018, Nancy, France
Poster de conférence hal-01929546v1

HIV-PDI: A Protein Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 2. Examples of Use and Proof-of-Concept

Leo Ghemtio , Michel Souchet , Appolinaire Djikeng , Lionel Keminse , Patricia Kelbert , et al.
Journal of Health & Medical Informatics, 2011, 2 (1), pp.1000105. ⟨10.4172/2157-7420.1000105⟩
Article dans une revue hal-00642567v1

Recent Trends and Applications in 3D Virtual Screening

Leo Ghemtio , Violeta I. Pérez-Nueno , Vincent Leroux , Yasmine Asses , Michel Souchet , et al.
Combinatorial Chemistry and High Throughput Screening, 2012, 15 (9), pp.749-769
Article dans une revue hal-00756800v1
Image document

Using Graphics Processors to Accelerate Protein Docking Calculations

David Ritchie , Vishwesh Venkatraman , Lazaros Mavridis
HealthGrid 2010, 2010, Paris, France
Communication dans un congrès inria-00537989v1

Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection

Serena Ferraresso , Heiner Kuhl , Massimo Milan , David Ritchie , Christopher J. Secombes , et al.
Immunogenetics, 2009, 61 (11-12), pp.773-788. ⟨10.1007/s00251-009-0398-3⟩
Article dans une revue inria-00434259v1

Spatial clustering of protein binding sites for template based protein docking

Anisah Ghoorah , Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
Bioinformatics, 2011, 27 (20), pp.2820-2827. ⟨10.1093/bioinformatics/btr493⟩
Article dans une revue inria-00617921v1

Fast Protein Structure Alignment using Gaussian Overlap Scoring of Backbone Peptide Fragment Similarity

David Ritchie , Anisah Ghoorah , Lazaros Mavridis , Vishwesh Venkatraman
Bioinformatics, 2012, 28 (24), pp.3274-3281. ⟨10.1093/bioinformatics/bts618⟩
Article dans une revue hal-00756813v1
Image document

PDB-wide identification of biological assemblies from conserved quaternary structure geometry

Sucharita Dey , David Ritchie , Emmanuel D Levy
Nature Methods, 2018, 15, pp.67-72. ⟨10.1038/nmeth.4510⟩
Article dans une revue hal-01652359v1
Image document

gEMpicker: a highly parallel GPU-accelerated particle picking tool for cryo-electron microscopy

Thai Hoang , Xavier Cavin , Patrick Schultz , David Ritchie
BMC Structural Biology, 2013, 13 (1), pp.25. ⟨10.1186/1472-6807-13-25⟩
Article dans une revue hal-00955580v1

A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnip

Sandro Roselli , Alexandre Olry , Sonia Vautrin , Olivier O. Coriton , David Ritchie , et al.
Plant Journal, 2017, 89 (6), pp.1119-1132. ⟨10.1111/tpj.13450⟩
Article dans une revue hal-01531248v1

Recent Progress and Future Directions in Protein-Protein Docking

David Ritchie
Current Protein and Peptide Science, 2008, 9 (1), pp.1-15. ⟨10.2174/138920308783565741⟩
Article dans une revue inria-00434268v1
Image document

Protein-protein docking based on shape complementarity and Voronoi fingerprint

Thomas Bourquard , Jérôme Azé , Anne Poupon , David Ritchie
Journées Ouvertes Biologie Informatique Mathématiques, Jun 2011, Paris, France. pp.9-16
Communication dans un congrès inria-00613186v1

Using Consensus-Shape Clustering To Identify Promiscuous Ligands and Protein Targets and To Choose the Right Query for Shape-Based Virtual Screening

Violeta I. Pérez-Nueno , David Ritchie
Journal of Chemical Information and Modeling, 2011, 51 (6), pp.1233-1248. ⟨10.1021/ci100492r⟩
Article dans une revue inria-00617922v1
Image document

Kbdock - Searching and organising the structural space of protein-protein interactions

Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
ERCIM News, 2016, 104, pp.24-25
Article dans une revue hal-01258117v1
Image document

EROS-DOCK for Pairwise and Multi-body Protein-Protein Docking

Maria-Elisa Ruiz-Echartea , Isaure Chauvot de Beauchêne , David Ritchie
Journée MASIM2019 (Méthodes Algorithmiques pour les Structures et Interactions Macromoléculaires), Nov 2019, Paris, France
Communication dans un congrès hal-02391973v1
Image document

Accelerating Protein Docking Calculations using the ATTRACT Coarse­-Grained Force Field and 3D Rotation Maps

Maria Elisa Ruiz­ Echartea , Isaure Chauvot de Beauchêne , David Ritchie
GGMM 2017 - Groupe de Graphisme et Modélisation Moléculaire, May 2017, Reims, France
Poster de conférence hal-01927271v1
Image document

Computational Discovery of Direct Associations between GO terms and Protein Domains

Seyed Ziaeddin Alborzi , David Ritchie , Marie-Dominique Devignes
BMC Bioinformatics, 2018, 19 (Suppl 14), pp.413. ⟨10.1186/s12859-018-2380-2⟩
Article dans une revue hal-01777508v1
Image document

Microwave modulation of terahertz quantum cascade lasers : a transmission-line approach

Wilfried Maineult , Lu Ding , Pierre Gellie , Pascal Filloux , Carlo Sirtori , et al.
Applied Physics Letters, 2010, 96, pp.021108-1-3. ⟨10.1063/1.3284518⟩
Article dans une revue hal-00548728v1

Protein Docking Using Case-Based Reasoning

Anisah Ghoorah , Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
Proteins - Structure, Function and Bioinformatics, 2013, 81 (12), pp.2150-2158. ⟨10.1002/prot.24433⟩
Article dans une revue istex hal-00880341v1

Biological Profiling of Anti-HIV Agents and Insight into CCR5 Antagonist Binding Using in silico Techniques

Antonio Carrieri , Violeta I. Pérez-Nueno , Alessandra Fano , Carlo Pistone , David Ritchie , et al.
ChemMedChem, 2009, 4 (7), pp.1153-1163. ⟨10.1002/cmdc.200900101⟩
Article dans une revue istex inria-00434260v1