David Pastré

Karina Budkina, Krystel El hage, Marie-Jeanne Clément, Bénédicte Desforges, Ahmed Bouhss, et al.. YB-1 unwinds mRNA secondary structures in vitro and negatively regulates stress granule assembly in HeLa cells. Nucleic Acids Research, Oxford University Press, 2021, ⟨10.1093/nar/gkab748⟩. ⟨hal-03333572⟩

Anastasiia Samsonova, Krystel El Hage, Bénédicte Desforges, Vandana Joshi, Marie-Jeanne Clément, et al.. Lin28, a major translation reprogramming factor, gains access to YB-1-packaged mRNA through its cold-shock domain. Communications Biology, Nature Publishing Group, 2021, 4 (1), ⟨10.1038/s42003-021-01862-3⟩. ⟨hal-03176308⟩

Maria Sukhanova, Anastasia Singatulina, David Pastre, Olga Lavrik. Fused in Sarcoma (FUS) in DNA Repair: Tango with Poly(ADP-ribose) Polymerase 1 and Compartmentalisation of Damaged DNA. International Journal of Molecular Sciences, MDPI, 2020, 21 (19), pp.7020. ⟨10.3390/ijms21197020⟩. ⟨hal-02968942⟩

Dmitry Kretov, Daria Mordovkina, Irina Eliseeva, Dmitry Lyabin, Dmitry Polyakov, et al.. Inhibition of Transcription Induces Phosphorylation of YB-1 at Ser102 and Its Accumulation in the Nucleus. Cells, MDPI, 2020, 9 (1), pp.104. ⟨10.3390/cells9010104⟩. ⟨hal-02968925⟩

Konstantin Naumenko, Mariya Sukhanova, Loic Hamon, Tatyana Kurgina, Elizaveta Alemasova, et al.. Regulation of Poly(ADP-Ribose) Polymerase 1 Activity by Y-Box-Binding Protein 1. Biomolecules, MDPI, 2020, 10 (9), pp.1325. ⟨10.3390/biom10091325⟩. ⟨hal-02968966⟩

Maria Sukhanova, Loic Hamon, Mikhail Kutuzov, Vandana Joshi, Sanae Abrakhi, et al.. A Single-Molecule Atomic Force Microscopy Study of PARP1 and PARP2 Recognition of Base Excision Repair DNA Intermediates. Journal of Molecular Biology, Elsevier, 2019, 431 (15), pp.2655-2673. ⟨10.1016/j.jmb.2019.05.028⟩. ⟨hal-02165889⟩

Dmitry Kretov, Marie-Jeanne Clément, Guillaume Lambert, Dominique Durand, Dmitry Lyabin, et al.. YB-1, an abundant core mRNA-binding protein, has the capacity to form an RNA nucleoprotein filament: a structural analysis. Nucleic Acids Research, Oxford University Press, 2019, 47 (6), pp.3127-3141. ⟨10.1093/nar/gky1303⟩. ⟨hal-02114790⟩

Anastasia Singatulina, Loic Hamon, Maria Sukhanova, Bénédicte Desforges, Vandana Joshi, et al.. PARP-1 Activation Directs FUS to DNA Damage Sites to Form PARG-Reversible Compartments Enriched in Damaged DNA. Cell Reports, Elsevier Inc, 2019, 27 (6), pp.1809-1821. ⟨10.1016/j.celrep.2019.04.031⟩. ⟨hal-02167709⟩

Manel Tari, Valerie Manceau, Jean Matha Salone, Asaki Kobayashi, David Pastre, et al.. U2AF 65 assemblies drive sequence‐specific splice site recognition. EMBO Reports, EMBO Press, 2019, 20 (8), ⟨10.15252/embr.201847604⟩. ⟨hal-02178664⟩

Ioana Dobra, Serhii Pankivskyi, Anastasiia Samsonova, David Pastre, Loic Hamon. Relation Between Stress Granules and Cytoplasmic Protein Aggregates Linked to Neurodegenerative Diseases. Current Neurology and Neuroscience Reports, Current Medicine Group, 2018, 18 (12), pp.107. ⟨10.1007/s11910-018-0914-7⟩. ⟨hal-02167725⟩

Alexandre Maucuer, Bénédicte Desforges, Vandana Joshi, Mirela Boca, Dmitry Kretov, et al.. Microtubules as platforms for probing liquid–liquid phase separation in cells – application to RNA-binding proteins. Journal of Cell Science, Company of Biologists, 2018, 131 (11), pp.jcs214692. ⟨10.1242/jcs.214692⟩. ⟨hal-02166855⟩

Sanae Abrakhi, Dmitry Kretov, Bénédicte Desforges, Ioana Dobra, Ahmed Bouhss, et al.. Nanoscale Analysis Reveals the Maturation of Neurodegeneration-Associated Protein Aggregates: Grown in mRNA Granules then Released by Stress Granule Proteins. ACS Nano, American Chemical Society, 2017, 11 (7), pp.7189-7200. ⟨10.1021/acsnano.7b03071⟩. ⟨hal-02173623⟩

Louic Vermeer, Loic Hamon, Alicia Schirer, Michel Schoup, Jérémie Cosette, et al.. Vectofusin-1, a potent peptidic enhancer of viral gene transfer forms pH-dependent α-helical nanofibrils, concentrating viral particles. Acta Biomaterialia, Elsevier, 2017, 64, pp.259-268. ⟨10.1016/j.actbio.2017.10.009⟩. ⟨hal-02174366⟩

Loic Hamon, Philippe Savarin, David Pastre. Polyamine signal through gap junctions : A key regulator of proliferation and gap-junction organization in mammalian tissues ?. BioEssays, Wiley-VCH Verlag, 2016, 38 (6), pp.498-507. ⟨10.1002/bies.201500195⟩. ⟨hal-02174559⟩

Maria Sukhanova, Sanae Abrakhi, Vandana Joshi, David Pastre, Mikhail Kutuzov, et al.. Single molecule detection of PARP1 and PARP2 interaction with DNA strand breaks and their poly(ADP-ribosyl)ation using high-resolution AFM imaging. Nucleic Acids Research, Oxford University Press, 2016, 44 (6), pp.e60-e60. ⟨10.1093/nar/gkv1476⟩. ⟨hal-02183571⟩

Alix Méphon-Gaspard, Mirela Boca, Catherine Pioche-Durieu, Bénédicte Desforges, Andrea Burgo, et al.. Role of tau in the spatial organization of axonal microtubules: keeping parallel microtubules evenly distributed despite macromolecular crowding. Cellular and Molecular Life Sciences, Springer Verlag, 2016, 73 (19), pp.3745-3760. ⟨10.1007/s00018-016-2216-z⟩. ⟨hal-02183396⟩

Dmitry Kretov, Patrick Curmi, Loic Hamon, Sanae Abrakhi, Bénédicte Desforges, et al.. mRNA and DNA selection via protein multimerization: YB-1 as a case study. Nucleic Acids Research, Oxford University Press, 2015, 43 (19), pp.9457-9473. ⟨10.1093/nar/gkv822⟩. ⟨hal-02183823⟩

Mirela Boca, Dmitry Kretov, Bénédicte Desforges, Alix Méphon-Gaspard, Patrick Curmi, et al.. Probing protein interactions in living mammalian cells on a microtubule bench. Scientific Reports, Nature Publishing Group, 2015, 5, pp.17304. ⟨10.1038/srep17304⟩. ⟨hal-02272729⟩

Ouissame Bounedjah, Bénédicte Desforges, Ting-Di Wu, Catherine Pioche-Durieu, Sergio Marco, et al.. Free mRNA in excess upon polysome dissociation is a scaffold for protein multimerization to form stress granules. Nucleic Acids Research, Oxford University Press, 2014, 42 (13), pp.8678-8691. ⟨10.1093/nar/gku582⟩. ⟨hal-02292175⟩

David Pastre, Vandana Joshi, Patrick Curmi, Loic Hamon. Detection of Single DNA Molecule Hybridization on a Surface by Atomic Force Microscopy. Small, Wiley-VCH Verlag, 2013, 9 (21), pp.3630-3638. ⟨10.1002/smll.201300546⟩. ⟨hal-02291850⟩

Bénédicte Desforges, Patrick Curmi, Ouissame Bounedjah, Samir Nakib, Loic Hamon, et al.. An intercellular polyamine transfer via gap junctions regulates proliferation and response to stress in epithelial cells. Molecular Biology of the Cell, American Society for Cell Biology, 2013, 24 (10), pp.1505-1613. ⟨10.1091/mbc.E12-10-0729⟩. ⟨hal-02292186⟩

Amal Saidi Brikci-Nigassa, Marie-Jeanne Clément, Tâp Ha-Duong, Elisabeth Adjadj, Latifa Ziani, et al.. Phosphorylation Controls the Interaction of the Connexin43 C-Terminal Domain with Tubulin and Microtubules. Biochemistry, American Chemical Society, 2012, 51 (21), pp.4331-4342. ⟨10.1021/bi201806j⟩. ⟨hal-02292202⟩

Ouissame Bounedjah, Loic Hamon, Philippe Savarin, Bénédicte Desforges, Patrick Curmi, et al.. Macromolecular Crowding Regulates Assembly of mRNA Stress Granules after Osmotic Stress: NEW ROLE FOR COMPATIBLE OSMOLYTES. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2012, 287 (4), pp.2446-2458. ⟨10.1074/jbc.M111.292748⟩. ⟨hal-02292253⟩

Bénédicte Desforges, Philippe Savarin, Ouissame Bounedjah, Stephanie Delga, Loic Hamon, et al.. Gap junctions favor normal rat kidney epithelial cell adaptation to chronic hypertonicity. American Journal of Physiology - Cell Physiology, American Physiological Society, 2011, 301 (3), pp.C705-C716. ⟨10.1152/ajpcell.00128.2011⟩. ⟨hal-02292290⟩

Loic Hamon, Philippe Savarin, Patrick a. Curmi, David Pastre. Rapid Assembly and Collective Behavior of Microtubule Bundles in the Presence of Polyamines. Biophysical Journal, Biophysical Society, 2011, 101 (1), pp.205-216. ⟨10.1016/j.bpj.2011.05.022⟩. ⟨hal-02292262⟩

Julien Lefèvre, Konstantin Chernov, Vandana Joshi, Stephanie Delga, Flavio Toma, et al.. The C Terminus of Tubulin, a Versatile Partner for Cationic Molecules: BINDING OF TAU, POLYAMINES, AND CALCIUM. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2011, 286 (4), pp.3065-3078. ⟨10.1074/jbc.M110.144089⟩. ⟨hal-02292759⟩

Philippe Savarin, Aurélie Barbet, Stephanie Delga, Vandana Joshi, Loic Hamon, et al.. A Central Role for Polyamines in Microtubule Assembly in Cells: Polyamines favor MT assembly. Biochemical Journal, Portland Press, 2010, 430 (1), pp.151-159. ⟨10.1042/BJ20091811⟩. ⟨hal-00506521⟩

David Pastré, Loic Hamon, Isabelle Sorel, Eric Le Cam, Patrick Curmi, et al.. Specific DNA−Protein Interactions on Mica Investigated by Atomic Force Microscopy. Langmuir, American Chemical Society, 2010, 26 (4), pp.2618-2623. ⟨10.1021/la902727b⟩. ⟨hal-02293295⟩

Konstantin Chernov, Aurélie Barbet, Loic Hamon, Lev Ovchinnikov, Patrick Curmi, et al.. Role of Microtubules in Stress Granule Assembly. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2009, 284 (52), pp.36569-36580. ⟨10.1074/jbc.M109.042879⟩. ⟨hal-02295275⟩

Loic Hamon, Dulal Panda, Philippe Savarin, Vandana Joshi, Johann Bernhard, et al.. Mica Surface Promotes the Assembly of Cytoskeletal Proteins. Langmuir, American Chemical Society, 2009, 25 (6), pp.3331-3335. ⟨10.1021/la8035743⟩. ⟨hal-02294800⟩

Alain Mechulam, Konstantin Chernov, Elodie Mucher, Loic Hamon, Patrick Curmi, et al.. Polyamine sharing between tubulin dimers favours microtubule nucleation and elongation via facilitated diffusion. PLoS Computational Biology, Public Library of Science, 2009, 5 (1), pp.e1000255. ⟨10.1371/journal.pcbi.1000255⟩. ⟨inserm-00705780⟩

Konstantin Chernov, Alain Mechulam, Nadezhda Popova, David Pastre, Elena Nadezhdina, et al.. YB-1 promotes microtubule assembly in vitro through interaction with tubulin and microtubules. BMC Biochemistry, BioMed Central, 2008, 9 (1), pp.23. ⟨10.1186/1471-2091-9-23⟩. ⟨hal-02166798⟩

Konstantin Chernov, Patrick Curmi, Loic Hamon, Alain Mechulam, Lev Ovchinnikov, et al.. Atomic force microscopy reveals binding of mRNA to microtubules mediated by two major mRNP proteins YB-1 and PABP. FEBS Letters, Wiley, 2008, 582 (19), pp.2875-2881. ⟨10.1016/j.febslet.2008.07.019⟩. ⟨hal-02295333⟩

David Pastre, Loic Hamon, Alain Mechulam, Isabelle Sorel, Sonia Baconnais, et al.. Atomic Force Microscopy Imaging of DNA under Macromolecular Crowding Conditions. Biomacromolecules, American Chemical Society, 2007, 8 (12), pp.3712-3717. ⟨10.1021/bm700856u⟩. ⟨hal-02295397⟩

David Pastre, Olivier Piétrement, Fabrice Landousy, Loic Hamon, Isabelle Sorel, et al.. A new approach to DNA bending by polyamines and its implication in DNA condensation. European Biophysics Journal, Springer Verlag (Germany), 2006, 35 (3), pp.214-223. ⟨10.1007/s00249-005-0025-7⟩. ⟨hal-03065301⟩

David Pastre, Loic Hamon, Fabrice Landousy, Isabelle Sorel, Marie-Odile David, et al.. Anionic Polyelectrolyte Adsorption on Mica Mediated by Multivalent Cations: A Solution to DNA Imaging by Atomic Force Microscopy under High Ionic Strengths. Langmuir, American Chemical Society, 2006, 22 (15), pp.6651-6660. ⟨10.1021/la053387y⟩. ⟨hal-03065293⟩

Isabelle Sorel, Olivier Piétrement, Loic Hamon, Sonia Baconnais, Eric Le Cam, et al.. The EcoRI−DNA Complex as a Model for Investigating Protein−DNA Interactions by Atomic Force Microscopy. Biochemistry, American Chemical Society, 2006, 45 (49), pp.14675-14682. ⟨10.1021/bi060293u⟩. ⟨hal-03065288⟩

Olivier Piétrement, David Pastre, Fabrice Landousy, Marie-Odile David, Stéphane Fusil, et al.. Studying the effect of a charged surface on the interaction of bleomycin with DNA using an atomic force microscope. European Biophysics Journal, Springer Verlag (Germany), 2005, 34 (3), pp.200-207. ⟨10.1007/s00249-004-0443-y⟩. ⟨hal-03065310⟩

David Pastre, Olivier Piétrement, Alain Zozime, Eric Le Cam. Study of the DNA/ethidium bromide interactions on mica surface by atomic force microscope: Influence of the surface friction. Biopolymers, Wiley, 2005, 77 (1), pp.53-62. ⟨10.1002/bip.20185⟩. ⟨hal-03065303⟩

Olivier Piétrement, David Pastre, Stéphane Fusil, Josette Jeusset, Marie-Odile David, et al.. Reversible Binding of DNA on NiCl 2 -Treated Mica by Varying the Ionic Strength. Langmuir, American Chemical Society, 2003, 19 (7), pp.2536-2539. ⟨10.1021/la026942u⟩. ⟨hal-03065317⟩

David Pastre, Olivier Piétrement, Stéphane Fusil, Fabrice Landousy, Josette Jeusset, et al.. Adsorption of DNA to Mica Mediated by Divalent Counterions: A Theoretical and Experimental Study. Biophysical Journal, Biophysical Society, 2003, 85 (4), pp.2507-2518. ⟨10.1016/s0006-3495(03)74673-6⟩. ⟨hal-03065312⟩

Clément Demongin, Guillaume Lambert, Vandana Joshi, David Pastre, Loic Hamon. Interplay between TDP-43 and FUS in protein assemblies-Influence of mRNA on the aggregation process. Molecular Neurodegeneration and Therapeutic Approaches – Virtual Event, Jan 2021, Online, France. 2021. ⟨hal-03195903⟩

Loic Hamon, Patrick Curmi, David Pastre. High-Resolution Imaging of Microtubules and Cytoskeleton Structures by Atomic Force Microscopy. Methods in Cell Biology, pp.157-174, 2010, ⟨10.1016/S0091-679X(10)95009-7⟩. ⟨hal-02294611⟩