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Aevol : un modèle individu-centré pour l’étude de la structuration des génomes

 David P. Parsons , Carole Knibbe , Guillaume Beslon
MajecSTIC, Oct 2010, Bordeaux, France
Communication dans un congrès hal-01381560v1

From Digital Genetics to Knowledge Discovery: Perspectives in Genetic Network Understanding

 Guillaume Beslon , David P. Parsons , Jose-Maria Pena , Christophe Rigotti , Yolanda Sanchez-Dehesa
Intelligent Data Analysis, 2010, 14 (2), pp.173--191. ⟨10.3233/IDA-2010-0415⟩
Article dans une revue hal-00697024v1
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In silico experimental evolution shows that complexity can rise even in simple environments

 Guillaume Beslon , Vincent F Liard , David P. Parsons , Jonathan Rouzaud-Cornabas
ICSB 2018 - 19th International Conference on Systems Biology, Oct 2018, Lyon, France. pp.1
Poster de conférence hal-01939365v1

Environmental assessment of urban mobility: Combining life cycle assessment with land-use and transport interaction modelling—Application to Lyon (France)

 Cyrille François , Natacha Gondran , Jean-Pierre Nicolas , David Parsons
Ecological Indicators, 2017, 72, pp.Pages 597-604. ⟨10.1016/j.ecolind.2016.07.014⟩
Article dans une revue emse-01368062v1

An alife game to teach evolution of antibiotic resistance

 Guillaume Beslon , Bérénice Batut , David P. Parsons , Dominique Schneider , Carole Knibbe
ECAL - 12th European Conference on Artificial Life - 2013, Sep 2013, Taormina, Italy. pp.43-50
Communication dans un congrès hal-00849345v1

Scaling Laws in Digital Organisms

 Guillaume Beslon , Yolanda Sanchez-Dehesa , David P. Parsons , Jose Maria Pena , Carole Knibbe
Proc. Information Processing in Cells and Tissues IPCAT'09, Apr 2009, Ascona, Switzerland. pp.111-114
Communication dans un congrès hal-01437632v1
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Data Standards for Artificial Life Software

 Alexander Lalejini , Emily Dolson , Clifford Bohm , Austin J Ferguson , David P. Parsons , et al.
ALIFE 2019 - Conference on Artificial Life, Jul 2019, Newcastle, United Kingdom. pp.507-514, ⟨10.1162/isal_a_00213⟩
Communication dans un congrès hal-02285716v1
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The complexity ratchet: stronger than selection

 Vincent F Liard , Jonathan Rouzaud-Cornabas , David P. Parsons , Guillaume Beslon
Beacon congress 2018, Aug 2018, east-lansing, United States. pp.1
Poster de conférence hal-01938802v1
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Modelling Evolution of Regulatory Networks in Artificial Bacteria

 Yolanda Sanchez-Dehesa , David P. Parsons , Jose Maria Pena , Guillaume Beslon
Mathematical Modelling of Natural Phenomena, 2008, 2, 3, pp.27-66. ⟨10.1051/mmnp:2008054⟩
Article dans une revue hal-01500393v1
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The Complexity Ratchet: Stronger than selection, weaker than robustness

 Vincent F Liard , David P. Parsons , Jonathan Rouzaud-Cornabas , Guillaume Beslon
ALIFE 2018 - the 2018 conference on artificial Life, Jul 2018, Tokyo, Japan. pp.1-8, ⟨10.1162/isal_a_00051⟩
Communication dans un congrès hal-01882628v1

Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.

 David P. Parsons , Carole Knibbe , Guillaume Beslon
Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.622--629
Communication dans un congrès hal-00696902v1

Scaling Laws in Bacterial Genomes: A Side-Effect of Selection of Mutational Robustness

 Guillaume Beslon , David P. Parsons , Yolanda Sanchez-Dehesa , Jose-Maria Peña , Carole Knibbe
BioSystems, 2010, 102 (1), pp.32-40. ⟨10.1016/j.biosystems.2010.07.009⟩
Article dans une revue inria-00593709v1
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Of Evolution, Systems and Complexity

 Guillaume Beslon , Vincent F Liard , David P. Parsons , Jonathan Rouzaud-Cornabas
Evolutionary Systems Biology II, 2021, ⟨10.1007/978-3-030-71737-7_1⟩
Chapitre d'ouvrage hal-03136122v1
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In vitro, in vivo and spectroscopic assessment of lead exposure reduction via ingestion and inhalation pathways using phosphate and iron amendments

 Farzana Kastury , Euan Smith , Emmanuel Doelsch , Enzo Lombi , Martin Donnelley , et al.
Environmental Science and Technology, 2019, 53 (17), pp.10329-10341. ⟨10.1021/acs.est.9b02448⟩
Article dans une revue cirad-02309095v2
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In silico experimental evolution: a tool to test evolutionary scenarios

 Bérénice Batut , David P. Parsons , Stephan Fischer , Guillaume Beslon , Carole Knibbe
BMC Bioinformatics, 2013, 14 (Suppl 15), pp.S11
Article dans une revue hal-00873232v1
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Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

 Nicolas Comte , Benoît Morel , Damir Hasic , Laurent Guéguen , Bastien Boussau , et al.
Bioinformatics, 2020, 36 (18), pp.4822-4824. ⟨10.1093/bioinformatics/btaa615⟩
Article dans une revue hal-02883386v1

What happened to my genes? Insights on gene family dynamics from digital genetics experiments

 Carole Knibbe , David P. Parsons
ALIFE 14 (14th Intl. Conf. on the Synthesis and Simulation of Living Systems), Jul 2014, New York, NY, United States. pp.33-40, ⟨10.7551/978-0-262-32621-6-ch006⟩
Communication dans un congrès hal-01093110v1

Parsimonious modeling of scaling laws in genomes and transcriptomes

 Carole Knibbe , David P. Parsons , Guillaume Beslon
Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.414--415
Communication dans un congrès hal-00696870v1

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

 Manolo Gouy , Eric Tannier , Nicolas Comte , David Parsons
Multiple Sequence Alignment, 2231, Humana, pp.241-260, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1036-7_15⟩
Chapitre d'ouvrage hal-03065564v1
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Understanding and monitoring the evolution of the Covid-19 epidemic from medical emergency calls: the example of the Paris area

 Stéphane Gaubert , Marianne Akian , Xavier Allamigeon , Marin Boyet , Baptiste Colin , et al.
Comptes Rendus. Mathématique, 2020, 358 (7), pp.843-875. ⟨10.5802/crmath.99⟩
Article dans une revue hal-02648075v2

New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq data

 Alice Julien-Laferriere , Gustavo Sacomoto , Rayan Chikhi , Erwan Scaon , David P. Parsons , et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2013, Toulouse, France
Communication dans un congrès hal-02069363v1
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How to reduce a genome? ALife as a tool to teach the scientific method to school pupils

 Quentin Carde , Marco Foley , Carole Knibbe , David P. Parsons , Jonathan Rouzaud-Cornabas , et al.
ALIFE 2019 - Conference on Artificial Life, Jul 2019, Newcastle, United Kingdom. pp.497-504, ⟨10.1162/isal_a_00211⟩
Communication dans un congrès hal-02285718v1

Influence of the rearrangement rates on the organization of genome transcription

 David P. Parsons , Carole Knibbe , Guillaume Beslon
JOBIM, Jun 2010, Montpellier, France
Communication dans un congrès hal-01381518v1

The Paradoxical Effects of Allelic Recombination on Fitness

 David P. Parsons , Carole Knibbe , Guillaume Beslon
Proceedings of Artificial Life XIII, Jul 2012, East Lansing, France. pp.536--537
Communication dans un congrès hal-00759142v1

Effects of public good properties on the evolution of cooperation

 Dusan Misevic , Antoine Frenoy , David P. Parsons , Francois Taddei
Proceedings of Artificial Life XIII, Jul 2012, East Lansing, United States. pp.218--225
Communication dans un congrès hal-00759140v1

Evolution of scaling laws in artificial regulation networks

 David P. Parsons , Guillaume Beslon , Carole Knibbe , Yolanda Sanchez-Dehesa , Jose Maria Pena
Integrative Post-Genomics, Nov 2009, Lyon, France. pp.22-22
Communication dans un congrès hal-01437814v1

Importance of the rearrangement rates on the organization of transcription.

 David P. Parsons , Carole Knibbe , Guillaume Beslon
Proceedings of Artificial Life XII, Aug 2010, Odense, Denmark. pp.479--486
Communication dans un congrès hal-00697043v1

Influence of the rearrangement rates on the organization of genome transcription

 David P. Parsons , Carole Knibbe , Guillaume Beslon
Integrative Post-Genomics, Nov 2010, Lyon, France
Communication dans un congrès hal-01381618v1
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The complexity ratchet: Stronger than selection, stronger than evolvability, weaker than robustness

 Vincent F Liard , David P. Parsons , Jonathan Rouzaud-Cornabas , Guillaume Beslon
Artificial Life, 2020, 26 (1), pp.38-57. ⟨10.1162/artl_a_00312⟩
Article dans une revue hal-03136077v1
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