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David Causeur

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Identifiants chercheurs
  • IdHAL david-causeur
  • ORCID 0000-0001-6910-9440
  • Google Scholar : https://scholar.google.com/citations?user=kCws61IAAAAJ&hl=fr

Présentation

Research topics =============== My research interests are in statistical methodology for various issues motivated by biological applications. More particularly, the focus of my recent papers is on the handling of dependence in high-dimensional statistical inference. **Statistical genomics** Dependence within high-dimensional gene expression profiles generates a strong instability of gene selection in large scale significance analysis. A proper handling of this dependence by latent factor models or more general whitening techniques improves stability of multiple testing procedures and power (see for example Friguet *et al*, 2009 \[JASA\], Friguet and Causeur, 2010 \[CSDA\], Causeur *et al*, 2011 \[JSS\], Hornung *et al*, 2016 \[BMC Bioinf.\], Hornung *et al*, 2017 \[Bioinf.\], Hébert *et al*, 2021 \[CSDA\]). **Functional data analysis** Functional data are discretized observations of curves. Such data are generated by various technologies such as spectroscopy or electroencephalography (EEG). More and more study designs, such as Event-Related Potentials studies in neuroscience, aim at assessing the relationship between functional data and experimental covariates. Both for signal detection (global testing) and signal identification (search for significant intervals), dependence handling strategies can be designed to be efficient for a given pattern of association signal (see for example Causeur *et al*, 2012 \[BRM\], Sheu *et al*, 2016 \[AoAS\], Causeur *et al*, 2020 \[Biometrics\]). **High-dimensional regression and classification modeling** Both in genomic and functional data analysis, estimation of regression and classification models has to deal with a possibly strong dependence within high-dimensional profiles of explanatory variables. Whitening procedures can help stabilizing model selection methods and improve prediction performance (see for example Perthame *et al*, 2015 \[StatCo\], Hébert *et al*, 2021 \[Under revision\]). **Biostatistics** I am involved in various research projects with a diversity of partners in biology, recently for multi-omic data integration issues (see Gondret *et al*., 2017 \[BMC Gen.\], Désert *et al*., 2018 \[BMC Gen.\]), peptidomics (see Suwareh *et al*., 2021 \[Food Ch.\]), electromyographic data analysis (see Comfort *et al*., 2021 \[PACA\]), etc.

Publications

Adaptive Handling of Dependence in High-Dimensional Regression Modeling

Florian Hébert , David Causeur , Mathieu Emily
Journal of Computational and Graphical Statistics, 2023, 32 (1), pp.213-225. ⟨10.1080/10618600.2022.2076687⟩
Article dans une revue hal-04047707v1
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Prediction of fatty acids composition in the rainbow trout Oncorhynchus mykiss by using Raman micro-spectroscopy

E. Prado , Christophe Eklouh-Molinier , Florian Enez , David Causeur , C. Blay
Analytica Chimica Acta, 2022, 1191, ⟨10.1016/j.aca.2021.339212⟩
Article dans une revue hal-03445774v1
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HYPER-SCAN - Développer des technologies innovantes de tri des pièces de découpe de porc

Gérard Daumas , Antoine Vautier , Ronan Le Page , Mathieu Monziols , Thierry Lhommeau
Innovations Agronomiques, 2022, 85, pp.185-197. ⟨10.17180/ciag-2022-vol85-art14⟩
Article dans une revue hal-03592219v1
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Omnibus testing approach for gene‐based gene‐gene interaction

Florian Hébert , David Causeur , Mathieu Emily
Statistics in Medicine, 2022, 41 (15), ⟨10.1002/sim.9389⟩
Article dans une revue hal-03629259v1
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An adaptive decorrelation procedure for signal detection

Florian Hébert , David Causeur , Mathieu Emily
Computational Statistics and Data Analysis, 2021, 153, pp.107082. ⟨10.1016/j.csda.2020.107082⟩
Article dans une revue hal-02938672v1
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Statistical modeling of in vitro pepsin specificity

Ousmane Suwareh , David Causeur , Julien Jardin , Valérie Briard-Bion , Steven Le Feunteun
Food Chemistry, 2021, 362, pp.130098. ⟨10.1016/j.foodchem.2021.130098⟩
Article dans une revue hal-03248112v1

Implicit responses in the judgment of attractiveness in faces with differing levels of makeup.

William Edgar Comfort , Bianca Nunes de Andrade , Tanja Wingenbach , D. Causeur , Paulo Sérgio Boggio
Psychology of Aesthetics, Creativity, and the Arts, 2021, 17 (1), pp.29-42. ⟨10.1037/aca0000408⟩
Article dans une revue hal-03403732v1
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Genetic architecture and genomic selection of fatty acid composition predicted by Raman spectroscopy in rainbow trout

Carole Blay , Pierrick Haffray , Jonathan D’ambrosio , Enora Prado , Nicolas Dechamp
BMC Genomics, 2021, 22 (1), pp.788. ⟨10.1186/s12864-021-08062-7⟩
Article dans une revue hal-03432316v1

A functional generalized F‐test for signal detection with applications to event‐related potentials significance analysis

David Causeur , Ching‐fan Sheu , Emeline Perthame , Flavia Rufini
Biometrics, 2020, 76 (1), pp.246-256. ⟨10.1111/biom.13118⟩
Article dans une revue hal-02355057v1

Organic Carbon and Total Iron Effect on Soil Vis-SWNIR Spectraand Quantification of Their Contents Using PLS R Models

H. Aïchi , Y. Fouad , D. Causeur , Christian Walter
Communications in Soil Science and Plant Analysis, 2020, 51 (9), pp.1253-1267. ⟨10.1080/00103624.2020.1751187⟩
Article dans une revue hal-02970582v1
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Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis

Colette Désert , Elisabeth Baéza , Meziane Aite , Morgane Boutin , Aurélie Le Cam
BMC Genomics, 2018, 19 (1), pp.1-19. ⟨10.1186/s12864-018-4520-5⟩
Article dans une revue hal-01727161v1
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A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret , Annie Vincent , Magalie Houée-Bigot , Anne Siegel , Sandrine Lagarrigue
BMC Genomics, 2017, 18 (1), pp.244. ⟨10.1186/s12864-017-3639-0⟩
Article dans une revue hal-01494107v1

Improving cross-study prediction through addon batch effect adjustment or addon normalization

Roman Hornung , David Causeur , Christoph Bernau , Anne-Laure Boulesteix
Bioinformatics, 2017, 33 (3), pp.397-404. ⟨10.1093/bioinformatics/btw650⟩
Article dans une revue hal-01518454v1
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Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location

Florence Gondret , Annie Vincent , Magalie Houée-Bigot , Anne Siegel , Sandrine Lagarrigue
BMC Genomics, 2016, 17 (1), pp.120. ⟨10.1186/s12864-016-2438-3⟩
Article dans une revue hal-01286555v1

Sparse factor model for co-expression networks with an application using prior biological knowledge

Yuna Blum , Magalie Houée-Bigot , David Causeur
Statistical Applications in Genetics and Molecular Biology, 2016, 15 (3), pp.253-272. ⟨10.1515/sagmb-2015-0002⟩
Article dans une revue hal-01340542v1

Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment

Roman Hornung , Anne-Laure Boulesteix , David Causeur
BMC Bioinformatics, 2016, 17 (1), ⟨10.1186/s12859-015-0870-z⟩
Article dans une revue hal-01286550v1
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Stability of feature selection in classification issues for high-dimensional correlated data

Emeline Perthame , Chloé Friguet , David Causeur
Statistics and Computing, 2016, 26 (4), pp.783-796. ⟨10.1007/s11222-015-9569-2⟩
Article dans une revue hal-01256508v1

Investigating the impact of egg white gel structure on peptide kinetics profile during in vitro digestion

Kéra Nyemb-Diop , David Causeur , Julien Jardin , Valérie Briard-Bion , Catherine Guérin-Dubiard
Food Research International, 2016, 88, pp.302 - 309. ⟨10.1016/j.foodres.2016.01.004⟩
Article dans une revue hal-01395012v1
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Accounting for time dependence in large-scale multiple testing of event-related potential data

Ching-Fan Sheu , Emeline Perthame , Yuh-Shiow Lee , David Causeur
Annals of Applied Statistics, 2016, 10 (1), pp.219-245. ⟨10.1214/15-AOAS888⟩
Article dans une revue hal-01338701v1

Preserving relationships between variables with MIVQUE based imputation for missing survey data

Brigitte Gelein , David Haziza , David Causeur
Journal of Multivariate Analysis, 2014, 131, pp.197-208. ⟨10.1016/j.jmva.2014.06.020⟩
Article dans une revue hal-01111483v1

Investigating the impact of ovalbumin aggregate morphology on in vitro ovalbumin digestion using label-free quantitative peptidomics and multivariate data analysis

Kéra Nyemb , Julien Jardin , David Causeur , Catherine Guérin-Dubiard , Didier Dupont
Food Research International, 2014, 63, pp.192-202. ⟨10.1016/j.foodres.2014.03⟩
Article dans une revue hal-01189975v1

A factor-adjusted multiple testing procedure for ERP data analysis

David Causeur , Mc. Chu , S. Hsieh , C.F. Sheu
Behavior Research Methods, 2012, 44 (3), pp.635-643. ⟨10.3758/s13428-012-0230-0⟩
Article dans une revue hal-00841113v1

Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows

Núria Mach , Yuna Blum , A. Bannink , David Causeur , M. Houee-Bigot
Journal of Dairy Science, 2012, 95 (9), pp.4989-5000. ⟨10.3168/jds.2012-5348⟩
Article dans une revue hal-00841015v1
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Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

Yuna Blum , Guillaume Le Mignon , David Causeur , Olivier Filangi , Colette Désert
BMC Genomics, 2011, 12 (november), pp.8. ⟨10.1186/1471-2164-12-567⟩
Article dans une revue hal-00730144v1

Estimation of the proportion of true null hypotheses in high-dimensional data under dependence

Chloé Friguet , David Causeur
Computational Statistics and Data Analysis, 2011, 55 (9), pp.2665-2676. ⟨10.1016/j.csda.2011.03.016⟩
Article dans une revue hal-00609085v1
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Factor Analysis for Multiple Testing (FAMT): An R Package for Large-Scale Significance Testing under Dependence

David Causeur , Chloé Friguet , Magali Houee-Bigot , Maela Kloareg
Journal of Statistical Software, 2011, 40 (14), pp.19
Article dans une revue hal-00730155v1

Exact Distribution of the Regression Estimator in Double Sampling

D. Causeur
Statistics, 2010, 32 (4), pp.297-315. ⟨10.1080/02331889908802671⟩
Article dans une revue hal-03403925v1
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A factor model to analyze heterogeneity in gene expression.

Yuna Blum , Guillaume Le Mignon , Sandrine Lagarrigue , David Causeur
BMC Bioinformatics, 2010, 11 (368), pp.368. ⟨10.1186/1471-2105-11-368⟩
Article dans une revue hal-00729426v1

Aggressiveness of eight Venturia inaequalis isolates virulent or avirulent to the major resistance gene Rvi6 on a non-Rvi6 apple cultivar

Valérie Caffier , Frederique Didelot , Besnik Pumo , D. Causeur , Charles Eric Durel
Plant Pathology, 2010, 59 (6), pp.1072-1080. ⟨10.1111/j.1365-3059.2010.02345.x⟩
Article dans une revue hal-02659116v1

A factor model approach to multiple testing under dependence

Chloé Friguet , Maela Kloareg , David Causeur
Journal of the American Statistical Association, 2009, 104 (488), pp.1406-1415. ⟨10.1198/jasa.2009.tm08332⟩
Article dans une revue hal-00458049v1
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A simple and rapid method for the disruption of Staphylococcus aureus, optimized for quantitative reverse transcriptase applications: Application for the examination of Camembert cheese

Wilfried Ablain , Sylvie Hallier Soulier , David Causeur , Michel Gautier , Florence Baron
Dairy Science & Technology, 2009, 89 (1), pp.69-81
Article dans une revue hal-00895694v1

Control of the FWER in multiple testing under dependence

David Causeur , Maela Kloareg , Chloé Friguet
Communications in Statistics - Theory and Methods, 2009, 38 (16 et 17), pp.2733 - 2747. ⟨10.1080/03610910902936281⟩
Article dans une revue hal-00458161v1

Double-sampling designs to reduce the non-discoveryrate. Application to microarray data

Maela Kloareg , David Causeur
Journal of Data Science, 2009, 7 (2), pp.219-234
Article dans une revue hal-00459271v1

Hierarchy of factors affecting behavioural signs used for oestrus detection of Holstein and Normande dairy cows in a seasonal calving system.

E. Cutullic , Luc Delaby , David Causeur , G. Michel , Catherine Disenhaus
Animal Reproduction Science, 2009, 113 (1-4), pp.22-37. ⟨10.1016/j.anireprosci.2008.07.001⟩
Article dans une revue hal-00730123v1
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A simple and rapid method for the disruption of Staphylococcus aureus, optimized for quantitative reverse transcriptase applications: Application for the examination of Camembert cheese

Wilfried Ablain , Sylvie Hallier Soulier , David Causeur , Florence Baron
Dairy Science & Technology, 2009, 89, pp.69-81. ⟨10.1051/dst/2008034⟩
Article dans une revue hal-01454051v1

A simple and rapid method for the disruption of Staphylococcus aureus, optimized for quantitative reverse transcriptase applications : Application for the examination of Camembert cheese

Wilfried Ablain , Sylvie Hallier Soulier , David Causeur , Michel Gautier , Florence Baron
Dairy Science & Technology, 2009, 89 (1), p.69
Article dans une revue hal-00458180v1
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Power of double-sampling tests for General Linear Hypotheses

David Causeur , François Husson
Statistics A Journal of Theoretical and Applied Statistics, 2008, 42 (2), pp.115-125. ⟨10.1080/02331880701597552⟩
Article dans une revue hal-00466877v1

Power of double-sampling tests for general linear hypotheses

David Causeur , François Husson
Statistics, 2008, 42 (2), pp.115-125. ⟨10.1080/02331880701597552⟩
Article dans une revue hal-00360386v1

MIVQUE and maximum likelihood estimation for multivariate linear models with incomplete observations

David Causeur
Sankhya: The Indian Journal of Statistics, 2006, 68 (3), pp.408-434
Article dans une revue hal-00459325v1

A 2-dimensional extension of the Bradley–Terry model for paired comparisons

D. Causeur , François Husson
Journal of Statistical Planning and Inference, 2005, 135 (2), pp.245-259. ⟨10.1016/j.jspi.2004.05.008⟩
Article dans une revue hal-03403895v1

Optimal sampling from concomitant variables for regression problems

D. Causeur
Journal of Statistical Planning and Inference, 2005, 128 (1), pp.289-301. ⟨10.1016/j.jspi.2003.11.003⟩
Article dans une revue hal-03403783v1

A two-way analysis of variance model with positive definite interaction for homologous factors

D. Causeur , Thierry Dhorne , Arlette Antoni
Journal of Multivariate Analysis, 2005, 95 (2), pp.431-448. ⟨10.1016/j.jmva.2004.07.006⟩
Article dans une revue hal-03403807v1

A 2-dimensional extension of the Bradley–Terry model for paired comparisons

François Husson , D. Causeur
Journal of Statistical Planning and Inference, 2005, 135 (2), pp.245-259. ⟨10.1016/j.jspi.2004.05.008⟩
Article dans une revue hal-03391761v1

Functional Approach for the analysis of time intensity curves using B-splines

Stéphanie Ledauphin , Evelyne Vigneau , David Causeur
Journal of Sensory Studies, 2005, 20 (4), pp.285-300
Article dans une revue hal-02672510v1

Linear regression models under conditional independence restrictions

David Causeur , Thierry Dhorne
Scandinavian Journal of Statistics, 2003
Article dans une revue hal-03403908v1

HMI ASPECTS OF THE USABILITY OF INTERNET SERVICES WITH AN IN-CAR TERMINAL ON A DRIVING SIMULATOR

J-F. Kamp , J-F. Forzy , C. Marin-Lamellet , D. Causeur
IATSS Research - Journal of International Association of Traffic and Safety Sciences, 2001, 25 (2), pp.29-39. ⟨10.1016/s0386-1112(14)60068-6⟩
Article dans une revue hal-03403917v1

Plan d'échantillonnage en plusieurs phases pour la réduction des coûts expérimentaux en régression linéaire

David Causeur
Revue de Statistique Appliquée, 1998
Article dans une revue hal-03403945v1

Finite Sample Properties of a Multivariate Extension of Double Regression

D. Causeur , Thierry Dhorne
Biometrics, 1998, 54 (4), pp.1591. ⟨10.2307/2533683⟩
Article dans une revue hal-03403953v1

Prédiction de la composition chimique des truies reproductrices à partir du poids vif et de l'épaisseur de lard dorsal : Application à la définition des besoins énergétiques

Jean-Yves Dourmad , M. Etienne , Jean Noblet , D. Causeur
Journees de la Recherche Porcine en France, 1997, 29, pp.255-262
Article dans une revue hal-02692331v1

Statistical modelling of in vitro pepsinolysis using peptidomic data

Ousmane Suwareh , David Causeur , Francoise Nau
Journées Scientifiques de l'ED EGAAL 2021, L’école doctorale « Écologie, Géosciences, Agronomie, ALimentation, Jun 2021, Rennes, France
Communication dans un congrès hal-03318607v1

Statistical modeling of in vitro pepsin specificity

Ousmane Suwareh , David Causeur , Julien Jardin , Valérie Briard-Bion , Steven Le Feunteun
Virtual International Conference on Food Digestion, Cost Infogest, May 2021, Virtual International Conference on Food Digestion (#VICFD2021) on 6-7th May 2021., France
Communication dans un congrès hal-03220832v1

Prediction of fatty acids in the rainbow trout Oncorhynchus mykiss: a Raman scattering spectroscopy approach

E. Prado , Christophe Eklouh-Molinier , Florian Enez , C. Blay , Mathilde Dupont-Nivet
22. International Conference on Transparent Optical Networks (ICTON), Jul 2020, Bari, Italy. pp.1-4, ⟨10.1109/ICTON51198.2020.9203514⟩
Communication dans un congrès hal-02948337v1
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Décorrélation adaptative pour la prédiction en grande dimension

Florian Hébert , Mathieu Emily , David Causeur
51es Journées de Statistique 2019, Société Française de Statistique, Jun 2019, Nancy, France
Communication dans un congrès hal-02361735v1
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Identification of the physicochemical characteristics of peptides that influence their hydrolysis by pepsin

Ousmane Suwareh , Francoise Nau , David Causeur
Workshop Infogest statistical treatment of peptidomic data, Institut National de Recherche Agronomique (INRA). UMR UMR INRA / AgroCampus Rennes : Science et Technologie du Lait et de l'?uf (1253)., Dec 2019, Lyon, France
Communication dans un congrès hal-02737436v1
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PROPENSITY WEIGHTING FOR SURVEY NONRESPONSE THROUGH MACHINE LEARNING

Brigitte Gelein , David Haziza , David Causeur
13es Journées de méthodologie statistique de l'Insee (JMS), Jun 2018, Paris, France
Communication dans un congrès hal-02076739v1

Identification des fonctions biologiques, spécifiques d’un tissu ou partagées entre tissus, associées aux différences d’efficacité alimentaire chez le porc en croissance

Florence Gondret , Annie Vincent , Magalie Houee , Anne Siegel , Sandrine Lagarrigue
49. Journées de la Recherche Porcine, Jan 2017, Paris, France. pp.13-18
Communication dans un congrès hal-01602699v1
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Variable selection for correlated data in high dimension using decorrelation methods

Emeline Perthame , David Causeur , Ching-Fan Sheu , Chloé Friguet
Statlearn: Challenging problems in statistical learning, Apr 2016, Vannes, France
Communication dans un congrès hal-01310571v1

Data integration

Florence Gondret , Isabelle Louveau , Magalie Houee , David Causeur , Anne Siegel
Meeting INRA-ISU, Mar 2015, Ames, United States. 11 diapositives
Communication dans un congrès hal-01210940v1

ERP: an R package for Event-Related Potentials data analysis

Emeline Perthame , David Causeur , Ching-Fan Sheu
useR!2014, UCLA Statistics Department; Foundation for Open Access Statistics; Los Angels R user group, Jun 2014, Los Angeles, United States
Communication dans un congrès hal-01167321v1

Dealing with long-time range dependence in large-scale multiple testing of Event-Related Potentials data

Emeline Perthame , Ching-Fan Sheu , David Causeur , Yuh-Shiow Lee
46e Journées de Statistique, Société Française de Statistique, Jun 2014, Rennes, France
Communication dans un congrès hal-01167092v1
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Sparse factor model for gene co-expression networks

Anne Blum , Magalie Houee , Aldons J. Lusis , Sandrine Lagarrigue , David Causeur
BioNetVisA Workshop, Sep 2014, Strasbourg, France
Communication dans un congrès hal-01210988v1

FADA: an R package for variable selection in supervised classification of strongly dependent data

Emeline Perthame , Chloé Friguet , David Causeur
useR!2014, UCLA Statistics Department; Foundation for Open Access Statistics; Los Angels R user group, Jun 2014, Los Angeles, United States
Communication dans un congrès hal-01167304v1
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Stabilité de la sélection de variables pour la classification de données en grande dimension

Emeline Perthame , Chloé Friguet , David Causeur
45 èmes Journées de Statistique, May 2013, Toulouse, France
Communication dans un congrès hal-00913047v1

Generalized linear factor modeling for dependence between SNPs in GWAS

Mathieu Emily , David Causeur
Statistical fort Genomic Data (SMPGD'13), Jan 2013, Amsterdam, Netherlands
Communication dans un congrès hal-01451794v1
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Inferring gene networks using a sparse factor model approach, Statistical Learning and Data Science

Yuna Blum , Magali Houée , Chloé Friguet , Sandrine Lagarrigue , David Causeur
Learning and Data Science, May 2012, Florence (IT), Italy
Communication dans un congrès hal-00841017v1

Sparse factor models for gene co-expression networks.

Yuna Blum , M. Houée , David Causeur
Séminaire de Biostatistiques, Dec 2012, Toulouse (FR), France. non paginé
Communication dans un congrès hal-00841019v1

Genetic analysis of a complex trait using transcriptomic data: contribution of gene regulatory network modeling

Yuna Blum , Magalie Houée , Chloé Friguet , Sandrine Lagarrigue , David Causeur
XX. Conference of the plant & animal genome (PAG), Jan 2012, San Diego, United States. 1 p
Communication dans un congrès hal-00841103v1

Inférence de réseaux de co-expression génique

Yuna Blum , M. Houée , David Causeur
10ème Journée Biogenouest, Nov 2012, Rennes (FR), France. non paginé
Communication dans un congrès hal-00841018v1
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Inferring gene networks using a sparse factor model approach

Anne Blum , Magalie Houee , Chloé Friguet , Sandrine Lagarrigue , David Causeur
Statistical learning and data science, May 2012, Florence, Italy. 12 p
Communication dans un congrès hal-02806777v1

Selection stability for supervised classification of heterogeneous data.

David Causeur
Selection stability for supervised classification of heterogeneous data., Oct 2011, Rennes (FR), France. non paginé
Communication dans un congrès hal-00842502v1
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Integrating QTL controlling fatness, lipid metabolites and gene expressions to genetically dissect the adiposity complex trait in a meat chicken cross

Yuna Blum , Olivier O. Demeure , Colette Désert , Hervé Guillou , J Bertrand-Michel
62. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2011, Stavanger, Norway
Communication dans un congrès hal-02748764v1

Effect of the gene diacylglycerol-O-transferase 1 (DGAT1) polymorphism on the global expression pattern of genes in the mammary gland tissue of dairy cows

Núria Mach , Yuna Blum , David Causeur , Sandrine Lagarrigue , M. A. Smits
62. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2011, Stavanger, Norway
Communication dans un congrès hal-02747109v1

Integrating biological knowledge in gene expression data analysis

David Causeur , Sébastien Lê
ISI 2011, Aug 2011, Dublin (IE), Ireland. non paginé
Communication dans un congrès hal-00842500v1
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Large-scale significance testing of high thoroughput Data with FAMT

Magalie Houée-Bigot , Chloé Friguet , Sandrine Lagarrigue , Anne Blum , David Causeur
14. Conference of the Applied Stochastic Models and Data Analysis International Society, Jun 2011, Rome, Italy
Communication dans un congrès hal-02746752v1
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Transcriptome profiling reveals interaction between two QTL for fatness in chicken

Yuna Blum , Guillaume Le Mignon , Frederique Pitel , David Causeur , Olivier Demeure
15th European workshop on QTL mapping and marker assisted selection (QTLMAS), May 2011, Rennes (FR), France. 1 p
Communication dans un congrès hal-00841016v1

Feature selection stability in high-dimensional heterogeneous data.

David Causeur
Cladag 2011, Sep 2011, Pavia (IT), Italy. non paginé
Communication dans un congrès hal-00842499v1

A factor model to analyze heterogeneity in gene expression in a context of QTL mapping

Yuna Blum , Sandrine Lagarrigue , David Causeur
8th workshop " Statistical Methods for Post-Genomic Data ", Jan 2010, Marseille, France
Communication dans un congrès hal-00459362v1
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Inférence sur réseaux géniques par Analyse en Facteurs

Yuna Blum , Chloé Friguet , Sandrine Lagarrigue , David Causeur
42èmes Journées de Statistique, 2010, Marseille, France, France
Communication dans un congrès inria-00494802v1

Estimation conditionnelle de la proportion d'hypotheses nulles en grande dimension

Chloé Friguet , David Causeur
41èmes Journées de Statistiques, Société Française de Statistiques, May 2009, Bordeaux, France
Communication dans un congrès hal-00461645v1

Factor Analysis for Multiple Testing (FAMT) : an R package for simultaneous tests under dependence in high-dimensional data

Maela Kloareg , Chloé Friguet , David Causeur
UseR!2009. Agrocampus, Jul 2009, Rennes, France
Communication dans un congrès hal-00461700v1
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Estimation conditionnelle de la proportion d'hypothèses nulles en grande dimension

Chloé Friguet , David Causeur
41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France
Communication dans un congrès inria-00386591v1

Estimation of the proportion of null p-values among dependent tests

Chloé Friguet , David Causeur
Petersburg Workshop on Simulation, Jun 2009, St Petersburg, Russia
Communication dans un congrès hal-00461648v1

Factor Analysis for Multiple Testing: a general approach for differential analysis of genome-scale dependent data

Chloé Friguet , Maela Kloareg , David Causeur
Workshop on Statistical advances in Genome-scale Data Analysis, May 2009, Ascona, Switzerland
Communication dans un congrès hal-00461632v1

Conditional Fdr estimation based on a factor analytic approach of multiple testing

David Causeur , Chloé Friguet
Workshop on Simulation, Jun 2009, St Petersburg, Russia
Communication dans un congrès hal-00461697v1

Factor Analysis for Multiple Testing: an R-package to analyze a genome-scale dataset

Maela Kloareg , Chloé Friguet , David Causeur
Workshop « Statistical advances in Genome-scale Data Analysis », May 2009, Ascona, Switzerland
Communication dans un congrès hal-00459370v1

Multiple tests for high-throughput data assuming a factor modeling of dependence

Chloé Friguet , David Causeur
40th Journées de Statistiques (Société Française de Statistiques) / joint with Société Statistique, May 2008, Ottawa, Canada
Communication dans un congrès hal-00461705v1

Approche conditionnelle des tests multiples pour données biologiques à haut-débit

Chloé Friguet , David Causeur
7ème Journée Jeunes Chercheurs (Société Française de Biométrie). INSERM, Dec 2008, Villejuif, France
Communication dans un congrès hal-00461708v1

Accounting for a factor structure in high-dimensional data to improve multiple testing procedures

Chloé Friguet , David Causeur
6th workshop on Statistical Methods for Post-Genomic Data. Agrocampus, Feb 2008, Rennes, France
Communication dans un congrès hal-00461702v1

Improving supervised classification for high dimensional data by adding external information. Application to microarray data

Maela Kloareg , David Causeur
Annual conference of the Société française de Statistique (SFdS) and the Statistical Society of Canada (SSC), May 2008, Ottawa, Canada
Communication dans un congrès hal-00461717v1

Impact of Dependence on the Stability of Model Selection in Supervised Classification for High-Throughput Data

David Causeur , Maela Kloareg , Chloé Friguet
International Indian Statistical Association (IISA) Conference on Frontiers of Probability and Statistical Science, May 2008, Storrs, United States
Communication dans un congrès hal-00461704v1

Reducing the Non-Discovery Rate by use of auxiliary variables in microarray experiments

Maela Kloareg , David Causeur , M. Damon
5th Workshop: Statistical methods for post-genomic data, Jan 2007, Paris, France
Communication dans un congrès hal-00461724v1

Improving type II error rates of multiple tests by use of auxiliary variables. Application to microarray data

Maela Kloareg , David Causeur
XIIth International conference on Applied Stochastic Models andData Analysis (ASMDA2007), May 2007, Chania, Greece
Communication dans un congrès hal-00461712v1

Reducing the non-discovery rate by use of auxiliary variables in microarray experiments

Maela Kloareg , David Causeur , Marie M. Damon
5. Workshop Statistical Methods for Post-Genomic Data (SMPGD), Jan 2007, Paris, France. 2 p
Communication dans un congrès hal-02818987v1

Variations in mammary extraction of nutrients under the effect of a 36-h milk accumulation into the udder in dairy cows

Jocelyne Guinard-Flament , D. Causeur , Eloise E. Delamaire
2. International Symposium on Energy and protein metabolism and nutrition ISEP, Sep 2007, Vichy, France
Communication dans un congrès hal-02757430v1

Facteurs de variation de la détection des chaleurs chez la vache laitière conduite en vêlages groupés

Erwan Cutullic , Luc Delaby , David Causeur , Catherine Disenhaus
XIIIè Rencontres recherche ruminants, Dec 2006, Paris, France
Communication dans un congrès hal-00461729v1

Maximising piglet survival

Jean Le Dividich , Yannick Le Cozler , D. Causeur
57. Annual Meeting of the European Association for Animal Production, Sep 2006, Antalya, Turkey
Communication dans un congrès hal-02754310v1

Maximizing piglet survival

J. Le Dividich , Yannick Le Cozler , David Causeur
57th Annual Meeting of the European Association for Animal Production, Sep 2006, Antalya, Turkey
Communication dans un congrès hal-00461746v1

Facteurs de variation de la détection des chaleurs chez la vache laitière conduite en vêlages groupés

Erwan Cutullic , Luc Delaby , D. Causeur , Catherine Disenhaus
13. Rencontres Recherches Ruminants, Dec 2006, Paris, France
Communication dans un congrès hal-02755093v1

Prédiction de la composition chimique des truies reproductrices à partir du poids vif et de l'épaisseur de lard dorsal : Application à la définition des besoins énergétiques

Jean-Yves Dourmad , M. Etienne , Jean Noblet , D. Causeur
29. Journées de la recherche porcine en France, Feb 1997, Paris, France
Communication dans un congrès hal-02841306v1

Prediction sur matrices de distances

D. Causeur , T. Dhorne
Journees de Statistique, May 1993, Vannes, France
Communication dans un congrès hal-02779050v1
Image document

Integrative responses of pig adipose tissues to high-fat high-fiber diet: towards key regulators of energy flexibility

Florence Gondret , Annie Vincent , Magalie Houee , Sandrine Lagarrigue , Anne Siegel
ASAS/ADSA midwest meeting, Mar 2015, Des Moines, United States. Journal of Animal Science, 93 (Suppl. 2), 2015, Abstract book of the ASAS/ADSA midwest meeting
Poster de conférence hal-01210925v1

How food protein structure can modulate the protein digestion behaviour: Evaluation by nutritional peptidomics

Kéra Nyemb , Julien Jardin , David Causeur , Catherine Guérin-Dubiard , Didier Dupont
Food Structure and Functionality Forum Symposium from Molecules to Functionality, Mar 2014, Amsterdam, Netherlands. 2014
Poster de conférence hal-01189918v1
Image document

The R package FANet: sparse factor analysis model for high dimensional gene co-expression networks

Anne Blum , Magalie Houee , Sandrine Lagarrigue , David Causeur
The International R Users Conference, Jun 2014, Los Angeles, United States. 2014, UserR contributed abstracts
Poster de conférence hal-01211038v1

Factor modelling of multiple time series to detect temporal variations in common dynamics

Anne Lehébel , David Causeur
4. Channel Network Conference - IBS (International Biometry Society), Jul 2013, Saint Andrews, United Kingdom. 2013
Poster de conférence hal-02805490v1
Image document

Quantitative Mass Spectrometry for nutritional peptidomics Evaluating the impact of food processing by multivariate statistical approaches

Kéra Nyemb , Julien Jardin , David Causeur , Catherine Guérin-Dubiard , Didier Dupont
EUPA 2013, Oct 2013, Saint-Malo, France. 2013
Poster de conférence hal-01209499v1

Genetic analysis of a complex trait using transcriptomic data: contribution of gene regulatory network modeling

Anne Blum , Magalie Houee , Chloé Friguet , Sandrine Lagarrigue , David Causeur
XX. Conference of the plant & animal genome (PAG), Jan 2012, San Diego, United States. 2012
Poster de conférence hal-02806842v1
Image document

Transcriptome profiling reveals interaction between two QTL for fatness in chicken

Yuna Blum , Guillaume G. Le Mignon , Colette Désert , Frederique Pitel , David Causeur
XXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics
Poster de conférence hal-02754276v1
Image document

A factor model to analyse heterogeneity in gene expression in a context of QTL characterization

Yuna Blum , Sandrine Lagarrigue , David Causeur
XXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics
Poster de conférence hal-02754275v1

Improving Type-II error rates of multiple testing procedures by use of auxiliary variables. Application to microrray data

Maela Kloareg , David Causeur
Recent advances in Stochastic Modelling and data Analysis, World Scientific, pp.645-xx, 2007
Chapitre d'ouvrage hal-00459319v1