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Proposal of 'Candidatus Frankia alpina', the uncultured symbiont of Alnus alnobetula and A. incana that forms spore-containing nitrogen-fixing root nodules

 Adrien C Meynier Pozzi , Aude Herrera-Belaroussi , Guillaume Schwob , Hector H Bautista-Guerrero , Lorine Bethencourt , et al.
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (10), pp.5453-5459. ⟨10.1099/ijsem.0.004433⟩
Article dans une revue hal-03378158v1
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Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway

 Cécile Gruet , Andréa Oudot , Danis Abrouk , Yvan Moënne-Loccoz , Daniel Muller
Applied Soil Ecology, 2022, 173, pp.104363. ⟨10.1016/j.apsoil.2021.104363⟩
Article dans une revue hal-03533870v1
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Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

 Florent Lassalle , Tony Campillo , Ludovic Vial , Jessica Baude , Denis Costechareyre , et al.
Genome Biology and Evolution, 2011, 3 (3), pp.762-781. ⟨10.1093/gbe/evr070⟩
Article dans une revue halsde-00723400v1
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Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-planta

 Aude Herrera-Belaroussi , Philippe Normand , Katharina Pawlowski , Maria Fernandez , Daniel Wibberg , et al.
Systematic and Applied Microbiology, 2020, 43 (6), pp.126134. ⟨10.1016/j.syapm.2020.126134⟩
Article dans une revue hal-03150467v1
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Wheat genome architecture influences interactions with phytobeneficial microbial functional groups in the rhizosphere

 Cécile Gruet , Danis Abrouk , Andreas Börner , Daniel Muller , Yvan Moënne-Loccoz
Plant, Cell and Environment, 2023, 46 (3), pp.1018-1032. ⟨10.1111/pce.14508⟩
Article dans une revue hal-04317066v1
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Taxonomic assignment of uncultured prokaryotes with long range PCR targeting the spectinomycin operon

 Jean-Pierre Flandrois , Céline Brochier-Armanet , Jérôme Briolay , Danis Abrouk , Guillaume P Schwob , et al.
Research in Microbiology, 2019, 170 (6-7), pp.280-287. ⟨10.1016/j.resmic.2019.06.005⟩
Article dans une revue hal-02327832v1
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Pseudomonas ST1 and Pantoea Paga Strains Cohabit in Olive Knots

 Gabriela Vuletin Selak , Marina Raboteg Božiković , Danis Abrouk , Marija Bolčić , Katja Žanić , et al.
Microorganisms, 2022, 10 (8), pp.1529. ⟨10.3390/microorganisms10081529⟩
Article dans une revue hal-03789075v1
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Genomic Insights of Alnus-Infective Frankia Strains Reveal Unique Genetic Features and New Evidence on Their Host-Restricted Lifestyle

 Sandra Kim Tiam , Hasna Boubakri , Lorine Bethencourt , Danis Abrouk , Pascale Fournier , et al.
Genes, 2023, 14 (2), pp.530. ⟨10.3390/genes14020530⟩
Article dans une revue hal-04522975v1

Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.

 A. Sen , Vincent Daubin , D. Abrouk , I. Gifford , A. M. Berry , et al.
International Journal of Systematic and Evolutionary Microbiology, 2014, 64 (Pt 11), pp.3821-32. ⟨10.1099/ijs.0.063966-0⟩
Article dans une revue hal-01182770v1

Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa

 Maria P. Fernandez , Philippe Normand , Imen Nouioui , Petar Pujic , Pascale Fournier , et al.
International Journal of Systematic and Evolutionary Microbiology, 2018, 68 (-), pp.3001-3011. ⟨10.1099/ijsem.0.002939⟩
Article dans une revue hal-02479066v1

Draft genome sequences for three unisolated Alnus -infective Frankia Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced Frankia strains able to sporulate in-planta

 Lorine Bethencourt , Florian Vautrin , Najwa Taib , Audrey Dubost , Lucia Castro-Garcia , et al.
Journal of Genomics, 2019, 7, pp.50-55. ⟨10.7150/jgen.35875⟩
Article dans une revue hal-02473983v1
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Microbiome Analysis of New, Insidious Cave Wall Alterations in the Apse of Lascaux Cave

 Lise Alonso , Thomas Pommier , Danis Abrouk , Mylène Hugoni , Van Tran Van , et al.
Microorganisms, 2022, 10 (12), pp.2449. ⟨10.3390/microorganisms10122449⟩
Article dans une revue hal-04032220v1
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The proteogenome of symbiotic $Frankia\ alni$ in $Alnus\ glutinosa$ nodules

 Petar Pujic , Nicole Alloisio , Guylaine Miotello , Jean Armengaud , Danis Abrouk , et al.
Microorganisms, 2022, 10 (3), pp.651. ⟨10.3390/microorganisms10030651⟩
Article dans une revue hal-03639682v1
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Complex ecological interactions of Staphylococcus aureus in tampons during menstruation

 Isaline Jacquemond , Anaëlle Muggeo , Gery Lamblin , Anne Tristan , Yves Gillet , et al.
Scientific Reports, 2018, 8 (1), pp.9942. ⟨10.1038/s41598-018-28116-3⟩
Article dans une revue hal-01910908v1
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Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot

 Gabriela Vuletin Selak , Marina Raboteg , Audrey Dubost , Danis Abrouk , Philippe Normand , et al.
Microbiology Resource Announcements, 2019, 8 (42), ⟨10.1128/MRA.00978-19⟩
Article dans une revue hal-02473982v1
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Genome Sequences of Three Nocardia cyriacigeorgica Strains and One Nocardia asteroides Strain

 Florian Vautrin , Emmanuelle Bergeron , Audrey Dubost , Danis Abrouk , Christophe Martin , et al.
Microbiology Resource Announcements, 2019, 8 (33), pp.e00600-19. ⟨10.1128/MRA.00600-19⟩
Article dans une revue hal-02386389v1

Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues

 Laura Cave , Elisabeth Brothier , Danis Abrouk , Panignimyandé Salomon Bouda , Edmond Hien , et al.
Applied Microbiology and Biotechnology, 2016, 100 (24), pp.10597-10608. ⟨10.1007/s00253-016-7950-5⟩
Article dans une revue hal-01608820v1
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Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts

 Amal Ben Ayed , Geoffroy Saint-Genis , Laurent Vallon , Dolores Linde , Annick Turbé-Doan , et al.
Journal of Fungi, 2021, 7 (5), pp.321. ⟨10.3390/jof7050321⟩
Article dans une revue hal-03215284v2
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Diversifying anaerobic respiration strategies to compete in the rhizosphere

 Solène M. Lecomte , Wafa Achouak , Danis Abrouk , Thierry Heulin , Xavier Nesme , et al.
Frontiers in Environmental Science, 2018, 6, pp.139. ⟨10.3389/fenvs.2018.00139⟩
Article dans une revue cea-01968930v1
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Implications of carbon catabolite repression for plant–microbe interactions

 Theophile Franzino , Hasna Boubakri , Tomislav Cernava , Danis Abrouk , Wafa Achouak , et al.
Plant Communications, 2022, 3, pp.100272. ⟨10.1016/j.xplc.2021.100272⟩
Article dans une revue hal-03541905v1
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Plant hosts control microbial denitrification activity

 Wafa Achouak , Danis Abrouk , Julien Guyonnet , ​mohamed Barakat , Philippe Ortet , et al.
FEMS Microbiology Ecology, 2019, 95 (3), pp.fiz021. ⟨10.1093/femsec/fiz021⟩
Article dans une revue cea-02096084v1
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Effect of Inoculation Level on the Impact of the PGPR Azospirillum lipoferum CRT1 on Selected Microbial Functional Groups in the Rhizosphere of Field Maize

 Sébastien Renoud , Danis Abrouk , Claire Prigent Combaret , Florence Wisniewski-Dyé , Laurent Legendre , et al.
Microorganisms, 2022, 10 (2), pp.325. ⟨10.3390/microorganisms10020325⟩
Article dans une revue hal-03579580v1
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Datamining and functional environmental genomics reassess the phylogenetics and functional diversity of fungal monosaccharide transporters

 Florian Barbi , Laurent Vallon , Carmen Guerrero-Galán , Sabine D. Zimmermann , Delphine Melayah , et al.
Applied Microbiology and Biotechnology, In press, 105 (2), pp.647-660. ⟨10.1007/s00253-020-11076-y⟩
Article dans une revue hal-03098260v1
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Correction: Pujic et al. The Proteogenome of Symbiotic Frankia alni in Alnus glutinosa Nodules. Microorganisms 2022, 10, 651

 Petar Pujic , Nicole Alloisio , Guylaine Miotello , Jean Armengaud , Danis Abrouk , et al.
Microorganisms, 2022, 10 (11), pp.2229. ⟨10.3390/microorganisms10112229⟩
Article dans une revue hal-04459947v1

Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size

 Adrien C Pozzi , Hector Bautista-Guerrero , Sophie S. Abby , Aude P Herrera-Belaroussi , Danis Abrouk , et al.
Systematic and Applied Microbiology, 2018, 41 (4), pp.311-323. ⟨10.1016/j.syapm.2018.03.002⟩
Article dans une revue hal-02313880v1
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Genome sequence of pseudomonas sp. strain ST1, isolated fromo Olive (Olea europaea L.) knot galls in croatia

 Gabriela Vuletin Selak , Marina Raboteg , Pascale Fournier , Audrey Dubost , Danis Abrouk , et al.
Microbiology Resource Announcements, 2019, 8 (46), ⟨10.1128/MRA.00986-19⟩
Article dans une revue hal-02620105v1
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