Daniel Muller

Documents

Identifiants chercheurs

daniel-muller
ResearcherId : C-6827-2008
0000-0002-6619-4691
IdRef : 090311310
ResearcherId : http://www.researcherid.com/rid/C-6827-2008

Présentation

Publications

	Microbial diversity in soils suppressive to Fusarium diseases Irena Todorović , Yvan Moënne-Loccoz , Vera Raic , Jelena Jovičić-Petrović , Daniel Muller Frontiers in Plant Science, 2023, 14, pp.1228749. ⟨10.3389/fpls.2023.1228749⟩ Article dans une revue hal-04320379v1
	Wheat genome architecture influences interactions with phytobeneficial microbial functional groups in the rhizosphere Cécile Gruet , Danis Abrouk , Andreas Börner , Daniel Muller , Yvan Moënne-Loccoz Plant, Cell and Environment, 2023, 46 (3), pp.1018-1032. ⟨10.1111/pce.14508⟩ Article dans une revue hal-04317066v1
	A metagenomic lens into endosphere microbial communities, promises, and discoveries Bartholomew Saanu Adeleke , Daniel Muller , Olubukola Oluranti Babalola Letters in Applied Microbiology, 2023, 76 (2), ⟨10.1093/lambio/ovac030⟩ Article dans une revue hal-04244433v1
	Two novel species isolated from wheat rhizospheres in Serbia: Pseudomonas serbica sp. nov. and Pseudomonas serboccidentalis sp. nov. Irena Todorović , Danis Abrouk , Martina Kyselková , Céline Lavire , Marjolaine Rey Systematic and Applied Microbiology, 2023, 46 (4), pp.126425. ⟨10.1016/j.syapm.2023.126425⟩ Article dans une revue hal-04244409v1
	Genomic content of wheat has a higher influence than plant domestication status on the ability to interact with Pseudomonas plant growth‐promoting rhizobacteria Cécile Gruet , Maroua Alaoui , Florence Gerin , Claire Prigent-Combaret , Andreas Börner Plant, Cell and Environment, 2023, 46 (12), pp.3933-3948. ⟨10.1111/pce.14698⟩ Article dans une revue hal-04245524v1
	Significance of the Diversification of Wheat Species for the Assembly and Functioning of the Root-Associated Microbiome Cécile Gruet , Daniel Muller , Yvan Moënne-Loccoz Frontiers in Microbiology, 2022, 12, pp.782135. ⟨10.3389/fmicb.2021.782135⟩ Article dans une revue hal-03514878v1
	Effect of Inoculation Level on the Impact of the PGPR Azospirillum lipoferum CRT1 on Selected Microbial Functional Groups in the Rhizosphere of Field Maize Sébastien Renoud , Danis Abrouk , Claire Prigent Combaret , Florence Wisniewski-Dyé , Laurent Legendre Microorganisms, 2022, 10 (2), pp.325. ⟨10.3390/microorganisms10020325⟩ Article dans une revue hal-03579580v1
	Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway Cécile Gruet , Andréa Oudot , Danis Abrouk , Yvan Moënne-Loccoz , Daniel Muller Applied Soil Ecology, 2022, 173, pp.104363. ⟨10.1016/j.apsoil.2021.104363⟩ Article dans une revue hal-03533870v1
	Field Site-Specific Effects of an Azospirillum Seed Inoculant on Key Microbial Functional Groups in the Rhizosphere Sébastien Renoud , Jordan Vacheron , Danis Abrouk , Claire Prigent Combaret , Laurent Legendre Frontiers in Microbiology, 2022, 12, pp.760512. ⟨10.3389/fmicb.2021.760512⟩ Article dans une revue hal-03763575v1
	Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities Beatriz Manriquez , Daniel Muller , Claire Prigent-Combaret , Claire Prigent Combaret Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.619122⟩ Article dans une revue hal-03300724v1
	Author Correction: Complex ecological interactions of Staphylococcus aureus in tampons during menstruation Isaline Jacquemond , Anaëlle Muggeo , Gery Lamblin , Anne Tristan , Yves Gillet Scientific Reports, 2020, 10 (1), pp.1848. ⟨10.1038/s41598-020-57947-2⟩ Article dans une revue hal-04245533v1
	Secondary metabolites from plant‐associated Pseudomonas are overproduced in biofilm Laura Rieusset , Marjolaine Rey , Daniel Muller , Jordan Vacheron , Florence Gerin Microbial Biotechnology, 2020, 13 (5), pp.1562-1580. ⟨10.1111/1751-7915.13598⟩ Article dans une revue hal-03000801v1
	Co-occurrence of rhizobacteria with nitrogen fixation and/or 1-aminocyclopropane-1-carboxylate deamination abilities in the maize rhizosphere Sébastien Renoud , Marie-Lara Bouffaud , Audrey Dubost , Claire Prigent-Combaret , Laurent Legendre FEMS Microbiology Ecology, 2020, 96 (5), ⟨10.1093/femsec/fiaa062⟩ Article dans une revue hal-02547931v1
	Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women Myriam Chiaruzzi , Alexia Barbry , Anaëlle Muggeo , Anne Tristan , Isaline Jacquemond Applied and Environmental Microbiology, 2020, 86 (18), pp.e01249-20. ⟨10.1128/AEM.01249-20⟩ Article dans une revue hal-02989503v2
	Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov Vahid Keshavarz-Tohid , Jordan Vacheron , Audrey Dubost , Claire Prigent-Combaret , Parissa Taheri Systematic and Applied Microbiology, 2019, 42 (4), pp.468-480. ⟨10.1016/j.syapm.2019.04.004⟩ Article dans une revue hal-02392254v1
	Complex ecological interactions of Staphylococcus aureus in tampons during menstruation Isaline Jacquemond , Anaëlle Muggeo , Gery Lamblin , Anne Tristan , Yves Gillet Scientific Reports, 2018, 8 (1), pp.9942. ⟨10.1038/s41598-018-28116-3⟩ Article dans une revue hal-01910908v1
	1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species Marie-Lara Bouffaud , Sébastien Renoud , Audrey Dubost , Yvan Moënne-Loccoz , Daniel Muller Microbiome, 2018, 6 (1), ⟨10.1186/s40168-018-0503-7⟩ Article dans une revue hal-02148378v1
	Impact of currently marketed tampons and menstrual cups on Staphylococcus aureus growth and TSST-1 production in vitro Louis Nonfoux , Myriam Chiaruzzi , Cédric Badiou , Jessica Baude , Anne Tristan Applied and Environmental Microbiology, 2018, 84 (12), ⟨10.1128/AEM.00351-18⟩ Article dans une revue hal-01911407v1
	Draft genome sequence of plant growth-promoting bacillus altitudinis strain pae4 Nahed Abdel Ghaffar Abdel Aziz Ibrahim , Mohamed Nabil Abdel Mageed Omar , Ghada A. Abu El Heba , Yvan Moenne-Loccoz , Claire Prigent Combaret Microbiology Resource Announcements, 2018, 7 (13), pp.1-2. ⟨10.1128/MRA.00962-18⟩ Article dans une revue hal-02159605v1
	Let the core microbiota be functional Philippe P. Lemanceau , Manuel Blouin , Daniel Muller , Yvan Moenne-Loccoz Trends in Plant Science, 2017, 22 (7), pp.583-595. ⟨10.1016/j.tplants.2017.04.008⟩ Article dans une revue hal-01608595v1
	Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays Jordan Vacheron , Guilhem Desbrosses , Sébastien Renoud , Rosa-Maria Padilla-Aguilar , Vincent Walker Molecular Plant-Microbe Interactions, 2017, 31 (2), ⟨10.1094/MPMI-07-17-0185-R⟩ Article dans une revue hal-01613633v1
	Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the pseudomonas spp. reveals unexpected polyphyletism Juliana Almario , Maxime Bruto , Jordan Vacheron , Claire Prigent-Combaret , Yvan Moenne-Loccoz Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01218⟩ Article dans une revue hal-01608669v1
	Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani Vahid Keshavarz-Tohid , Parissa Taheri , Daniel Muller , Claire Prigent-Combaret , Jordan Vacheron Research in Microbiology, 2017, 168 (8), pp.760-772. ⟨10.1016/j.resmic.2017.08.002⟩ Article dans une revue hal-02487202v1
	Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium Florent Lassalle , Rémi Planel , Simon Penel , David Chapulliot , Valérie Barbe Genome Biology and Evolution, 2017, 9 (12), pp.3413 - 3431. ⟨10.1093/gbe/evx255⟩ Article dans une revue hal-01913841v1
	Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere Jordan Vacheron , Audrey Dubost , David Chapulliot , Claire Prigent-Combaret , Daniel Muller Genome Announcements, 2017, 5 (15), pp.e00122-17. ⟨10.1128/genomeA.00122-17⟩ Article dans une revue hal-02487196v1
	Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113 Jordan Vacheron , Emeline Combes-Meynet , Vincent Walker , B. Gouesnard , Daniel Muller Plant and Soil, 2016, 407 (1-2), pp.187-202. ⟨10.1007/s11104-016-2907-0⟩ Article dans une revue hal-02466011v1
	Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere? Marie-Lara Bouffaud , Sebastien Renoud , Yvan Moënne-Loccoz , Daniel Muller Scientific Reports, 2016, 6, pp.21690. ⟨10.1038/srep21690⟩ Article dans une revue hal-02466010v1
	Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere Jordan Vacheron , Yvan Moënne-Loccoz , Audrey Dubost , Maximilien Gonçalves-Martins , Daniel Muller Plant Biotic Interactions, 2016, 7, pp.1212. ⟨10.3389/fpls.2016.01212⟩ Article dans une revue hal-02466008v1
	Comparative genomics of environmental and clinical stenotrophomonas maltophiliaStrains with different antibiotic resistance profiles Benjamin Youenou , Sabine Favre-Bonte , Josselin Bodilis , Elisabeth Brothier , Audrey Dubost Genome Biology and Evolution, 2015, 7 (9), pp.2484-2505. ⟨10.1093/gbe/evv161⟩ Article dans une revue hal-01605055v1
	Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis Florent Lassalle , Daniel Muller , Xavier Nesme Research in Microbiology, 2015, 166 (10), pp.729-741. ⟨10.1016/j.resmic.2015.06.008⟩ Article dans une revue hal-02547960v1
	Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale Suzanne Donn , Juliana Almario , Daniel Muller , Yvan Moënne-Loccoz , Vadakattu V.S.R. Gupta Applied Soil Ecology, 2014, 78, pp.37-47. ⟨10.1016/j.apsoil.2014.02.001⟩ Article dans une revue hal-01010607v1
	Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco Juliana Almario , Daniel Muller , Geneviève Défago , Yvan Moënne-Loccoz Environmental Microbiology, 2014, pp.1-12. ⟨10.1111/1462-2920.12459⟩ Article dans une revue hal-01010573v1
	Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria Maxime Bruto , Claire Prigent-Combaret , Daniel Muller , Yvan Moënne-Loccoz Scientific Reports, 2014, 4, pp.6261. ⟨10.1038/srep06261⟩ Article dans une revue hal-02487456v1
	Root microbiome relates to plant host evolution in maize and other Poaceae Marie-Lara Bouffaud , Marie-Andrée Poirier , Daniel Muller , Yvan Moënne-Loccoz Environmental Microbiology, 2014, ⟨10.1111/1462-2920.12442⟩ Article dans une revue hal-01010591v1
	Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes Maxime Bruto , Claire Prigent-Combaret , P. Luis , Yvan Moënne-Loccoz , Daniel Muller Proceedings of the Royal Society B: Biological Sciences, 2014, 281 (1789), pp.20140848. ⟨10.1098/rspb.2014.0848⟩ Article dans une revue hal-02487460v1
	Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid Martha H. Ramírez-Bahena , Ludovic Vial , Florent Lassalle , Benjamin Diel , David Chapulliot Molecular Phylogenetics and Evolution, 2014, 73, pp.202-207. ⟨10.1016/j.ympev.2014.01.005⟩ Article dans une revue hal-01010660v1
	Evaluation of rhizobacterial indicators of tobacco black root rot suppressiveness in farmers' fields Martina Kyselková , Juliana Almario , Jan Kopecký , Markéta Ságová-Marečková , Jacqueline Haurat Environmental Microbiology Reports, 2014, ⟨10.1111/1758-2229.12131⟩ Article dans une revue hal-01010640v1
	Plant growth-promoting rhizobacteria and root system functioning Jordan Vacheron , G. Desbrosses , Marie.-Lara Bouffaud , B. Touraine , Yvan Moënne-Loccoz Frontiers in Plant Science, 2013, 4, pp.356. ⟨10.3389/fpls.2013.00356⟩ Article dans une revue hal-02522224v1
	Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and soil receptivity to tobacco black root rot in Savoie region (France) Juliana Almario , Martina Kyselková , J. Kopecký , M. Ságová-Marečková , Daniel Muller Plant and Soil, 2013, pp.1-12. ⟨10.1007/s11104-013-1677-1⟩ Article dans une revue hal-02522203v1
	Unexpected phytostimulatory behavior for Escherichia coli and Agrobacterium tumefaciens model strains. Vincent Walker , Maxime Bruto , Floriant Bellvert , René Bally , Daniel Muller Molecular Plant-Microbe Interactions, 2013, 26 (5), pp.495-502. ⟨10.1094/MPMI-12-12-0298-R⟩ Article dans une revue hal-00965830v1
	Investigating the species and strain diversity of agrobacteria by MLSA: toward a phylogenetically relevant redefinition of the genus Agrobacterium. X. Nesme , D. Costechareyre , M. H. R. Bahena , Daniel Muller , J. Nesme Frontiers in Plant-Microbe Interaction, 2013 Article dans une revue hal-02522212v1
	Effect of Clay Mineralogy on Iron Bioavailability and Rhizosphere Transcription of 2,4-Diacetylphloroglucinol Biosynthetic Genes in Biocontrol Pseudomonas protegens Juliana Almario , Claire Prigent-Combaret , Daniel Muller , Yvan Moënne-Loccoz Molecular Plant-Microbe Interactions, 2013, 26 (5), pp.566-574. ⟨10.1094/MPMI-11-12-0274-R⟩ Article dans une revue hal-02522202v1
	Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26. Jérémy Andres , Florence Arsène-Ploetze , Valérie Barbe , Céline Brochier-Armanet , Jessica Cleiss-Arnold Genome Biology and Evolution, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩ Article dans une revue hal-00972245v1
	Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils Juliana Almario , Yvan Moënne-Loccoz , Daniel Muller Soil Biology and Biochemistry, 2012, ⟨10.1016/j.soilbio.2012.09.003⟩ Article dans une revue hal-02532808v1
	Is diversification history of maize influencing selection of soil bacteria by roots? Marie-Lara Bouffaud , Martina Kyselková , Brigitte Gouesnard , Genevieve Grundmann , Daniel Muller Molecular Ecology, 2012, 21 (1), pp.195-206. ⟨10.1111/j.1365-294X.2011.05359.x⟩ Article dans une revue halsde-00722561v1
	Unified Nomenclature for Genes Involved in Prokaryotic Aerobic Arsenite Oxidation Marie-Claire Lett , Daniel Muller , Didier Lièvremont , Simon Silver , Joanne Santinid Journal of Bacteriology, 2012, pp.207-208. ⟨10.1128/JB.06391-11⟩ Article dans une revue halsde-00722718v1
	Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria Martha Helena Ramírez-Bahena , Xavier Nesme , Daniel Muller Journal of Basic Microbiology, 2012, 52 (52), pp.1-4. ⟨10.1002/jobm.201100278⟩ Article dans une revue halsde-00723073v1
	Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens Florent Lassalle , Tony Campillo , Ludovic Vial , Jessica Baude , Denis Costechareyre Genome Biology and Evolution, 2011, 3 (3), pp.762-781. ⟨10.1093/gbe/evr070⟩ Article dans une revue halsde-00723400v1
	Arsenite Oxidase from Ralstonia sp. 22: characterization of the enzyme and its interaction with soluble cytochromes. Aurélie Lieutaud , Robert van Lis , Simon Duval , Line Capowiez , Daniel Muller Journal of Biological Chemistry, 2010, 285 (27), pp.20433-20441. ⟨10.1074/jbc.M110.113761⟩ Article dans une revue hal-01602032v1
	Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlings Olivier Couillerot , Marie-Lara Bouffaud , Baudoin Ezékiel , Daniel Muller , Jesus Caballero-Mellado Soil Biology and Biochemistry, 2010, 42 (12), pp.2298-2305. ⟨10.1016/j.soilbio.2010.09.003⟩ Article dans une revue hal-00874738v1
	Structure, function, and evolution of the Thiomonas spp. genome. Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩ Article dans une revue hal-00463879v1
	Diversity surveys and evolutionary relationships of aoxB genes in aerobic arsenite-oxidizing bacteria. Marianne Quéméneur , Audrey Heinrich-Salmeron , Daniel Muller , Didier Lièvremont , Michel Jauzein Applied and Environmental Microbiology, 2008, 74 (14), pp.4567-73. ⟨10.1128/AEM.02851-07⟩ Article dans une revue hal-00370780v1
	Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study. M.-C. Lett , Aurélie Lieutaud , Daniel Muller , J. Ratouchniak , V. Bonnefoy Environmental Microbiology, 2008, 10 (1), pp.228-37. ⟨10.1111/j.1462-2920.2007.01447.x⟩ Article dans une revue hal-00281294v1
	A Bacterial Effector Targets Mad2L2, an APC Inhibitor, to Modulate Host Cell Cycling Hiroki Iwai , Minsoo Kim , Yuko Yoshikawa , Hiroshi Ashida , Michinaga Ogawa Cell, 2007, 130 (4), pp.611-623. ⟨10.1016/j.cell.2007.06.043⟩ Article dans une revue hal-04245669v1
	A tale of two oxidation states: bacterial colonization of arsenic-rich environments. Daniel Muller , Claudine Médigue , Sandrine Koechler , Valérie Barbe , mohamed Barakat PLoS Genetics, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩ Article dans une revue hal-00340034v1
	Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium. Daniel Muller , Diliana D Simeonova , Philippe Riegel , Sophie Mangenot , Sandrine Koechler International Journal of Systematic and Evolutionary Microbiology, 2006, 56 (Pt 8), pp.1765-9. ⟨10.1099/ijs.0.64308-0⟩ Article dans une revue hal-00113703v1
	Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome. Christine Carapito , Daniel Muller , Evelyne Turlin , Sandrine Koechler , Antoine Danchin Biochimie, 2006, 88 (6), pp.595-606. ⟨10.1016/j.biochi.2005.11.004⟩ Article dans une revue hal-00370783v1
	Arsenite oxidation in batch reactors with alginate‐immobilized ULPAs1 strain Diliana Simeonova , Kalina Micheva , Daniel A.E. Muller , Florence Lagarde , Marie‐claire Lett Biotechnology and Bioengineering, 2005, 91 (4), pp.441-446. ⟨10.1002/bit.20530⟩ Article dans une revue hal-04250284v1
	Chemiluminescence of enterococci isolates from freshwater. Philippe Andre , Catherine Metzger , Sophie Petey , Dominique J-M Vidon , Daniel Muller Microbiology Letters, 2005, 245 (1), pp.123-9. ⟨10.1016/j.femsle.2005.02.036⟩ Article dans une revue hal-00106769v1
	Microplate screening assay for the detection of arsenite-oxidizing and arsenate-reducing bacteria Diliana Simeonova , Florence Lagarde , Daniel A.E. Muller , Veneta Groudeva , Marie-Claire Lett FEMS Microbiology Letters, 2004, 237 (2), pp.249-253. ⟨10.1111/j.1574-6968.2004.tb09703.x⟩ Article dans une revue hal-04247135v1
	Arsenite oxidase, an ancient bioenergetic enzyme. Evelyne Lebrun , Myriam Brugna , Frauke Baymann , Daniel Muller , Didier Lièvremont Mol Biol Evol, 2003, 20 (5), pp.686-93. ⟨10.1093/molbev/msg071⟩ Article dans une revue hal-00113712v1
	Arsenite oxidase aox genes from a metal-resistant beta-proteobacterium. Daniel Muller , Didier Lièvremont , Diliana Dancheva Simeonova , Jean-Claude Hubert , Marie-Claire Lett Journal of Bacteriology, 2003, 185 (1), pp.135-41 Article dans une revue hal-00113723v1

	Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum Jordan Vacheron , Sébastien Renoud , Daniel Muller , Olubukola Oluranti Babalola , Claire Prigent-Combaret Fabricio Dario Cassán; Yaacov Okon; Cecilia M. Creus. Handbook for Azospirillum, Springer International Publishing, pp.333-365, 2015, 978-3-319-06542-7. ⟨10.1007/978-3-319-06542-7_19⟩ Chapitre d'ouvrage hal-02457880v1
	Plant growth-promoting properties of Pseudomonas biocontrol agent producing 2,4 diacetylphloroglucinol Jordan Vacheron , Emeline Combes-Meynet , Yvan Moënne-Loccoz , Daniel Muller , Claire Prigent Combaret Cédric Bertrand. Natural Products and Biocontrol, Presses universitaires de Perpignan, 2014, 978-2-35412-234-8 Chapitre d'ouvrage hal-02479158v1
	Horizontal Acquisition of Prokaryotic Genes for Eukaryote Functioning and Niche Adaptation Maxime Bruto , Claire Prigent Combaret , Patricia Luis , Gregory Hoff , Yvan Moënne-Loccoz Evolutionary Biology : Exobiology and Evolutionary Mechanisms, Springer, 2013, 978-3-642-38211-6. ⟨10.1007/978-3-642-38212-3_11⟩ Chapitre d'ouvrage hal-02563676v1
	Rapid and Efficient Methods to Isolate, Type Strains and Determine Species of Agrobacterium spp. in Pure Culture and Complex Environments Malek Shams , Tony Campillo , Céline Lavire , Daniel Muller , Xavier Nesme Biochemical Testing, InTech, 2012, 978-953-51-0249-6. ⟨10.5772/36068⟩ Chapitre d'ouvrage hal-02566900v1

Daniel Muller

Présentation

Publications

Microbial diversity in soils suppressive to Fusarium diseases

Wheat genome architecture influences interactions with phytobeneficial microbial functional groups in the rhizosphere

A metagenomic lens into endosphere microbial communities, promises, and discoveries

Two novel species isolated from wheat rhizospheres in Serbia: Pseudomonas serbica sp. nov. and Pseudomonas serboccidentalis sp. nov.

Genomic content of wheat has a higher influence than plant domestication status on the ability to interact with Pseudomonas plant growth‐promoting rhizobacteria

Significance of the Diversification of Wheat Species for the Assembly and Functioning of the Root-Associated Microbiome

Effect of Inoculation Level on the Impact of the PGPR Azospirillum lipoferum CRT1 on Selected Microbial Functional Groups in the Rhizosphere of Field Maize

Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway

Field Site-Specific Effects of an Azospirillum Seed Inoculant on Key Microbial Functional Groups in the Rhizosphere

Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities

Author Correction: Complex ecological interactions of Staphylococcus aureus in tampons during menstruation

Secondary metabolites from plant‐associated Pseudomonas are overproduced in biofilm

Co-occurrence of rhizobacteria with nitrogen fixation and/or 1-aminocyclopropane-1-carboxylate deamination abilities in the maize rhizosphere

Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women

Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov

Complex ecological interactions of Staphylococcus aureus in tampons during menstruation

1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species

Impact of currently marketed tampons and menstrual cups on Staphylococcus aureus growth and TSST-1 production in vitro

Draft genome sequence of plant growth-promoting bacillus altitudinis strain pae4

Let the core microbiota be functional

Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays

Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the pseudomonas spp. reveals unexpected polyphyletism

Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere

Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113

Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere?

Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere

Comparative genomics of environmental and clinical stenotrophomonas maltophiliaStrains with different antibiotic resistance profiles

Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis

Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale

Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco

Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria

Root microbiome relates to plant host evolution in maize and other Poaceae

Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes

Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid

Evaluation of rhizobacterial indicators of tobacco black root rot suppressiveness in farmers' fields

Plant growth-promoting rhizobacteria and root system functioning

Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and soil receptivity to tobacco black root rot in Savoie region (France)

Unexpected phytostimulatory behavior for Escherichia coli and Agrobacterium tumefaciens model strains.

Investigating the species and strain diversity of agrobacteria by MLSA: toward a phylogenetically relevant redefinition of the genus Agrobacterium.

Effect of Clay Mineralogy on Iron Bioavailability and Rhizosphere Transcription of 2,4-Diacetylphloroglucinol Biosynthetic Genes in Biocontrol Pseudomonas protegens

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils

Is diversification history of maize influencing selection of soil bacteria by roots?

Unified Nomenclature for Genes Involved in Prokaryotic Aerobic Arsenite Oxidation

Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria

Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

Arsenite Oxidase from Ralstonia sp. 22: characterization of the enzyme and its interaction with soluble cytochromes.

Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlings

Structure, function, and evolution of the Thiomonas spp. genome.

Diversity surveys and evolutionary relationships of aoxB genes in aerobic arsenite-oxidizing bacteria.

Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study.

A Bacterial Effector Targets Mad2L2, an APC Inhibitor, to Modulate Host Cell Cycling

A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium.

Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome.

Arsenite oxidation in batch reactors with alginate‐immobilized ULPAs1 strain

Chemiluminescence of enterococci isolates from freshwater.

Microplate screening assay for the detection of arsenite-oxidizing and arsenate-reducing bacteria

Arsenite oxidase, an ancient bioenergetic enzyme.

Arsenite oxidase aox genes from a metal-resistant beta-proteobacterium.

Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum

Plant growth-promoting properties of Pseudomonas biocontrol agent producing 2,4 diacetylphloroglucinol

Horizontal Acquisition of Prokaryotic Genes for Eukaryote Functioning and Niche Adaptation

Rapid and Efficient Methods to Isolate, Type Strains and Determine Species of Agrobacterium spp. in Pure Culture and Complex Environments