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Cécile Gruet, Daniel Muller, Yvan Moënne-Loccoz. Significance of the Diversification of Wheat Species for the Assembly and Functioning of the Root-Associated Microbiome. Frontiers in Microbiology, Frontiers Media, 2022, 12, pp.782135. ⟨10.3389/fmicb.2021.782135⟩. ⟨hal-03514878⟩

Sébastien Renoud, Danis Abrouk, Claire Prigent Combaret, Florence Wisniewski-Dyé, Laurent Legendre, et al.. Effect of Inoculation Level on the Impact of the PGPR Azospirillum lipoferum CRT1 on Selected Microbial Functional Groups in the Rhizosphere of Field Maize. Microorganisms, MDPI, 2022, 10 (2), pp.325. ⟨10.3390/microorganisms10020325⟩. ⟨hal-03579580⟩

Cécile Gruet, Andréa Oudot, Danis Abrouk, Yvan Moënne-Loccoz, Daniel Muller. Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway. Applied Soil Ecology, Elsevier, 2022, 173, pp.104363. ⟨10.1016/j.apsoil.2021.104363⟩. ⟨hal-03533870⟩

Beatriz Manriquez, Daniel Muller, Claire Prigent-Combaret, Claire Prigent Combaret. Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities. Frontiers in Microbiology, Frontiers Media, 2021, 12, ⟨10.3389/fmicb.2021.619122⟩. ⟨hal-03300724⟩

Laura Rieusset, Marjolaine Rey, Daniel Muller, Jordan Vacheron, Florence Gerin, et al.. Secondary metabolites from plant‐associated Pseudomonas are overproduced in biofilm. Microbial Biotechnology, Wiley, 2020, 13 (5), pp.1562-1580. ⟨10.1111/1751-7915.13598⟩. ⟨hal-03000801⟩

Sébastien Renoud, Marie-Lara Bouffaud, Audrey Dubost, Claire Prigent-Combaret, Laurent Legendre, et al.. Co-occurrence of rhizobacteria with nitrogen fixation and/or 1-aminocyclopropane-1-carboxylate deamination abilities in the maize rhizosphere. FEMS Microbiology Ecology, Wiley-Blackwell, 2020, 96 (5), ⟨10.1093/femsec/fiaa062⟩. ⟨hal-02547931⟩

Myriam Chiaruzzi, Alexia Barbry, Anaëlle Muggeo, Anne Tristan, Isaline Jacquemond, et al.. Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women. Applied and Environmental Microbiology, American Society for Microbiology, 2020, 86 (18), pp.e01249-20. ⟨10.1128/AEM.01249-20⟩. ⟨hal-02989503⟩

Vahid Keshavarz-Tohid, Jordan Vacheron, Audrey Dubost, Claire Prigent-Combaret, Parissa Taheri, et al.. Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov. Systematic and Applied Microbiology, Elsevier, 2019, 42 (4), pp.468-480. ⟨10.1016/j.syapm.2019.04.004⟩. ⟨hal-02392254⟩

Louis Nonfoux, Myriam Chiaruzzi, Cédric Badiou, Jessica Baude, Anne Tristan, et al.. Impact of currently marketed tampons and menstrual cups on Staphylococcus aureus growth and TSST-1 production in vitro. Applied and Environmental Microbiology, American Society for Microbiology, 2018, 84 (12), ⟨10.1128/AEM.00351-18⟩. ⟨hal-01911407⟩

Nahed Abdel Ghaffar Abdel Aziz Ibrahim, Mohamed Nabil Abdel Mageed Omar, Ghada A. Abu El Heba, Yvan Moenne-Loccoz, Claire Prigent Combaret, et al.. Draft genome sequence of plant growth-promoting bacillus altitudinis strain pae4. Microbiology Resource Announcements, American Society for Microbiology, 2018, 7 (13), pp.1-2. ⟨10.1128/MRA.00962-18⟩. ⟨hal-02159605⟩

Isaline Jacquemond, Anaëlle Muggeo, Gery Lamblin, Anne Tristan, Yves Gillet, et al.. Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.9942. ⟨10.1038/s41598-018-28116-3⟩. ⟨hal-01910908⟩

Jordan Vacheron, Audrey Dubost, David Chapulliot, Claire Prigent-Combaret, Daniel Muller. Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere. Genome Announcements, American Society for Microbiology, 2017, 5 (15), pp.e00122-17. ⟨10.1128/genomeA.00122-17⟩. ⟨hal-02487196⟩

Philippe P. Lemanceau, Manuel Blouin, Daniel Muller, Yvan Moenne-Loccoz. Let the core microbiota be functional. Trends in Plant Science, Elsevier, 2017, 22 (7), pp.583-595. ⟨10.1016/j.tplants.2017.04.008⟩. ⟨hal-01608595⟩

Juliana Almario, Maxime Bruto, Jordan Vacheron, Claire Prigent-Combaret, Yvan Moenne-Loccoz, et al.. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology, Frontiers Media, 2017, 8, ⟨10.3389/fmicb.2017.01218⟩. ⟨hal-01608669⟩

Vahid Keshavarz-Tohid, Parissa Taheri, Daniel Muller, Claire Prigent-Combaret, Jordan Vacheron, et al.. Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani. Research in Microbiology, Elsevier, 2017, 168 (8), pp.760-772. ⟨10.1016/j.resmic.2017.08.002⟩. ⟨hal-02487202⟩

Jordan Vacheron, Guilhem Desbrosses, Sébastien Renoud, Rosa-Maria Padilla-Aguilar, Vincent Walker, et al.. Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2017, 31 (2), ⟨10.1094/MPMI-07-17-0185-R⟩. ⟨hal-01613633⟩

Marie-Lara Bouffaud, Sebastien Renoud, Yvan Moënne-Loccoz, Daniel Muller. Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere?. Scientific Reports, Nature Publishing Group, 2016, 6, pp.21690. ⟨10.1038/srep21690⟩. ⟨hal-02466010⟩

Jordan Vacheron, Emeline Combes-Meynet, Vincent Walker, B. Gouesnard, Daniel Muller, et al.. Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113. Plant and Soil, Springer Verlag, 2016, 407 (1-2), pp.187-202. ⟨10.1007/s11104-016-2907-0⟩. ⟨hal-02466011⟩

Florent Lassalle, Daniel Muller, Xavier Nesme. Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis. Research in Microbiology, Elsevier, 2015, 166 (10), pp.729-741. ⟨10.1016/j.resmic.2015.06.008⟩. ⟨hal-02547960⟩

Maxime Bruto, Claire Prigent-Combaret, Daniel Muller, Yvan Moënne-Loccoz. Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria. Scientific Reports, Nature Publishing Group, 2014, 4, pp.6261. ⟨10.1038/srep06261⟩. ⟨hal-02487456⟩

Martina Kyselková, Juliana Almario, Jan Kopecký, Markéta Ságová-Marečková, Jacqueline Haurat, et al.. Evaluation of rhizobacterial indicators of tobacco black root rot suppressiveness in farmers' fields. Environmental Microbiology Reports, Wiley, 2014, ⟨10.1111/1758-2229.12131⟩. ⟨hal-01010640⟩

Juliana Almario, Daniel Muller, Geneviève Défago, Yvan Moënne-Loccoz. Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2014, pp.1-12. ⟨10.1111/1462-2920.12459⟩. ⟨hal-01010573⟩

Marie-Lara Bouffaud, Marie-Andrée Poirier, Daniel Muller, Yvan Moënne-Loccoz. Root microbiome relates to plant host evolution in maize and other Poaceae. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2014, ⟨10.1111/1462-2920.12442⟩. ⟨hal-01010591⟩

Maxime Bruto, Claire Prigent-Combaret, P. Luis, Yvan Moënne-Loccoz, Daniel Muller. Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2014, 281 (1789), pp.20140848. ⟨10.1098/rspb.2014.0848⟩. ⟨hal-02487460⟩

Martha H. Ramírez-Bahena, Ludovic Vial, Florent Lassalle, Benjamin Diel, David Chapulliot, et al.. Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid. Molecular Phylogenetics and Evolution, Elsevier, 2014, 73, pp.202-207. ⟨10.1016/j.ympev.2014.01.005⟩. ⟨hal-01010660⟩

Suzanne Donn, Juliana Almario, Daniel Muller, Yvan Moënne-Loccoz, Vadakattu V.S.R. Gupta, et al.. Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale. Applied Soil Ecology, Elsevier, 2014, 78, pp.37-47. ⟨10.1016/j.apsoil.2014.02.001⟩. ⟨hal-01010607⟩

Juliana Almario, Claire Prigent-Combaret, Daniel Muller, Yvan Moënne-Loccoz. Effect of Clay Mineralogy on Iron Bioavailability and Rhizosphere Transcription of 2,4-Diacetylphloroglucinol Biosynthetic Genes in Biocontrol Pseudomonas protegens. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2013, 26 (5), pp.566-574. ⟨10.1094/MPMI-11-12-0274-R⟩. ⟨hal-02522202⟩

X. Nesme, D. Costechareyre, M. H. R. Bahena, Daniel Muller, J. Nesme, et al.. Investigating the species and strain diversity of agrobacteria by MLSA: toward a phylogenetically relevant redefinition of the genus Agrobacterium.. Frontiers in Plant-Microbe Interaction, 2013. ⟨hal-02522212⟩

Juliana Almario, Martina Kyselková, J. Kopecký, M. Ságová-Marečková, Daniel Muller, et al.. Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and soil receptivity to tobacco black root rot in Savoie region (France). Plant and Soil, Springer Verlag, 2013, pp.1-12. ⟨10.1007/s11104-013-1677-1⟩. ⟨hal-02522203⟩

Jérémy Andres, Florence Arsène-Ploetze, Valérie Barbe, Céline Brochier-Armanet, Jessica Cleiss-Arnold, et al.. Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.. Genome Biol Evol, Oxford University Press, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩. ⟨hal-00972245⟩

Vincent Walker, Maxime Bruto, Floriant Bellvert, René Bally, Daniel Muller, et al.. Unexpected phytostimulatory behavior for Escherichia coli and Agrobacterium tumefaciens model strains.. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2013, 26 (5), pp.495-502. ⟨10.1094/MPMI-12-12-0298-R⟩. ⟨hal-00965830⟩

Jordan Vacheron, G. Desbrosses, Marie.-Lara Bouffaud, B. Touraine, Yvan Moënne-Loccoz, et al.. Plant growth-promoting rhizobacteria and root system functioning. Frontiers in Plant Science, Frontiers, 2013, 4, pp.356. ⟨10.3389/fpls.2013.00356⟩. ⟨hal-02522224⟩

Juliana Almario, Yvan Moënne-Loccoz, Daniel Muller. Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils. Soil Biology and Biochemistry, Elsevier, 2012, ⟨10.1016/j.soilbio.2012.09.003⟩. ⟨hal-02532808⟩

Martha Helena Ramírez-Bahena, Xavier Nesme, Daniel Muller. Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria. Journal of Basic Microbiology, Wiley-VCH Verlag, 2012, 52 (52), pp.1-4. ⟨10.1002/jobm.201100278⟩. ⟨halsde-00723073⟩

Marie-Lara Bouffaud, Martina Kyselková, Brigitte Gouesnard, Genevieve Grundmann, Daniel Muller, et al.. Is diversification history of maize influencing selection of soil bacteria by roots?. Molecular Ecology, Wiley, 2012, 21 (1), pp.195-206. ⟨10.1111/j.1365-294X.2011.05359.x⟩. ⟨halsde-00722561⟩

Marie-Claire Lett, Daniel Muller, Didier Lièvremont, Simon Silver, Joanne Santinid. Unified Nomenclature for Genes Involved in Prokaryotic Aerobic Arsenite Oxidation. Journal of Bacteriology, American Society for Microbiology, 2012, pp.207-208. ⟨10.1128/JB.06391-11⟩. ⟨halsde-00722718⟩

Olivier Couillerot, Marie-Lara Bouffaud, Baudoin Ezékiel, Daniel Muller, Jesus Caballero-Mellado, et al.. Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlings. Soil Biology and Biochemistry, Elsevier, 2010, 42 (12), pp.2298-2305. ⟨10.1016/j.soilbio.2010.09.003⟩. ⟨hal-00874738⟩

Florence Arsène-Ploetze, Sandrine Koechler, Marie Marchal, Jean-Yves Coppée, Michael Chandler, et al.. Structure, function, and evolution of the Thiomonas spp. genome.. PLoS Genetics, Public Library of Science, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩. ⟨hal-00463879⟩

Aurélie Lieutaud, Robert van Lis, Simon Duval, Line Capowiez, Daniel Muller, et al.. Arsenite Oxidase from Ralstonia sp. 22: characterization of the enzyme and its interaction with soluble cytochromes.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2010, 285 (27), pp.20433-20441. ⟨10.1074/jbc.M110.113761⟩. ⟨hal-01602032⟩

Marianne Quéméneur, Audrey Heinrich-Salmeron, Daniel Muller, Didier Lièvremont, Michel Jauzein, et al.. Diversity surveys and evolutionary relationships of aoxB genes in aerobic arsenite-oxidizing bacteria.. Applied and Environmental Microbiology, American Society for Microbiology, 2008, 74 (14), pp.4567-73. ⟨10.1128/AEM.02851-07⟩. ⟨hal-00370780⟩

M.-C. Lett, Aurélie Lieutaud, Daniel Muller, J. Ratouchniak, V. Bonnefoy, et al.. Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study.. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2008, 10 (1), pp.228-37. ⟨10.1111/j.1462-2920.2007.01447.x⟩. ⟨hal-00281294⟩

Daniel Muller, Claudine Médigue, Sandrine Koechler, Valérie Barbe, ​mohamed Barakat, et al.. A tale of two oxidation states: bacterial colonization of arsenic-rich environments.. PLoS Genetics, Public Library of Science, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩. ⟨hal-00340034⟩

Christine Carapito, Daniel Muller, Evelyne Turlin, Sandrine Koechler, Antoine Danchin, et al.. Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome.. Biochimie, Elsevier, 2006, 88 (6), pp.595-606. ⟨10.1016/j.biochi.2005.11.004⟩. ⟨hal-00370783⟩

Daniel Muller, Diliana D Simeonova, Philippe Riegel, Sophie Mangenot, Sandrine Koechler, et al.. Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium.. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2006, 56 (Pt 8), pp.1765-9. ⟨10.1099/ijs.0.64308-0⟩. ⟨hal-00113703⟩

Philippe Andre, Catherine Metzger, Sophie Petey, Dominique J-M Vidon, Daniel Muller. Chemiluminescence of enterococci isolates from freshwater.. Microbiology Letters, Wiley, 2005, 245 (1), pp.123-9. ⟨10.1016/j.femsle.2005.02.036⟩. ⟨hal-00106769⟩

Daniel Muller, Didier Lièvremont, Diliana Dancheva Simeonova, Jean-Claude Hubert, Marie-Claire Lett. Arsenite oxidase aox genes from a metal-resistant beta-proteobacterium.. Journal of Bacteriology, American Society for Microbiology, 2003, 185 (1), pp.135-41. ⟨hal-00113723⟩

Evelyne Lebrun, Myriam Brugna, Frauke Baymann, Daniel Muller, Didier Lièvremont, et al.. Arsenite oxidase, an ancient bioenergetic enzyme.. Mol Biol Evol, 2003, 20 (5), pp.686-93. ⟨10.1093/molbev/msg071⟩. ⟨hal-00113712⟩

Jordan Valente, Christophe Gruet, Florence Gerin, Agathe Mini, Rémi Richard, et al.. Wheat genotypes and their interaction with plant-beneficial bacteria. 5. Cereals Breeding and Biotechnology Conference (CBB5), AK Congress; European Association for Research on Plant Breeding, Nov 2019, Budapest, Hungary. ⟨hal-02937622⟩

Yvan Moenne-Loccoz, Jordan Valente, Marie-Lara Bouffaud, Brigitte Gouesnard, Jacques Le Gouis, et al.. Interactions of plant-beneficial rhizosphere bacteria according to cereal genotype. Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France. ⟨hal-02338153⟩

Jordan Vacheron, F. Bellvert, Yvan Moënne-Loccoz, Daniel Muller, Claire Prigent Combaret. Evaluation of 2,4-diacetylphloroglucinol fluorescent Pseudomonas for plant growth promotion. 1st World Congress On Biostimulants on Agriculture, Nov 2012, Strasbourg, France. ⟨hal-02544356⟩

Juliana Almario, Claire Prigent Combaret, Daniel Muller, Yvan Moënne-Loccoz. Effect of clay mineralogy on the plant-protecting activity of Pseudomonas in the rhizosphere. 2nd meeting of Ph.D. students in Ecology, Evolution, Microbiology and Modelization, Mar 2012, VIlleurbanne, France. ⟨hal-02547978⟩

Maxime Bruto, Claire Prigent-Combaret, Daniel Muller, Yvan Moënne-Loccoz. Histoire évolutive des céréales et composition de la communauté bactérienne rhizosphérique. 10th Plant-Bacteria Interactions Meeting, Jan 2012, Aussois, France. ⟨hal-02544381⟩

Maxime Bruto, Claire Prigent Combaret, Daniel Muller, Yvan Moënne-Loccoz. Etude génomique des déterminants codant les propriétés phytobénéfiques des Protéobactéries. 10. Plant-Bacteria Interactions Meeting, Jan 2012, Aussois, France. ⟨hal-02545219⟩

Daniel Muller, Marie-Lara Bouffaud, Brigitte Gouesnard, Yvan Moënne-Loccoz. Significance of the evolution of Zea mays and other Poaceae for rhizobacterial community composition. 16th Evolutionary Biology Meeting, Sep 2012, Marseille, France. ⟨hal-02544401⟩

Maxime Bruto, Claire Prigent Combaret, Yvan Moënne-Loccoz, Daniel Muller. Extensive interkingdom horizontal transfers of 1-aminocyclopropane-1-carboxylate deaminase genes between bacteria and filamentous microeukaryotes. 16. Evolutionary Biology Meeting, Sep 2012, Marseille, France. ⟨hal-02545169⟩

Juliana Almario, Claire Prigent Combaret, Daniel Muller, Yvan Moënne-Loccoz. Relation between landscape distribution of disease-suppressive soils, iron bioavailability for biocontrol Pseudomonas on roots, and rhizosphere expression of genes for 2,4-diacetylphloroglucinol synthesis. 14. International Symposium on Microbial Ecology- ISME14, Aug 2012, Copenhaguen, Denmark. ⟨hal-02545176⟩

Tony Campillo, Jessica Baude, Ludovic Vial, Floriant Bellvert, Florent Lassalle, et al.. Particularités génomiques et adaptations spécifiques des espèces bactériennes : cas d'Agrobacterium fabrum. 10. Plant-Bacteria Interactions Meeting, 2012, Aussois, France. ⟨hal-02547657⟩

Marie-Lara Bouffaud, Yvan Moënne-Loccoz, Daniel Muller. Impact of plant evolutionary history on the recruitment and functioning of phytobeneficial rhizobacterial communities. Rhizosphere 3 International Conference, Sep 2011, Perth, Australia. ⟨hal-02545584⟩

Daniel Muller, Marie-Lara Bouffaud, Brigitte Gouesnard, Yvan Moënne-Loccoz. Plant evolution and diversification a factor influencing selection of soil bacteria by roots. Rhizosphere 3 International Conference 2011, Sep 2011, Perth, Australia. ⟨hal-02545550⟩

Tony Campillo, Florent Lassalle, M. Shams, Martha Helena Ramírez-Bahena, Jessica Baude, et al.. Toward an ecological concept for bacterial species in Agrobacterium. 12th International Conference on Plant Pathogenic Bacteria, Jun 2010, Saint-Denis de La Réunion, France. ⟨hal-02545712⟩

T. Campillo, Malek Shams, Sally Burr, Martha Helena Ramírez-Bahena, Florent Lassalle, et al.. La notion d'espèce en écologie microbienne. 1er Colloque National d'Ecologie Scientifique, Dec 2010, Montpellier, France. ⟨hal-02545628⟩

Florent Lassalle, Daniel Muller, Denis Costechareyre, David Chapulliot, Celine Lavire, et al.. Identification de fonctions « spécifiques d'espèce » impliquées dans l'individualisation en écovar de l’espèce G8 du complexe Agrobacterium tumefaciens. Journées des Microbiologistes de l'INRA, May 2010, Poitiers, France. ⟨hal-02545733⟩

Jordan Vacheron, Sébastien Renoud, Daniel Muller, Olubukola Oluranti Babalola, Claire Prigent-Combaret. Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum. Fabricio Dario Cassán; Yaacov Okon; Cecilia M. Creus. Handbook for Azospirillum, Springer International Publishing, pp.333-365, 2015, 978-3-319-06542-7. ⟨10.1007/978-3-319-06542-7_19⟩. ⟨hal-02457880⟩

Jordan Vacheron, Emeline Combes-Meynet, Yvan Moënne-Loccoz, Daniel Muller, Claire Prigent Combaret. Plant growth-promoting properties of Pseudomonas biocontrol agent producing 2,4 diacetylphloroglucinol. Cédric Bertrand. Natural Products and Biocontrol, Presses universitaires de Perpignan, 2014, 978-2-35412-234-8. ⟨hal-02479158⟩

Maxime Bruto, Claire Prigent Combaret, Patricia Luis, Gregory Hoff, Yvan Moënne-Loccoz, et al.. Horizontal Acquisition of Prokaryotic Genes for Eukaryote Functioning and Niche Adaptation. Evolutionary Biology : Exobiology and Evolutionary Mechanisms, Springer, 2013, 978-3-642-38211-6. ⟨10.1007/978-3-642-38212-3_11⟩. ⟨hal-02563676⟩

Malek Shams, Tony Campillo, Céline Lavire, Daniel Muller, Xavier Nesme, et al.. Rapid and Efficient Methods to Isolate, Type Strains and Determine Species of Agrobacterium spp. in Pure Culture and Complex Environments. Biochemical Testing, InTech, 2012, 978-953-51-0249-6. ⟨10.5772/36068⟩. ⟨hal-02566900⟩