Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

46 résultats
Page :
triés par
Image document

Physique statistique du repliement et de la dénaturation des acides nucléiques

 Daniel Jost
Biophysique [physics.bio-ph]. Ecole normale supérieure de lyon - ENS LYON, 2010. Français. ⟨NNT : ⟩
Thèse tel-00544804v1
Image document

Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila

 Myron Child , Jack R Bateman , Amir Jahangiri , Armando Reimer , Nicholas Lammers , et al.
2020
Pré-publication, Document de travail hal-03012922v1

A Unified Poland-Scheraga Model of Oligo- and Polynucleotide DNA Melting: Salt Effects and Predictive Power

 Daniel Jost , Ralf Everaers
Biophysical Journal, 2009, 96 (3), pp.1056-1067
Article dans une revue hal-01976506v1

Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA

 Daniel Jost
Bioinformatics, 2013, 29 (19), pp.2479-2481
Article dans une revue hal-01976602v1

The folding landscape of the epigenome

 Juan Olarte-Plata , Noelle Haddad , Cédric Vaillant , Daniel Jost
Physical Biology, 2016, 13 (2), pp.026001
Article dans une revue hal-01976579v1
Image document

4D epigenomics: deciphering the coupling between genome folding and epigenomic regulation with biophysical modeling

 Amith Abdulla , Hossein Salari , Maxime Tortora , Cédric Vaillant , Daniel Jost
Current Opinion in Genetics and Development, 2023, 79, pp.102033. ⟨10.1016/j.gde.2023.102033⟩
Article dans une revue hal-04254488v1
Image document

3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion

 Todor Gitchev , Gabriel Zala , Peter Meister , Daniel Jost
Bioinformatics, In press
Article dans une revue hal-03797993v1

Temperature Dependence of the DNA Double Helix at the Nanoscale: Structure, Elasticity, and Fluctuations

 Sam Meyer , Daniel Jost , Nikos Theodorakopoulos , Michel Peyrard , Richard Lavery , et al.
Biophysical Journal, 2013, 105 (8), pp.1904-1914
Article dans une revue hal-01976546v1
Image document

Painters in chromatin: a unified quantitative framework to systematically characterize epigenome regulation and memory

 Amith Abdulla , Cédric Vaillant , Daniel Jost
Nucleic Acids Research, 2022, 50 (16), pp.9083-9104. ⟨10.1093/nar/gkac702⟩
Article dans une revue hal-03797965v1

Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance

 Daniel Jost , Cédric Vaillant
Nucleic Acids Research, 2018, 46 (5), pp.2252-2264. ⟨10.1093/nar/gky009⟩
Article dans une revue hal-01976597v1

Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction

 Anat Lavi-Itzkovitz , Neil Peterman , Daniel Jost , Erel Levine
Nucleic Acids Research, 2014, 42 (19), pp.12200-12211
Article dans une revue hal-01976585v1
Image document

Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana

 Marco Di Stefano , Hans-Wilhelm Nutzmann , Marc A Marti-Renom , Daniel Jost
2020
Pré-publication, Document de travail hal-03012893v1

Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects

 Florent Chuffart , Magali Richard , Daniel Jost , Claire Burny , Hélène Duplus-Bottin , et al.
PLoS Genetics, 2016, 12 (8), pp.e1006213
Article dans une revue hal-01976590v1

Modeling the functional coupling between 3D chromatin organization and epigenome

 Cédric Vaillant , Daniel Jost
Modeling the 3D conformation of genomes, 2019
Chapitre d'ouvrage hal-02386050v1

How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes

 Surya Ghosh , Daniel Jost
PLoS Computational Biology, 2018, 14 (5), pp.e1006159. ⟨10.1371/journal.pcbi.1006159⟩
Article dans une revue hal-01976607v1
Image document

Temporal trends in the use of targeted temperature management after cardiac arrest and association with outcome: insights from the Paris Sudden Death Expertise Centre

 Jean-Baptiste Lascarrou , Florence Dumas , Wulfran Bougouin , Richard Chocron , Frankie Beganton , et al.
Critical Care, 2019, 23 (1), pp.391. ⟨10.1186/s13054-019-2677-1⟩
Article dans une revue inserm-02464708v1

Small RNA biology is systems biology

 Daniel Jost , Andrzej Nowojewski , Erel Levine
BMB Reports, 2011, 44 (1), pp.11-21
Article dans une revue hal-01976509v1
Image document

Genome organization via loop extrusion, insights from polymer physics models

 Surya Ghosh , Daniel Jost
Briefings in Functional Genomics and Proteomics, 2020, 19 (2), pp.119-127. ⟨10.1093/bfgp/elz023⟩
Article dans une revue hal-03012763v1
Image document

Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells

 Kapil Newar , Amith Zafal Abdulla , Hossein Salari , Eric Fanchon , Daniel Jost
PLoS Computational Biology, 2022, 18, ⟨10.1371/journal.pcbi.1010450⟩
Article dans une revue hal-03431877v1

IC-Finder: inferring robustly the hierarchical organization of chromatin folding

 Noelle Haddad , Cédric Vaillant , Daniel Jost
Nucleic Acids Research, 2017, 45 (10), pp.gkx036. ⟨10.1093/nar/gkx036⟩
Article dans une revue hal-01976542v1

Genome wide application of DNA melting analysis

 Daniel Jost , Ralf Everaers
Journal of Physics: Condensed Matter, 2009, 21 (3), pp.034108
Article dans une revue hal-01976559v1

Biophysical ordering transitions underlie genome 3D re-organization during cricket spermiogenesis

 Guillermo Orsi , Maxime Tortora , Béatrice Horard , Dominique Baas , Jean-Philippe Kleman , et al.
Nature Communications, 2023, 14 (1), pp.4187. ⟨10.1038/s41467-023-39908-1⟩
Article dans une revue hal-04246490v1

Transcription regulates the spatio-temporal dynamics of genes through micro-compartmentalization

 Hossein Salari , Geneviève Fourel , Daniel Jost
2023
Pré-publication, Document de travail hal-04254561v1

HP1-driven phase separation recapitulates the thermodynamics and kinetics of heterochromatin condensate formation

 Maxime Tortora , Lucy Brennan , Gary Karpen , Daniel Jost
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (33), ⟨10.1073/pnas.2211855120⟩
Article dans une revue hal-04254527v1

Bifurcation in epigenetics: Implications in development, proliferation, and diseases

 Daniel Jost
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2014, 89 (1)
Article dans une revue hal-01976531v1

Modeling the Functional Coupling between 3D Chromatin Organization and Epigenome

 Cédric Vaillant , Daniel Jost
Modeling the 3D conformation of genomes, 1, CRC Press, pp.21-56, 2019, 9781315144009
Chapitre d'ouvrage hal-02273692v1

Effect of replication on epigenetic memory and consequences on gene transcription

 Mehari Zerihun , Cédric Vaillant , Daniel Jost
Physical Biology, 2015, 12 (2), pp.026007
Article dans une revue hal-01976588v1
Image document

Global chromatin conformation differences in the Drosophila dosage compensated chromosome X

 Koustav Pal , Mattia Forcato , Daniel Jost , Thomas Sexton , Cédric Vaillant , et al.
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-13350-8⟩
Article dans une revue hal-02386022v1
Image document

Chromosome dynamics during interphase: a biophysical perspective

 Maxime Mc Tortora , Hossein Salari , Daniel Jost
Current Opinion in Genetics and Development, 2020, 61, pp.37-43. ⟨10.1016/j.gde.2020.03.001⟩
Article dans une revue hal-03012768v1
Image document

Polymer modeling of 3D epigenome folding: application to Drosophila

 Daniel Jost
Hi-C Data Analysis, 2301, pp 293-305, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1390-0_15⟩
Chapitre d'ouvrage hal-03798004v1
Page :