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Physique statistique du repliement et de la dénaturation des acides nucléiques
Daniel Jost
Biophysique [physics.bio-ph]. Ecole normale supérieure de lyon - ENS LYON, 2010. Français. ⟨NNT : ⟩
Thèse
tel-00544804v1
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Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila
Myron Child
,
Jack R Bateman
,
Amir Jahangiri
,
Armando Reimer
,
Nicholas Lammers
,
et al.
2020
Pré-publication, Document de travail
hal-03012922v1
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A Unified Poland-Scheraga Model of Oligo- and Polynucleotide DNA Melting: Salt Effects and Predictive Power
Daniel Jost
,
Ralf Everaers
Biophysical Journal, 2009, 96 (3), pp.1056-1067
Article dans une revue
hal-01976506v1
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Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA
Daniel Jost
Bioinformatics, 2013, 29 (19), pp.2479-2481
Article dans une revue
hal-01976602v1
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The folding landscape of the epigenome
Juan Olarte-Plata
,
Noelle Haddad
,
Cédric Vaillant
,
Daniel Jost
Physical Biology, 2016, 13 (2), pp.026001
Article dans une revue
hal-01976579v1
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Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction
Anat Lavi-Itzkovitz
,
Neil Peterman
,
Daniel Jost
,
Erel Levine
Nucleic Acids Research, 2014, 42 (19), pp.12200-12211
Article dans une revue
hal-01976585v1
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Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects
Florent Chuffart
,
Magali Richard
,
Daniel Jost
,
Claire Burny
,
Hélène Duplus-Bottin
,
et al.
PLoS Genetics, 2016, 12 (8), pp.e1006213
Article dans une revue
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How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes
Surya Ghosh
,
Daniel Jost
PLoS Computational Biology, 2018, 14 (5), pp.e1006159
Article dans une revue
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Modeling the functional coupling between 3D chromatin organization and epigenome
Cédric Vaillant
,
Daniel Jost
Modeling the 3D conformation of genomes, 2019
Chapitre d'ouvrage
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Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana
Marco Di Stefano
,
Hans-Wilhelm Nutzmann
,
Marc A Marti-Renom
,
Daniel Jost
2020
Pré-publication, Document de travail
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4D epigenomics: deciphering the coupling between genome folding and epigenomic regulation with biophysical modeling
Amith Abdulla
,
Hossein Salari
,
Maxime Tortora
,
Cédric Vaillant
,
Daniel Jost
Article dans une revue
hal-04254488v1
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3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion
Todor Gitchev
,
Gabriel Zala
,
Peter Meister
,
Daniel Jost
Bioinformatics, In press
Article dans une revue
hal-03797993v1
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Painters in chromatin: a unified quantitative framework to systematically characterize epigenome regulation and memory
Amith Abdulla
,
Cédric Vaillant
,
Daniel Jost
Article dans une revue
hal-03797965v1
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Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance
Daniel Jost
,
Cédric Vaillant
Nucleic Acids Research, 2018, 46 (5), pp.2252-2264
Article dans une revue
hal-01976597v1
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Temperature Dependence of the DNA Double Helix at the Nanoscale: Structure, Elasticity, and Fluctuations
Sam Meyer
,
Daniel Jost
,
Nikos Theodorakopoulos
,
Michel Peyrard
,
Richard Lavery
,
et al.
Biophysical Journal, 2013, 105 (8), pp.1904-1914
Article dans une revue
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Transcription regulates the spatio-temporal dynamics of genes through micro-compartmentalization
Hossein Salari
,
Geneviève Fourel
,
Daniel Jost
2023
Pré-publication, Document de travail
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Effect of replication on epigenetic memory and consequences on gene transcription
Mehari Zerihun
,
Cédric Vaillant
,
Daniel Jost
Physical Biology, 2015, 12 (2), pp.026007
Article dans une revue
hal-01976588v1
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Global chromatin conformation differences in the Drosophila dosage compensated chromosome X
Koustav Pal
,
Mattia Forcato
,
Daniel Jost
,
Thomas Sexton
,
Cédric Vaillant
,
et al.
Article dans une revue
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Modeling the Functional Coupling between 3D Chromatin Organization and Epigenome
Cédric Vaillant
,
Daniel Jost
Modeling the 3D conformation of genomes, 1, CRC Press, pp.21-56, 2019, 9781315144009
Chapitre d'ouvrage
hal-02273692v1
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HP1-driven phase separation recapitulates the thermodynamics and kinetics of heterochromatin condensate formation
Maxime Tortora
,
Lucy Brennan
,
Gary Karpen
,
Daniel Jost
Article dans une revue
hal-04254527v1
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Bifurcation in epigenetics: Implications in development, proliferation, and diseases
Daniel Jost
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2014, 89 (1)
Article dans une revue
hal-01976531v1
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Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells
Kapil Newar
,
Amith Zafal Abdulla
,
Hossein Salari
,
Eric Fanchon
,
Daniel Jost
Article dans une revue
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Genome organization via loop extrusion, insights from polymer physics models
Surya Ghosh
,
Daniel Jost
Article dans une revue
hal-03012763v1
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Small RNA biology is systems biology
Daniel Jost
,
Andrzej Nowojewski
,
Erel Levine
BMB Reports, 2011, 44 (1), pp.11-21
Article dans une revue
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Biophysical ordering transitions underlie genome 3D re-organization during cricket spermiogenesis
Guillermo Orsi
,
Maxime Tortora
,
Béatrice Horard
,
Dominique Baas
,
Jean-Philippe Kleman
,
et al.
Article dans une revue
hal-04246490v1
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IC-Finder: inferring robustly the hierarchical organization of chromatin folding
Noelle Haddad
,
Cédric Vaillant
,
Daniel Jost
Article dans une revue
hal-01976542v1
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Genome wide application of DNA melting analysis
Daniel Jost
,
Ralf Everaers
Journal of Physics: Condensed Matter, 2009, 21 (3), pp.034108
Article dans une revue
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Temporal trends in the use of targeted temperature management after cardiac arrest and association with outcome: insights from the Paris Sudden Death Expertise Centre
Jean-Baptiste Lascarrou
,
Florence Dumas
,
Wulfran Bougouin
,
Richard Chocron
,
Frankie Beganton
,
et al.
Article dans une revue
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Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model
Daniel Jost
,
Ralf Everaers
Journal of Chemical Physics, 2010, 132 (9), pp.095101
Article dans une revue
hal-01976570v1
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Regulating the Many to Benefit the Few: Role of Weak Small RNA Targets
Daniel Jost
,
Andrzej Nowojewski
,
Erel Levine
Biophysical Journal, 2013, 104 (8), pp.1773-1782
Article dans une revue
hal-01976555v1
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